Wall clock time and date at job start Tue Mar 31 2020 06:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46502 * 119.99963 * 2 1 4 4 C 1.50706 * 109.47168 * 270.00152 * 3 2 1 5 5 H 1.07993 * 120.00006 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99733 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00085 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99826 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47065 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47161 * 120.00205 * 8 6 4 11 11 H 1.48501 * 109.47246 * 240.00238 * 8 6 4 12 12 C 1.34774 * 120.00170 * 180.02562 * 2 1 3 13 13 O 1.21283 * 119.99951 * 180.02562 * 12 2 1 14 14 C 1.50693 * 119.99976 * 359.97438 * 12 2 1 15 15 O 1.45201 * 109.47125 * 180.02562 * 14 12 2 16 16 C 1.34778 * 116.99851 * 179.97438 * 15 14 12 17 17 O 1.21520 * 120.00038 * 0.02562 * 16 15 14 18 18 C 1.47346 * 119.99905 * 180.02562 * 16 15 14 19 19 C 1.39874 * 119.95794 * 0.02562 * 18 16 15 20 20 C 1.37673 * 119.79488 * 179.97438 * 19 18 16 21 21 C 1.38949 * 120.13443 * 0.03074 * 20 19 18 22 22 C 1.39728 * 120.69112 * 0.31292 * 21 20 19 23 23 C 1.38711 * 119.19707 * 359.39579 * 22 21 20 24 24 N 1.39330 * 121.63812 * 180.02562 * 22 21 20 25 25 C 1.33091 * 125.87211 * 21.57115 * 24 22 21 26 26 O 1.21297 * 118.25713 * 179.51160 * 25 24 22 27 27 C 1.50361 * 123.48227 * 359.48114 * 25 24 22 28 28 S 1.76483 * 120.06256 * 180.11251 * 21 20 19 29 29 H 1.08993 * 109.46903 * 269.99923 * 1 2 3 30 30 H 1.09004 * 109.47210 * 30.00103 * 1 2 3 31 31 H 1.09003 * 109.47104 * 149.99686 * 1 2 3 32 32 H 1.09004 * 109.46964 * 29.99978 * 3 2 1 33 33 H 1.09000 * 109.47112 * 150.00174 * 3 2 1 34 34 H 0.97006 * 119.99631 * 179.97438 * 7 6 4 35 35 H 1.09005 * 109.47140 * 60.00781 * 14 12 2 36 36 H 1.08997 * 109.47697 * 300.00588 * 14 12 2 37 37 H 1.08001 * 120.10083 * 359.92811 * 19 18 16 38 38 H 1.08001 * 119.93705 * 180.02562 * 20 19 18 39 39 H 1.07998 * 119.97448 * 180.31154 * 23 22 21 40 40 H 0.97001 * 117.06655 * 201.86185 * 24 22 21 41 41 H 1.09005 * 109.54572 * 84.78722 * 27 25 24 42 42 H 1.09005 * 109.55513 * 205.07525 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0974 1.0963 -2.2417 6 6 3.1259 2.8781 -1.6727 7 7 3.5532 3.6181 -0.6731 8 14 3.4379 3.4170 -3.4339 9 1 2.8608 2.4165 -4.3673 10 1 2.7998 4.7373 -3.6679 11 1 4.9005 3.5259 -3.6666 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1671 -0.0001 14 6 1.3854 -2.4722 -0.0005 15 8 2.3290 -3.5758 -0.0005 16 6 1.8139 -4.8213 0.0000 17 8 0.6092 -4.9805 0.0000 18 6 2.7115 -5.9898 0.0006 19 6 4.0980 -5.8055 0.0012 20 6 4.9336 -6.8997 0.0023 21 6 4.4018 -8.1834 0.0022 22 6 3.0188 -8.3825 -0.0056 23 6 2.1765 -7.2805 -0.0005 24 7 2.4645 -9.6608 -0.0053 25 6 3.0719 -10.7742 0.3980 26 8 2.4536 -11.8165 0.3467 27 6 4.4840 -10.8087 0.9134 28 16 5.4747 -9.5847 0.0066 29 1 -0.3633 0.0000 1.0276 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 1.6083 2.0284 0.5138 33 1 3.1499 1.1384 0.5138 34 1 4.0301 4.4441 -0.8504 35 1 0.7585 -2.5298 -0.8904 36 1 0.7590 -2.5302 0.8896 37 1 4.5118 -4.8079 0.0000 38 1 6.0045 -6.7600 0.0031 39 1 1.1056 -7.4199 -0.0013 40 1 1.5553 -9.7477 -0.3322 41 1 4.4902 -10.5676 1.9764 42 1 4.9038 -11.8030 0.7610 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003352145.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:02 Heat of formation + Delta-G solvation = -109.311410 kcal Electronic energy + Delta-G solvation = -28666.626720 eV Core-core repulsion = 24317.725669 eV Total energy + Delta-G solvation = -4348.901051 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 364.097 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.35639 -40.66821 -39.33744 -38.74213 -36.49701 -35.87076 -34.91584 -32.71483 -32.07617 -31.01519 -30.26762 -29.31033 -27.38475 -25.84218 -25.07733 -23.69723 -22.80216 -22.11267 -20.65977 -19.11458 -18.83428 -18.25384 -17.92277 -17.34901 -16.87528 -16.78847 -16.62837 -16.45250 -15.94772 -15.34408 -15.25763 -15.08107 -14.80068 -14.64380 -14.40124 -14.22624 -13.90231 -13.77137 -13.25865 -13.18314 -12.61071 -12.45013 -12.32823 -12.19074 -12.16853 -11.93391 -11.57284 -11.37089 -11.28106 -10.98236 -10.95078 -10.78632 -10.74710 -10.65455 -10.22110 -10.16944 -9.68817 -9.09229 -9.01248 -8.49793 -8.15728 -7.80196 -6.10631 -4.15727 -0.12964 0.51249 0.66370 1.38055 1.87675 2.05152 2.14916 2.38525 3.13512 3.18509 3.26488 3.34488 3.38486 3.43026 3.76980 4.01783 4.24573 4.36213 4.42069 4.55674 4.56575 4.60180 4.81286 4.84380 5.05214 5.14537 5.16552 5.21245 5.24389 5.53829 5.60557 5.73955 5.81465 5.81832 6.01239 6.10648 6.14321 6.44879 6.91098 7.14180 7.32598 7.38651 7.48384 7.85194 8.14502 8.21151 8.77360 8.92641 9.49585 10.97531 Molecular weight = 364.10amu Principal moments of inertia in cm(-1) A = 0.019220 B = 0.001753 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.470178 B =15967.082438 C =16815.208805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.597 5.597 3 C 0.246 3.754 4 C -0.529 4.529 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.506 3.494 13 O -0.519 6.519 14 C 0.052 3.948 15 O -0.321 6.321 16 C 0.509 3.491 17 O -0.504 6.504 18 C -0.085 4.085 19 C -0.060 4.060 20 C -0.070 4.070 21 C -0.105 4.105 22 C 0.143 3.857 23 C -0.073 4.073 24 N -0.653 5.653 25 C 0.526 3.474 26 O -0.515 6.515 27 C -0.134 4.134 28 S -0.066 6.066 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.036 0.964 33 H 0.046 0.954 34 H 0.264 0.736 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.159 0.841 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.417 0.583 41 H 0.129 0.871 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.289 -26.056 4.192 26.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.330 5.330 3 C 0.128 3.872 4 C -0.568 4.568 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.290 3.710 13 O -0.395 6.395 14 C -0.026 4.026 15 O -0.235 6.235 16 C 0.353 3.647 17 O -0.394 6.394 18 C -0.089 4.089 19 C -0.080 4.080 20 C -0.093 4.093 21 C -0.220 4.220 22 C 0.042 3.958 23 C -0.095 4.095 24 N -0.297 5.297 25 C 0.311 3.689 26 O -0.390 6.390 27 C -0.284 4.284 28 S 0.176 5.824 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.177 0.823 38 H 0.168 0.832 39 H 0.168 0.832 40 H 0.255 0.745 41 H 0.147 0.853 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.144 -26.767 3.870 27.045 hybrid contribution -1.744 0.707 -0.618 1.981 sum -1.600 -26.059 3.252 26.310 Atomic orbital electron populations 1.21745 0.81058 1.02995 1.00866 1.48102 1.06388 1.07222 1.71335 1.19377 0.92651 0.77439 0.97781 1.21452 1.36748 1.06388 0.92193 0.92306 1.24941 0.95269 0.96342 0.97556 1.69938 1.38243 1.14330 1.30714 0.86422 0.78142 0.78317 0.84418 1.19787 1.20945 1.20797 1.19670 0.88166 0.84211 0.78948 1.90716 1.13288 1.86704 1.48759 1.22992 0.91034 0.84074 1.04468 1.86602 1.39845 1.13875 1.83215 1.20940 0.87030 0.83588 0.73132 1.90855 1.15855 1.86887 1.45811 1.18894 0.93229 0.90387 1.06362 1.21680 0.91484 1.00672 0.94213 1.20835 1.01074 0.88972 0.98401 1.21768 0.93543 0.98669 1.08026 1.17213 0.91158 0.84412 1.02996 1.20898 1.00458 0.89239 0.98929 1.43017 1.19314 1.04851 1.62560 1.19844 0.88510 0.83079 0.77490 1.90860 1.64927 1.30172 1.53067 1.23882 0.94132 1.05153 1.05259 1.86042 1.22570 1.03406 1.70366 0.93240 0.90175 0.92453 0.94556 0.93567 0.92676 0.88358 0.88506 0.82318 0.83246 0.83233 0.74454 0.85296 0.83038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.13 10.24 59.85 0.61 1.74 16 2 N -0.60 -12.04 2.86 -182.95 -0.52 -12.56 16 3 C 0.25 6.20 5.16 -5.19 -0.03 6.17 16 4 C -0.53 -14.58 9.39 -34.44 -0.32 -14.90 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 7 N -0.89 -25.93 13.29 55.43 0.74 -25.20 16 8 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 9 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.51 10.09 7.75 -10.99 -0.09 10.01 16 13 O -0.52 -12.63 16.08 -14.11 -0.23 -12.85 16 14 C 0.05 0.76 4.51 36.00 0.16 0.93 16 15 O -0.32 -4.78 8.98 -47.39 -0.43 -5.21 16 16 C 0.51 6.53 7.88 34.44 0.27 6.80 16 17 O -0.50 -7.10 16.11 -19.28 -0.31 -7.41 16 18 C -0.08 -0.86 5.87 -105.03 -0.62 -1.48 16 19 C -0.06 -0.54 9.61 -39.18 -0.38 -0.92 16 20 C -0.07 -0.53 9.76 -39.52 -0.39 -0.91 16 21 C -0.10 -0.81 6.01 -38.76 -0.23 -1.04 16 22 C 0.14 1.11 6.54 -83.72 -0.55 0.56 16 23 C -0.07 -0.62 9.36 -38.86 -0.36 -0.98 16 24 N -0.65 -4.67 5.08 -10.31 -0.05 -4.72 16 25 C 0.53 4.18 7.60 -11.90 -0.09 4.09 16 26 O -0.51 -5.72 17.76 5.54 0.10 -5.62 16 27 C -0.13 -0.71 6.63 35.84 0.24 -0.48 16 28 S -0.07 -0.43 22.27 -107.50 -2.39 -2.82 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 31 H 0.06 0.68 6.44 -51.93 -0.33 0.34 16 32 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 33 H 0.05 1.31 7.42 -51.93 -0.39 0.92 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 35 H 0.10 1.30 7.40 -51.93 -0.38 0.92 16 36 H 0.10 1.21 8.10 -51.93 -0.42 0.79 16 37 H 0.16 1.50 7.60 -52.49 -0.40 1.10 16 38 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.15 1.12 7.62 -52.49 -0.40 0.72 16 40 H 0.42 2.46 8.58 -40.82 -0.35 2.11 16 41 H 0.13 0.48 8.14 -51.92 -0.42 0.06 16 42 H 0.15 0.59 8.14 -51.92 -0.42 0.16 16 LS Contribution 382.98 15.07 5.77 5.77 Total: -1.00 -35.50 382.98 -8.96 -44.45 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -4.75 Total: -1.42 kcal Atomic # 6 Polarization: 13.07 SS G_CDS: -1.86 Total: 11.21 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: 0.16 Total: -42.48 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -0.86 Total: -31.10 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -0.43 SS G_CDS: -2.39 Total: -2.82 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.50 -8.96 -44.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003352145.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.857 kcal (2) G-P(sol) polarization free energy of solvation -35.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds