Wall clock time and date at job start Tue Mar 31 2020 06:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46502 * 119.99963 * 2 1 4 4 C 1.50706 * 109.47168 * 270.00152 * 3 2 1 5 5 H 1.07993 * 120.00006 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99733 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00085 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99826 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47065 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47161 * 120.00205 * 8 6 4 11 11 H 1.48501 * 109.47246 * 240.00238 * 8 6 4 12 12 C 1.34774 * 120.00170 * 180.02562 * 2 1 3 13 13 O 1.21283 * 119.99951 * 180.02562 * 12 2 1 14 14 C 1.50693 * 119.99976 * 359.97438 * 12 2 1 15 15 O 1.45201 * 109.47125 * 180.02562 * 14 12 2 16 16 C 1.34778 * 116.99851 * 179.97438 * 15 14 12 17 17 O 1.21520 * 120.00038 * 0.02562 * 16 15 14 18 18 C 1.47346 * 119.99905 * 180.02562 * 16 15 14 19 19 C 1.39874 * 119.95794 * 0.02562 * 18 16 15 20 20 C 1.37673 * 119.79488 * 179.97438 * 19 18 16 21 21 C 1.38949 * 120.13443 * 0.03074 * 20 19 18 22 22 C 1.39728 * 120.69112 * 0.31292 * 21 20 19 23 23 C 1.38711 * 119.19707 * 359.39579 * 22 21 20 24 24 N 1.39330 * 121.63812 * 180.02562 * 22 21 20 25 25 C 1.33091 * 125.87211 * 21.57115 * 24 22 21 26 26 O 1.21297 * 118.25713 * 179.51160 * 25 24 22 27 27 C 1.50361 * 123.48227 * 359.48114 * 25 24 22 28 28 S 1.76483 * 120.06256 * 180.11251 * 21 20 19 29 29 H 1.08993 * 109.46903 * 269.99923 * 1 2 3 30 30 H 1.09004 * 109.47210 * 30.00103 * 1 2 3 31 31 H 1.09003 * 109.47104 * 149.99686 * 1 2 3 32 32 H 1.09004 * 109.46964 * 29.99978 * 3 2 1 33 33 H 1.09000 * 109.47112 * 150.00174 * 3 2 1 34 34 H 0.97006 * 119.99631 * 179.97438 * 7 6 4 35 35 H 1.09005 * 109.47140 * 60.00781 * 14 12 2 36 36 H 1.08997 * 109.47697 * 300.00588 * 14 12 2 37 37 H 1.08001 * 120.10083 * 359.92811 * 19 18 16 38 38 H 1.08001 * 119.93705 * 180.02562 * 20 19 18 39 39 H 1.07998 * 119.97448 * 180.31154 * 23 22 21 40 40 H 0.97001 * 117.06655 * 201.86185 * 24 22 21 41 41 H 1.09005 * 109.54572 * 84.78722 * 27 25 24 42 42 H 1.09005 * 109.55513 * 205.07525 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0974 1.0963 -2.2417 6 6 3.1259 2.8781 -1.6727 7 7 3.5532 3.6181 -0.6731 8 14 3.4379 3.4170 -3.4339 9 1 2.8608 2.4165 -4.3673 10 1 2.7998 4.7373 -3.6679 11 1 4.9005 3.5259 -3.6666 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1671 -0.0001 14 6 1.3854 -2.4722 -0.0005 15 8 2.3290 -3.5758 -0.0005 16 6 1.8139 -4.8213 0.0000 17 8 0.6092 -4.9805 0.0000 18 6 2.7115 -5.9898 0.0006 19 6 4.0980 -5.8055 0.0012 20 6 4.9336 -6.8997 0.0023 21 6 4.4018 -8.1834 0.0022 22 6 3.0188 -8.3825 -0.0056 23 6 2.1765 -7.2805 -0.0005 24 7 2.4645 -9.6608 -0.0053 25 6 3.0719 -10.7742 0.3980 26 8 2.4536 -11.8165 0.3467 27 6 4.4840 -10.8087 0.9134 28 16 5.4747 -9.5847 0.0066 29 1 -0.3633 0.0000 1.0276 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 1.6083 2.0284 0.5138 33 1 3.1499 1.1384 0.5138 34 1 4.0301 4.4441 -0.8504 35 1 0.7585 -2.5298 -0.8904 36 1 0.7590 -2.5302 0.8896 37 1 4.5118 -4.8079 0.0000 38 1 6.0045 -6.7600 0.0031 39 1 1.1056 -7.4199 -0.0013 40 1 1.5553 -9.7477 -0.3322 41 1 4.4902 -10.5676 1.9764 42 1 4.9038 -11.8030 0.7610 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003352145.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:01 Heat of formation + Delta-G solvation = -131.882349 kcal Electronic energy + Delta-G solvation = -28667.605469 eV Core-core repulsion = 24317.725669 eV Total energy + Delta-G solvation = -4349.879800 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 364.097 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.10109 -41.60315 -40.55937 -39.78699 -37.61489 -36.60926 -36.54435 -34.75828 -32.78011 -31.64767 -31.00226 -30.67555 -28.92533 -27.30195 -26.01885 -24.73010 -24.21054 -22.93194 -21.44154 -20.42654 -19.77175 -18.91447 -18.72117 -18.66231 -18.20576 -17.93136 -17.81048 -17.33994 -17.21396 -16.86087 -16.28327 -16.01872 -15.89286 -15.78512 -15.22492 -14.99936 -14.78365 -14.59078 -14.36298 -14.26588 -13.95771 -13.85678 -13.67172 -13.48504 -13.14774 -13.10875 -12.87078 -12.81365 -12.54940 -12.21608 -12.19323 -12.06216 -11.94844 -11.89383 -11.67269 -11.41372 -10.80697 -10.73215 -10.64521 -9.64198 -9.50438 -8.70354 -8.22801 -6.37074 -0.83569 -0.11672 0.10950 0.79252 1.10526 1.21117 1.38009 1.39370 1.40238 1.51648 1.64078 1.67872 2.33097 2.42884 2.45781 2.88634 3.07537 3.41020 3.43682 3.48323 3.87263 3.90792 3.92431 3.96955 4.03058 4.08226 4.30318 4.39855 4.48794 4.59828 4.70132 4.90744 4.94409 4.98340 5.06022 5.14435 5.22686 5.24698 5.37277 5.52652 5.78912 5.84609 6.04346 6.44029 6.55257 6.62722 6.72491 7.22301 7.37352 8.84638 Molecular weight = 364.10amu Principal moments of inertia in cm(-1) A = 0.019220 B = 0.001753 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.470178 B =15967.082438 C =16815.208805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.603 5.603 3 C 0.259 3.741 4 C -0.544 4.544 5 H 0.055 0.945 6 C 0.008 3.992 7 N -0.927 5.927 8 Si 0.967 3.033 9 H -0.267 1.267 10 H -0.270 1.270 11 H -0.282 1.282 12 C 0.498 3.502 13 O -0.575 6.575 14 C 0.064 3.936 15 O -0.339 6.339 16 C 0.513 3.487 17 O -0.519 6.519 18 C -0.102 4.102 19 C -0.062 4.062 20 C -0.066 4.066 21 C -0.106 4.106 22 C 0.144 3.856 23 C -0.066 4.066 24 N -0.649 5.649 25 C 0.525 3.475 26 O -0.550 6.550 27 C -0.130 4.130 28 S -0.057 6.057 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.031 0.969 33 H 0.003 0.997 34 H 0.267 0.733 35 H 0.121 0.879 36 H 0.127 0.873 37 H 0.150 0.850 38 H 0.169 0.831 39 H 0.158 0.842 40 H 0.422 0.578 41 H 0.150 0.850 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.925 -27.765 3.563 28.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.335 5.335 3 C 0.138 3.862 4 C -0.582 4.582 5 H 0.073 0.927 6 C -0.191 4.191 7 N -0.566 5.566 8 Si 0.792 3.208 9 H -0.191 1.191 10 H -0.195 1.195 11 H -0.207 1.207 12 C 0.285 3.715 13 O -0.455 6.455 14 C -0.013 4.013 15 O -0.254 6.254 16 C 0.359 3.641 17 O -0.409 6.409 18 C -0.106 4.106 19 C -0.083 4.083 20 C -0.089 4.089 21 C -0.222 4.222 22 C 0.043 3.957 23 C -0.088 4.088 24 N -0.293 5.293 25 C 0.312 3.688 26 O -0.428 6.428 27 C -0.280 4.280 28 S 0.186 5.814 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.049 0.951 33 H 0.021 0.979 34 H 0.076 0.924 35 H 0.139 0.861 36 H 0.145 0.855 37 H 0.168 0.832 38 H 0.186 0.814 39 H 0.176 0.824 40 H 0.261 0.739 41 H 0.168 0.832 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.541 -28.483 3.242 28.672 hybrid contribution -1.524 1.163 -0.376 1.953 sum -2.065 -27.321 2.866 27.548 Atomic orbital electron populations 1.22066 0.77393 1.04444 1.03190 1.48084 1.08642 1.05825 1.70998 1.18853 0.91355 0.79749 0.96245 1.21730 1.36893 1.06565 0.93030 0.92693 1.25842 0.94934 0.96458 1.01897 1.70049 1.38866 1.14820 1.32910 0.85370 0.77887 0.78358 0.79202 1.19142 1.19540 1.20749 1.20536 0.87827 0.85752 0.77369 1.90680 1.15937 1.87710 1.51186 1.22848 0.90126 0.81437 1.06885 1.86601 1.40452 1.14675 1.83698 1.21283 0.87252 0.83241 0.72356 1.90838 1.16414 1.86866 1.46810 1.18817 0.93236 0.89938 1.08594 1.21641 0.91353 1.00865 0.94439 1.20996 1.01819 0.88433 0.97658 1.21989 0.93865 0.99406 1.06909 1.17174 0.91190 0.84360 1.02994 1.20920 1.00975 0.88687 0.98193 1.43003 1.19623 1.04555 1.62087 1.20272 0.89258 0.82515 0.76758 1.90851 1.65998 1.31283 1.54682 1.24008 0.92169 1.05687 1.06108 1.86081 1.22059 1.02767 1.70536 0.90433 0.90814 0.88938 0.95119 0.97907 0.92363 0.86110 0.85538 0.83217 0.81399 0.82424 0.73919 0.83185 0.81326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.93 10.24 127.77 1.31 3.24 16 2 N -0.60 -24.39 2.86 -851.13 -2.43 -26.82 16 3 C 0.26 13.52 5.16 85.63 0.44 13.96 16 4 C -0.54 -30.56 9.39 25.60 0.24 -30.32 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.44 5.46 84.66 0.46 0.91 16 7 N -0.93 -54.95 13.29 21.45 0.28 -54.66 16 8 Si 0.97 44.09 29.54 68.60 2.03 46.12 16 9 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 10 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 12 C 0.50 20.03 7.75 87.66 0.68 20.71 16 13 O -0.58 -29.17 16.08 15.76 0.25 -28.91 16 14 C 0.06 1.79 4.51 71.23 0.32 2.11 16 15 O -0.34 -9.96 8.98 -50.50 -0.45 -10.41 16 16 C 0.51 12.71 7.88 70.22 0.55 13.27 16 17 O -0.52 -13.80 16.11 19.77 0.32 -13.48 16 18 C -0.10 -1.99 5.87 -20.13 -0.12 -2.11 16 19 C -0.06 -1.09 9.61 22.53 0.22 -0.88 16 20 C -0.07 -0.90 9.76 22.31 0.22 -0.69 16 21 C -0.11 -1.45 6.01 22.80 0.14 -1.31 16 22 C 0.14 2.00 6.54 38.42 0.25 2.25 16 23 C -0.07 -1.02 9.36 22.74 0.21 -0.81 16 24 N -0.65 -8.27 5.08 -305.87 -1.55 -9.82 16 25 C 0.53 7.48 7.60 87.81 0.67 8.15 16 26 O -0.55 -11.65 17.76 -3.08 -0.05 -11.70 16 27 C -0.13 -1.06 6.63 71.13 0.47 -0.59 16 28 S -0.06 -0.61 22.27 -56.49 -1.26 -1.87 16 29 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.07 2.12 8.07 -2.39 -0.02 2.10 16 31 H 0.09 1.88 6.44 -2.39 -0.02 1.86 16 32 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 33 H 0.00 0.17 7.42 -2.39 -0.02 0.15 16 34 H 0.27 14.83 8.31 -92.70 -0.77 14.06 16 35 H 0.12 2.88 7.40 -2.38 -0.02 2.86 16 36 H 0.13 2.82 8.10 -2.39 -0.02 2.80 16 37 H 0.15 2.90 7.60 -2.91 -0.02 2.88 16 38 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 39 H 0.16 2.15 7.62 -2.91 -0.02 2.12 16 40 H 0.42 4.46 8.58 -92.71 -0.80 3.67 16 41 H 0.15 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.17 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -79.40 382.98 3.49 -75.91 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: 0.30 Total: 7.76 kcal Atomic # 6 Polarization: 21.83 SS G_CDS: 6.06 Total: 27.89 kcal Atomic # 7 Polarization: -87.61 SS G_CDS: -3.70 Total: -91.31 kcal Atomic # 8 Polarization: -64.57 SS G_CDS: 0.06 Total: -64.51 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: -0.61 SS G_CDS: -1.26 Total: -1.87 kcal Total: -79.40 3.49 -75.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003352145.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.975 kcal (2) G-P(sol) polarization free energy of solvation -79.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds