Wall clock time and date at job start Tue Mar 31 2020 06:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35955 * 116.99973 * 2 1 4 4 C 1.38080 * 119.99553 * 0.25938 * 3 2 1 5 5 C 1.39988 * 119.83406 * 180.23441 * 4 3 2 6 6 C 1.46957 * 120.07494 * 179.76298 * 5 4 3 7 7 C 1.35058 * 119.99879 * 179.72349 * 6 5 4 8 8 C 1.46204 * 120.00164 * 180.02562 * 7 6 5 9 9 O 1.21739 * 119.99809 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00391 * 179.97438 * 8 7 6 11 11 C 1.39831 * 120.00283 * 185.24385 * 10 8 7 12 12 C 1.39030 * 120.00092 * 213.68145 * 11 10 8 13 13 C 1.38209 * 120.23468 * 179.97438 * 12 11 10 14 14 C 1.38016 * 120.22850 * 359.72174 * 13 12 11 15 15 C 1.39642 * 119.99772 * 0.53565 * 14 13 12 16 16 C 1.43192 * 120.11687 * 179.74128 * 15 14 13 17 17 N 9.92162 * 122.32382 * 196.41538 * 4 1 2 18 18 C 1.38618 * 120.00115 * 33.66130 * 11 10 8 19 19 C 1.40028 * 119.84133 * 359.48138 * 5 4 3 20 20 C 1.37647 * 120.00240 * 0.28489 * 19 5 4 21 21 C 1.39050 * 120.16062 * 359.97131 * 20 19 5 22 22 O 1.35618 * 119.92187 * 180.02562 * 21 20 19 23 23 C 1.34755 * 116.99874 * 6.09196 * 22 21 20 24 24 H 1.08003 * 120.00140 * 5.40601 * 23 22 21 25 25 C 1.38711 * 120.00247 * 185.40917 * 23 22 21 26 26 N 1.31523 * 119.99505 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00272 * 180.02562 * 25 23 22 28 28 H 1.48505 * 109.46954 * 359.97438 * 27 25 23 29 29 H 1.48498 * 109.47291 * 119.99540 * 27 25 23 30 30 H 1.48499 * 109.46901 * 239.99798 * 27 25 23 31 31 H 1.09011 * 109.46366 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47405 * 299.99596 * 1 2 3 33 33 H 1.08994 * 109.47069 * 60.00531 * 1 2 3 34 34 H 1.07997 * 120.08411 * 0.02562 * 4 3 2 35 35 H 1.07995 * 120.00362 * 359.71840 * 6 5 4 36 36 H 1.08004 * 119.99519 * 359.97438 * 7 6 5 37 37 H 0.96997 * 119.99358 * 5.24761 * 10 8 7 38 38 H 1.07998 * 119.88176 * 0.02562 * 12 11 10 39 39 H 1.07994 * 119.88497 * 179.97438 * 13 12 11 40 40 H 1.08001 * 120.00034 * 180.27607 * 14 13 12 41 41 H 1.07994 * 120.11074 * 0.02562 * 18 11 10 42 42 H 1.08005 * 120.00161 * 180.25667 * 19 5 4 43 43 H 1.08000 * 119.91838 * 180.02562 * 20 19 5 44 44 H 0.96999 * 119.99156 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2940 2.3693 0.0054 5 6 1.9331 3.6148 0.0004 6 6 1.1377 4.8506 0.0009 7 6 1.7559 6.0514 0.0017 8 6 0.9647 7.2809 0.0027 9 8 -0.2513 7.2222 0.0024 10 7 1.5815 8.4793 0.0041 11 6 0.8292 9.6527 0.1157 12 6 1.2418 10.8079 -0.5387 13 6 0.5017 11.9702 -0.4321 14 6 -0.6552 11.9908 0.3202 15 6 -1.0757 10.8375 0.9859 16 6 -2.2727 10.8575 1.7716 17 7 -3.2213 10.8748 2.3942 18 6 -0.3281 9.6641 0.8786 19 6 3.3318 3.6804 0.0010 20 6 4.0751 2.5218 0.0005 21 6 3.4405 1.2846 0.0000 22 8 4.1776 0.1462 0.0001 23 6 5.5122 0.2816 0.1279 24 1 5.9410 1.2556 0.3118 25 6 6.3353 -0.8300 0.0234 26 7 5.8130 -2.0162 -0.2001 27 14 8.1853 -0.6425 0.2014 28 1 8.5168 0.7841 0.4468 29 1 8.6586 -1.4647 1.3438 30 1 8.8511 -1.0975 -1.0455 31 1 -0.3632 -1.0278 0.0005 32 1 -0.3634 0.5137 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 0.2155 2.3143 0.0101 35 1 0.0590 4.7986 0.0005 36 1 2.8346 6.1034 0.0025 37 1 2.5472 8.5277 -0.0724 38 1 2.1434 10.7966 -1.1331 39 1 0.8277 12.8644 -0.9425 40 1 -1.2331 12.8999 0.3973 41 1 -0.6502 8.7679 1.3878 42 1 3.8275 4.6399 0.0013 43 1 5.1538 2.5740 0.0013 44 1 6.3886 -2.7936 -0.2728 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003603787.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:07 Heat of formation + Delta-G solvation = 7.801172 kcal Electronic energy + Delta-G solvation = -29336.407150 eV Core-core repulsion = 24992.973625 eV Total energy + Delta-G solvation = -4343.433525 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.126 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.81223 -39.79146 -38.96645 -37.75149 -36.85570 -36.60090 -34.95949 -33.19752 -32.36743 -31.70167 -30.32153 -29.78167 -28.60793 -26.65211 -25.67062 -24.42828 -24.27133 -22.66980 -21.84222 -20.98686 -19.78768 -19.14443 -18.29964 -17.87849 -17.18628 -16.72409 -16.55384 -15.94742 -15.82438 -15.46500 -15.26377 -14.88998 -14.76650 -14.44570 -14.32198 -14.16936 -14.05039 -13.70148 -13.67234 -13.53477 -13.45723 -13.12932 -12.77478 -12.49398 -12.28721 -12.17309 -11.90748 -11.90540 -11.77598 -11.54058 -11.20051 -11.10719 -10.87282 -10.75802 -10.71324 -10.55262 -10.04072 -9.69504 -9.52929 -9.35786 -8.94595 -8.53256 -8.06596 -7.00452 -6.70195 -4.20397 0.36178 0.72582 1.03123 2.04000 2.33520 2.37242 2.63246 2.85788 2.99763 3.00369 3.06911 3.32580 3.54735 3.59350 3.76291 3.88019 4.37968 4.44800 4.61957 4.67240 4.73727 4.85853 4.89964 4.99280 5.07685 5.10069 5.32039 5.42280 5.49200 5.49611 5.50375 5.61443 5.75121 5.78495 5.84752 5.90297 5.91205 6.00726 6.13455 6.27371 6.37424 6.46176 6.53658 6.74946 6.90889 7.00100 7.14424 7.17617 7.21068 7.39354 7.70425 7.99813 8.01234 8.72857 9.41185 10.45459 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.014587 B = 0.001649 C = 0.001510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.013014 B =16979.800731 C =18534.096291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.052 3.948 4 C -0.134 4.134 5 C -0.173 4.173 6 C 0.049 3.951 7 C -0.289 4.289 8 C 0.557 3.443 9 O -0.538 6.538 10 N -0.677 5.677 11 C 0.158 3.842 12 C -0.121 4.121 13 C -0.099 4.099 14 C -0.093 4.093 15 C -0.010 4.010 16 C 0.258 3.742 17 N -0.417 5.417 18 C -0.076 4.076 19 C -0.055 4.055 20 C -0.226 4.226 21 C 0.150 3.850 22 O -0.144 6.144 23 C -0.389 4.389 24 H 0.099 0.901 25 C 0.041 3.959 26 N -0.841 5.841 27 Si 0.946 3.054 28 H -0.264 1.264 29 H -0.273 1.273 30 H -0.273 1.273 31 H 0.092 0.908 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.415 0.585 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.132 0.868 41 H 0.145 0.855 42 H 0.117 0.883 43 H 0.138 0.862 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.615 21.738 -1.466 22.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.007 3.993 4 C -0.154 4.154 5 C -0.175 4.175 6 C 0.030 3.970 7 C -0.310 4.310 8 C 0.351 3.649 9 O -0.416 6.416 10 N -0.321 5.321 11 C 0.063 3.937 12 C -0.142 4.142 13 C -0.118 4.118 14 C -0.114 4.114 15 C -0.014 4.014 16 C -0.058 4.058 17 N -0.092 5.092 18 C -0.099 4.099 19 C -0.074 4.074 20 C -0.246 4.246 21 C 0.092 3.908 22 O -0.045 6.045 23 C -0.465 4.465 24 H 0.116 0.884 25 C -0.166 4.166 26 N -0.473 5.473 27 Si 0.770 3.230 28 H -0.188 1.188 29 H -0.198 1.198 30 H -0.199 1.199 31 H 0.111 0.889 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.146 0.854 37 H 0.251 0.749 38 H 0.152 0.848 39 H 0.155 0.845 40 H 0.150 0.850 41 H 0.163 0.837 42 H 0.135 0.865 43 H 0.155 0.845 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.780 20.891 -0.533 21.970 hybrid contribution 1.577 0.223 -0.279 1.617 sum -5.203 21.115 -0.812 21.761 Atomic orbital electron populations 1.22925 0.80089 1.03143 1.00441 1.86236 1.19635 1.26166 1.89689 1.18043 0.89372 0.84648 1.07275 1.20887 0.98631 0.90916 1.04927 1.18128 0.92787 0.91315 1.15240 1.22283 0.99213 0.90971 0.84562 1.22296 0.99895 0.91010 1.17789 1.18585 0.87816 0.83628 0.74822 1.90816 1.14108 1.87274 1.49446 1.43490 1.10757 1.04090 1.73772 1.17534 0.93462 0.86724 0.95996 1.21190 1.01626 0.92340 0.99047 1.20866 0.94250 0.98000 0.98671 1.21123 0.96841 0.96842 0.96599 1.15803 0.90879 0.95221 0.99523 1.25602 0.92986 0.93733 0.93449 1.81204 1.10993 1.07391 1.09589 1.21205 0.94220 0.97458 0.97005 1.20934 0.92441 0.97384 0.96592 1.20836 1.00757 0.90717 1.12266 1.18913 0.88303 0.87647 0.95917 1.84006 1.19860 1.25862 1.74724 1.21592 0.78446 0.96572 1.49858 0.88375 1.25449 1.00960 0.94211 0.96005 1.70056 1.36589 0.98820 1.41803 0.85567 0.79733 0.79165 0.78545 1.18772 1.19850 1.19857 0.88921 0.93420 0.93400 0.85812 0.85866 0.85365 0.74862 0.84794 0.84517 0.84960 0.83720 0.86536 0.84450 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.81 101.05 0.99 1.41 16 2 O -0.30 -6.26 10.28 -34.21 -0.35 -6.61 16 3 C 0.05 1.07 6.70 -39.12 -0.26 0.80 16 4 C -0.13 -2.29 8.77 -38.98 -0.34 -2.64 16 5 C -0.17 -2.78 5.87 -105.04 -0.62 -3.39 16 6 C 0.05 0.68 9.45 -37.18 -0.35 0.33 16 7 C -0.29 -3.39 9.41 -37.52 -0.35 -3.75 16 8 C 0.56 6.62 7.47 -13.06 -0.10 6.53 16 9 O -0.54 -8.14 13.93 5.15 0.07 -8.07 16 10 N -0.68 -5.70 5.33 -11.21 -0.06 -5.76 16 11 C 0.16 1.34 6.27 -83.78 -0.53 0.82 16 12 C -0.12 -0.70 9.96 -39.30 -0.39 -1.09 16 13 C -0.10 -0.49 10.02 -39.67 -0.40 -0.88 16 14 C -0.09 -0.57 9.75 -39.14 -0.38 -0.95 16 15 C -0.01 -0.09 5.73 -106.96 -0.61 -0.70 16 16 C 0.26 2.80 15.32 -22.51 -0.34 2.45 16 17 N -0.42 -5.45 18.53 41.79 0.77 -4.67 16 18 C -0.08 -0.76 8.36 -38.96 -0.33 -1.09 16 19 C -0.06 -0.90 9.40 -39.13 -0.37 -1.26 16 20 C -0.23 -4.43 9.10 -39.50 -0.36 -4.79 16 21 C 0.15 3.43 6.67 -38.76 -0.26 3.17 16 22 O -0.14 -3.92 9.52 -13.94 -0.13 -4.06 16 23 C -0.39 -10.11 9.43 30.91 0.29 -9.82 16 24 H 0.10 2.30 5.28 -52.48 -0.28 2.02 16 25 C 0.04 1.05 5.49 -17.51 -0.10 0.96 16 26 N -0.84 -23.30 13.67 55.48 0.76 -22.54 16 27 Si 0.95 18.91 29.55 -169.99 -5.02 13.89 16 28 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 29 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 30 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 31 H 0.09 1.12 8.14 -51.92 -0.42 0.70 16 32 H 0.05 0.60 7.65 -51.93 -0.40 0.20 16 33 H 0.05 0.60 7.67 -51.93 -0.40 0.20 16 34 H 0.12 1.77 6.28 -52.49 -0.33 1.44 16 35 H 0.12 1.67 7.52 -52.49 -0.39 1.27 16 36 H 0.13 1.25 6.06 -52.48 -0.32 0.93 16 37 H 0.41 2.15 8.80 -40.82 -0.36 1.79 16 38 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 39 H 0.14 0.30 8.06 -52.49 -0.42 -0.12 16 40 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 41 H 0.15 1.73 6.43 -52.49 -0.34 1.39 16 42 H 0.12 1.50 6.15 -52.48 -0.32 1.17 16 43 H 0.14 2.62 5.70 -52.49 -0.30 2.32 16 44 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 393.28 15.07 5.93 5.93 Total: -1.00 -33.17 393.28 -7.10 -40.26 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -4.26 Total: 5.53 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -4.80 Total: -13.90 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: 1.47 Total: -32.97 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.41 Total: -18.74 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.89 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.17 -7.10 -40.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003603787.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.064 kcal (2) G-P(sol) polarization free energy of solvation -33.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds