Wall clock time and date at job start Tue Mar 31 2020 05:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47206 * 2 1 4 4 O 1.42905 * 109.46715 * 119.99815 * 2 1 3 5 5 C 1.52995 * 109.47136 * 239.99511 * 2 1 3 6 6 H 1.09003 * 109.47365 * 65.00688 * 5 2 1 7 7 N 1.46501 * 109.47250 * 305.00198 * 5 2 1 8 8 S 1.65594 * 120.00179 * 95.00140 * 7 5 2 9 9 O 1.42096 * 106.40122 * 311.46286 * 8 7 5 10 10 O 1.42101 * 106.40440 * 178.53810 * 8 7 5 11 11 C 1.76204 * 107.21795 * 64.99772 * 8 7 5 12 12 C 1.38246 * 119.98704 * 90.00438 * 11 8 7 13 13 C 1.38215 * 120.01338 * 180.27954 * 12 11 8 14 14 C 1.38358 * 119.98339 * 359.46462 * 13 12 11 15 15 Cl 1.73596 * 120.00861 * 180.24067 * 14 13 12 16 16 C 1.38349 * 119.97593 * 0.51073 * 14 13 12 17 17 C 1.38212 * 119.98495 * 359.74279 * 16 14 13 18 18 C 1.50705 * 109.46962 * 185.00187 * 5 2 1 19 19 O 1.21205 * 119.99888 * 120.00366 * 18 5 2 20 20 O 1.34311 * 119.99937 * 300.00162 * 18 5 2 21 21 C 1.34918 * 117.00048 * 180.02562 * 20 18 5 22 22 H 1.07999 * 120.00164 * 359.97438 * 21 20 18 23 23 C 1.38754 * 119.99886 * 180.02562 * 21 20 18 24 24 N 1.31440 * 120.00178 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99799 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47186 * 59.99872 * 25 23 21 27 27 H 1.48498 * 109.47089 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47298 * 299.99845 * 25 23 21 29 29 H 1.09002 * 109.46994 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47656 * 300.00290 * 1 2 3 31 31 H 1.09003 * 109.47068 * 60.00416 * 1 2 3 32 32 H 0.96691 * 114.00305 * 60.00114 * 4 2 1 33 33 H 0.97005 * 119.99832 * 274.99829 * 7 5 2 34 34 H 1.08002 * 119.98964 * 359.97438 * 12 11 8 35 35 H 1.07998 * 120.00901 * 179.70367 * 13 12 11 36 36 H 1.08000 * 120.00704 * 179.72657 * 16 14 13 37 37 H 1.08004 * 119.99489 * 179.97438 * 17 16 14 38 38 H 0.96999 * 119.99882 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.0400 -0.7213 -1.2491 6 1 1.7518 -0.1584 -2.1370 7 7 1.4558 -2.0634 -1.3108 8 16 0.0842 -2.3294 -2.1996 9 8 -0.8363 -1.3115 -1.8313 10 8 -0.2045 -3.7162 -2.0868 11 6 0.4937 -2.0423 -3.8892 12 6 0.9569 -3.0817 -4.6742 13 6 1.2838 -2.8558 -5.9980 14 6 1.1367 -1.5915 -6.5405 15 17 1.5411 -1.3085 -8.2048 16 6 0.6726 -0.5518 -5.7545 17 6 0.3511 -0.7778 -4.4295 18 6 3.5419 -0.8295 -1.1887 19 8 4.0718 -1.9196 -1.1964 20 8 4.2933 0.2820 -1.1263 21 6 5.6311 0.1150 -1.0750 22 1 6.0519 -0.8796 -1.0846 23 6 6.4663 1.2210 -1.0087 24 7 5.9542 2.4315 -0.9965 25 14 8.3186 0.9897 -0.9369 26 1 8.7747 0.2679 -2.1519 27 1 8.9810 2.3171 -0.8711 28 1 8.6724 0.2001 0.2700 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.7210 -1.5951 1.2330 33 1 1.8726 -2.7963 -0.8309 34 1 1.0681 -4.0693 -4.2515 35 1 1.6502 -3.6668 -6.6098 36 1 0.5619 0.4363 -6.1763 37 1 -0.0108 0.0338 -3.8157 38 1 6.5382 3.2047 -0.9505 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004286672.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:03 Heat of formation + Delta-G solvation = -168.574711 kcal Electronic energy + Delta-G solvation = -29075.493635 eV Core-core repulsion = 24651.182702 eV Total energy + Delta-G solvation = -4424.310933 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 363.047 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -39.64397 -39.53089 -37.83952 -37.17091 -36.88254 -36.04595 -35.41039 -34.03911 -32.22259 -31.52279 -31.35883 -30.33741 -27.59526 -25.07039 -23.55539 -23.34623 -21.82404 -20.45583 -19.80269 -18.52333 -17.93813 -17.76403 -17.03434 -16.81609 -16.59384 -15.99216 -15.76032 -15.26697 -14.95545 -14.83288 -14.47155 -14.40325 -14.00477 -13.97360 -13.88638 -13.19958 -13.09350 -12.69160 -12.42130 -12.31657 -12.21585 -12.09064 -12.05488 -11.76783 -11.49087 -11.42258 -11.35915 -11.24200 -11.21891 -10.65444 -10.51108 -10.47837 -10.20710 -9.92922 -9.61378 -9.46693 -9.43516 -8.97675 -8.63479 -6.47517 -4.14963 0.10257 0.40770 0.87750 1.65619 2.66417 3.04796 3.05145 3.16071 3.19662 3.35487 3.58336 3.84970 4.07816 4.33582 4.41077 4.44941 4.69026 4.84194 4.85259 4.92390 5.01058 5.13297 5.15325 5.33919 5.49230 5.50161 5.52379 5.66610 5.68865 5.75692 6.06004 6.29730 6.31815 6.55263 6.62436 6.89120 7.32346 7.86762 7.88891 8.58332 9.00986 9.72524 10.69790 Molecular weight = 363.05amu Principal moments of inertia in cm(-1) A = 0.008200 B = 0.004141 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3413.792725 B = 6760.619240 C = 9093.237580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.097 3.903 3 H 0.124 0.876 4 O -0.547 6.547 5 C 0.140 3.860 6 H 0.112 0.888 7 N -1.094 6.094 8 S 2.693 3.307 9 O -0.940 6.940 10 O -0.955 6.955 11 C -0.678 4.678 12 C -0.002 4.002 13 C -0.132 4.132 14 C 0.018 3.982 15 Cl -0.058 7.058 16 C -0.130 4.130 17 C -0.008 4.008 18 C 0.400 3.600 19 O -0.547 6.547 20 O -0.204 6.204 21 C -0.380 4.380 22 H 0.096 0.904 23 C 0.045 3.955 24 N -0.861 5.861 25 Si 0.944 3.056 26 H -0.270 1.270 27 H -0.278 1.278 28 H -0.269 1.269 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.367 0.633 33 H 0.428 0.572 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.153 0.847 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.904 -5.907 -8.355 16.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.035 3.965 3 H 0.142 0.858 4 O -0.351 6.351 5 C 0.030 3.970 6 H 0.129 0.871 7 N -0.856 5.856 8 S 2.782 3.218 9 O -0.930 6.930 10 O -0.946 6.946 11 C -0.764 4.764 12 C -0.021 4.021 13 C -0.152 4.152 14 C -0.009 4.009 15 Cl -0.029 7.029 16 C -0.150 4.150 17 C -0.028 4.028 18 C 0.245 3.755 19 O -0.444 6.444 20 O -0.109 6.109 21 C -0.456 4.456 22 H 0.113 0.887 23 C -0.160 4.160 24 N -0.498 5.498 25 Si 0.768 3.232 26 H -0.195 1.195 27 H -0.203 1.203 28 H -0.194 1.194 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.213 0.787 33 H 0.266 0.734 34 H 0.168 0.832 35 H 0.162 0.838 36 H 0.164 0.836 37 H 0.171 0.829 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.239 -5.421 -8.179 16.479 hybrid contribution 1.457 -0.718 -0.907 1.860 sum -11.782 -6.139 -9.085 16.095 Atomic orbital electron populations 1.22838 0.94185 1.03654 1.03238 1.22422 0.93935 0.97213 0.82904 0.85812 1.86695 1.77109 1.28386 1.42892 1.20905 0.91137 0.82872 1.02043 0.87052 1.55336 1.48031 1.17064 1.65166 1.02000 0.73202 0.73646 0.72948 1.93727 1.60021 1.58846 1.80432 1.93602 1.82842 1.31985 1.86141 1.31142 1.17479 1.01210 1.26565 1.20914 0.90123 0.98345 0.92740 1.21208 1.01946 0.95995 0.96019 1.21316 0.97840 0.95370 0.86335 1.98403 1.91829 1.96452 1.16198 1.21228 1.00634 0.99148 0.93943 1.20987 0.91819 0.95064 0.94896 1.22591 0.89057 0.84342 0.79545 1.90546 1.73728 1.28951 1.51191 1.83823 1.20334 1.32102 1.74674 1.21156 0.76967 0.95078 1.52443 0.88686 1.25319 1.00476 0.94169 0.96023 1.69968 1.36216 0.97735 1.45846 0.85743 0.80314 0.77761 0.79359 1.19539 1.20317 1.19404 0.91729 0.92073 0.89761 0.78651 0.73447 0.83204 0.83825 0.83642 0.82922 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 7.68 37.16 0.29 -2.06 16 2 C 0.10 1.50 3.44 -26.73 -0.09 1.41 16 3 H 0.12 2.08 8.14 -51.93 -0.42 1.66 16 4 O -0.55 -9.26 12.82 -35.23 -0.45 -9.71 16 5 C 0.14 2.26 2.78 -69.08 -0.19 2.07 16 6 H 0.11 1.54 7.23 -51.93 -0.38 1.16 16 7 N -1.09 -14.72 4.33 -5.88 -0.03 -14.75 16 8 S 2.69 32.92 5.34 -107.50 -0.57 32.34 16 9 O -0.94 -11.91 11.94 -57.17 -0.68 -12.60 16 10 O -0.96 -13.54 17.28 -57.17 -0.99 -14.53 16 11 C -0.68 -8.06 5.82 -39.58 -0.23 -8.29 16 12 C 0.00 -0.02 9.52 -39.59 -0.38 -0.40 16 13 C -0.13 -1.40 9.83 -39.55 -0.39 -1.79 16 14 C 0.02 0.20 6.32 -39.50 -0.25 -0.05 16 15 Cl -0.06 -0.58 28.96 -51.86 -1.50 -2.08 16 16 C -0.13 -1.37 9.83 -39.55 -0.39 -1.76 16 17 C -0.01 -0.09 8.90 -39.59 -0.35 -0.44 16 18 C 0.40 9.04 6.79 36.01 0.24 9.28 16 19 O -0.55 -13.37 15.23 -19.05 -0.29 -13.66 16 20 O -0.20 -5.48 9.67 -20.70 -0.20 -5.68 16 21 C -0.38 -10.83 9.64 30.92 0.30 -10.53 16 22 H 0.10 2.73 6.86 -52.49 -0.36 2.37 16 23 C 0.04 1.22 5.49 -17.53 -0.10 1.13 16 24 N -0.86 -24.32 13.67 55.48 0.76 -23.57 16 25 Si 0.94 20.83 29.55 -169.99 -5.02 15.81 16 26 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 27 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 28 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 29 H 0.06 0.80 5.46 -51.93 -0.28 0.52 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 1.02 6.98 -51.93 -0.36 0.66 16 32 H 0.37 4.88 8.64 45.56 0.39 5.28 16 33 H 0.43 5.61 8.20 -34.47 -0.28 5.33 16 34 H 0.15 1.48 7.62 -52.49 -0.40 1.08 16 35 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.15 1.36 7.62 -52.48 -0.40 0.96 16 38 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 355.45 15.07 5.36 5.36 Total: -1.00 -35.17 355.45 -8.06 -43.22 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -2.89 Total: 11.26 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -1.54 Total: -11.43 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.73 Total: -38.31 kcal Atomic # 8 Polarization: -53.56 SS G_CDS: -2.61 Total: -56.17 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 32.92 SS G_CDS: -0.57 Total: 32.34 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.17 -8.06 -43.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004286672.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.351 kcal (2) G-P(sol) polarization free energy of solvation -35.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds