Wall clock time and date at job start Tue Mar 31 2020 05:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.47075 * 2 1 4 4 O 1.42904 * 109.47096 * 240.00304 * 2 1 3 5 5 C 1.52997 * 109.47204 * 120.00056 * 2 1 3 6 6 H 1.08998 * 109.47782 * 299.10848 * 5 2 1 7 7 N 1.46508 * 109.46933 * 59.10703 * 5 2 1 8 8 S 1.65601 * 119.99784 * 215.23170 * 7 5 2 9 9 O 1.42100 * 106.40341 * 309.27700 * 8 7 5 10 10 O 1.42093 * 106.40153 * 176.35019 * 8 7 5 11 11 C 1.76201 * 107.21566 * 62.81441 * 8 7 5 12 12 C 1.38240 * 119.99002 * 84.50449 * 11 8 7 13 13 C 1.38212 * 120.01556 * 180.27352 * 12 11 8 14 14 C 1.38351 * 119.98709 * 359.46867 * 13 12 11 15 15 Cl 1.73600 * 120.01574 * 180.23376 * 14 13 12 16 16 C 1.38360 * 119.97343 * 0.55140 * 14 13 12 17 17 C 1.38219 * 119.98096 * 359.70016 * 16 14 13 18 18 C 1.50699 * 109.47227 * 179.10119 * 5 2 1 19 19 O 1.21206 * 120.00472 * 240.00387 * 18 5 2 20 20 O 1.34316 * 119.99798 * 60.00314 * 18 5 2 21 21 C 1.34917 * 117.00099 * 180.02562 * 20 18 5 22 22 H 1.08000 * 119.99885 * 359.97438 * 21 20 18 23 23 C 1.38751 * 119.99916 * 180.02562 * 21 20 18 24 24 N 1.31440 * 120.00324 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00069 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47062 * 0.02562 * 25 23 21 27 27 H 1.48493 * 109.47092 * 119.99700 * 25 23 21 28 28 H 1.48498 * 109.47557 * 240.00214 * 25 23 21 29 29 H 1.09000 * 109.46775 * 184.18889 * 1 2 3 30 30 H 1.08994 * 109.47111 * 304.18424 * 1 2 3 31 31 H 1.08996 * 109.46910 * 64.18908 * 1 2 3 32 32 H 0.96702 * 113.99788 * 59.99619 * 4 2 1 33 33 H 0.96995 * 120.00454 * 35.23189 * 7 5 2 34 34 H 1.07998 * 119.99186 * 359.97438 * 12 11 8 35 35 H 1.08001 * 120.00809 * 179.69504 * 13 12 11 36 36 H 1.07997 * 120.00873 * 179.68175 * 16 14 13 37 37 H 1.08000 * 119.98687 * 179.97438 * 17 16 14 38 38 H 0.96998 * 120.00286 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0401 -0.7212 1.2492 6 1 1.6900 -0.1984 2.1392 7 7 1.5342 -2.0962 1.2600 8 16 1.1362 -2.8207 2.6949 9 8 2.2509 -2.6415 3.5577 10 8 0.6050 -4.0970 2.3661 11 6 -0.1895 -1.8957 3.3960 12 6 -1.4920 -2.1558 3.0130 13 6 -2.5318 -1.4267 3.5584 14 6 -2.2698 -0.4438 4.4962 15 17 -3.5758 0.4682 5.1863 16 6 -0.9659 -0.1836 4.8790 17 6 0.0734 -0.9099 4.3289 18 6 3.5469 -0.7406 1.2381 19 8 4.1395 -1.7979 1.2391 20 8 4.2333 0.4139 1.2271 21 6 5.5795 0.3261 1.2170 22 1 6.0575 -0.6424 1.2184 23 6 6.3500 1.4800 1.2059 24 7 5.7683 2.6587 1.2047 25 14 8.2140 1.3585 1.1927 26 1 8.6169 -0.0709 1.1958 27 1 8.7444 2.0190 -0.0269 28 1 8.7625 2.0304 2.3980 29 1 -0.3633 -1.0249 0.0751 30 1 -0.3633 0.5774 0.8501 31 1 -0.3633 0.4474 -0.9251 32 1 1.7210 -0.2700 -1.9980 33 1 1.4325 -2.5821 0.4267 34 1 -1.6968 -2.9256 2.2837 35 1 -3.5490 -1.6267 3.2554 36 1 -0.7604 0.5870 5.6071 37 1 1.0913 -0.7066 4.6273 38 1 6.3069 3.4654 1.1965 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004286675.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:08 Heat of formation + Delta-G solvation = -173.951904 kcal Electronic energy + Delta-G solvation = -28985.042934 eV Core-core repulsion = 24560.498828 eV Total energy + Delta-G solvation = -4424.544106 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 363.047 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.64074 -39.36493 -37.50834 -37.15590 -36.95816 -35.76377 -35.34603 -34.11362 -32.09643 -31.57036 -31.37976 -30.54623 -27.54827 -24.98881 -23.57140 -23.37112 -21.85678 -20.29129 -19.70067 -18.45364 -17.81294 -17.58610 -16.99795 -16.89261 -16.39797 -16.29390 -15.71996 -15.03123 -14.86163 -14.70861 -14.44421 -14.22019 -14.05161 -13.99868 -13.96180 -13.15109 -13.06929 -12.61060 -12.43918 -12.16787 -12.14085 -12.10103 -11.99121 -11.89989 -11.81967 -11.56901 -11.30570 -11.21675 -11.08966 -10.89013 -10.37430 -10.30650 -10.09806 -9.89582 -9.72631 -9.53484 -9.50999 -8.76032 -8.53074 -6.37388 -4.03240 0.13682 0.44937 0.81209 1.57949 2.78569 3.11609 3.13444 3.23233 3.30980 3.50898 3.72416 3.95702 4.14202 4.23362 4.39617 4.44351 4.53716 4.78597 4.82033 4.94326 5.05647 5.10088 5.18596 5.21212 5.35194 5.44717 5.48690 5.58769 5.65597 5.72674 5.76629 5.89194 6.12868 6.24934 6.73232 7.06890 7.45692 7.78415 8.00895 8.77765 9.12778 9.88108 10.80856 Molecular weight = 363.05amu Principal moments of inertia in cm(-1) A = 0.012194 B = 0.003193 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.574171 B = 8766.636813 C = 9321.167021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.104 3.896 3 H 0.088 0.912 4 O -0.555 6.555 5 C 0.184 3.816 6 H 0.115 0.885 7 N -1.082 6.082 8 S 2.691 3.309 9 O -0.934 6.934 10 O -0.957 6.957 11 C -0.677 4.677 12 C -0.004 4.004 13 C -0.134 4.134 14 C 0.016 3.984 15 Cl -0.060 7.060 16 C -0.129 4.129 17 C -0.007 4.007 18 C 0.393 3.607 19 O -0.529 6.529 20 O -0.216 6.216 21 C -0.373 4.373 22 H 0.096 0.904 23 C 0.041 3.959 24 N -0.869 5.869 25 Si 0.940 3.060 26 H -0.265 1.265 27 H -0.277 1.277 28 H -0.277 1.277 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.379 0.621 33 H 0.428 0.572 34 H 0.149 0.851 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.156 0.844 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.062 -2.378 2.204 20.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.043 3.957 3 H 0.105 0.895 4 O -0.360 6.360 5 C 0.074 3.926 6 H 0.133 0.867 7 N -0.843 5.843 8 S 2.779 3.221 9 O -0.923 6.923 10 O -0.947 6.947 11 C -0.762 4.762 12 C -0.023 4.023 13 C -0.153 4.153 14 C -0.011 4.011 15 Cl -0.031 7.031 16 C -0.149 4.149 17 C -0.026 4.026 18 C 0.236 3.764 19 O -0.424 6.424 20 O -0.123 6.123 21 C -0.450 4.450 22 H 0.113 0.887 23 C -0.162 4.162 24 N -0.507 5.507 25 Si 0.765 3.235 26 H -0.189 1.189 27 H -0.203 1.203 28 H -0.202 1.202 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.226 0.774 33 H 0.264 0.736 34 H 0.167 0.833 35 H 0.161 0.839 36 H 0.164 0.836 37 H 0.174 0.826 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.271 -3.358 3.258 19.831 hybrid contribution -0.142 0.892 -0.591 1.080 sum -19.413 -2.466 2.667 19.750 Atomic orbital electron populations 1.22543 0.95937 1.02977 1.02847 1.21935 0.92567 0.96323 0.84894 0.89460 1.86575 1.77124 1.56819 1.15495 1.20082 0.90880 0.81991 0.99619 0.86733 1.55045 1.79202 1.24373 1.25717 1.02165 0.73759 0.73102 0.73113 1.93668 1.47994 1.85362 1.65303 1.93582 1.80649 1.36749 1.83736 1.31341 1.15835 1.15830 1.13237 1.20880 0.90195 0.95616 0.95629 1.21177 1.00652 0.96053 0.97447 1.21314 0.89629 0.94310 0.95862 1.98403 1.48161 1.73083 1.83409 1.21259 0.90450 1.01431 1.01736 1.21113 1.00697 0.90047 0.90787 1.23089 0.89969 0.84147 0.79200 1.90569 1.70264 1.32491 1.49038 1.83824 1.21614 1.30837 1.76063 1.21260 0.77154 0.94959 1.51616 0.88662 1.25274 1.00395 0.94096 0.96414 1.69982 1.36003 0.97290 1.47459 0.85644 0.80857 0.78953 0.78006 1.18949 1.20293 1.20226 0.91583 0.91425 0.91708 0.77380 0.73552 0.83347 0.83939 0.83636 0.82639 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.77 9.43 37.16 0.35 -1.42 16 2 C 0.10 1.45 3.32 -26.73 -0.09 1.36 16 3 H 0.09 1.32 8.13 -51.93 -0.42 0.89 16 4 O -0.55 -8.11 12.45 -35.23 -0.44 -8.55 16 5 C 0.18 3.13 2.55 -69.08 -0.18 2.96 16 6 H 0.12 1.65 7.37 -51.93 -0.38 1.27 16 7 N -1.08 -16.37 4.07 -5.88 -0.02 -16.40 16 8 S 2.69 40.73 5.65 -107.50 -0.61 40.13 16 9 O -0.93 -18.08 16.96 -57.17 -0.97 -19.05 16 10 O -0.96 -15.54 17.43 -57.17 -1.00 -16.54 16 11 C -0.68 -7.88 5.66 -39.58 -0.22 -8.10 16 12 C 0.00 -0.04 9.52 -39.59 -0.38 -0.41 16 13 C -0.13 -1.13 9.83 -39.55 -0.39 -1.52 16 14 C 0.02 0.14 6.32 -39.50 -0.25 -0.11 16 15 Cl -0.06 -0.49 28.96 -51.86 -1.50 -2.00 16 16 C -0.13 -1.23 9.83 -39.54 -0.39 -1.62 16 17 C -0.01 -0.08 9.15 -39.59 -0.36 -0.44 16 18 C 0.39 9.60 6.90 36.00 0.25 9.85 16 19 O -0.53 -14.54 15.67 -19.05 -0.30 -14.84 16 20 O -0.22 -6.03 9.67 -20.71 -0.20 -6.23 16 21 C -0.37 -11.06 9.64 30.92 0.30 -10.76 16 22 H 0.10 2.90 6.86 -52.49 -0.36 2.54 16 23 C 0.04 1.16 5.49 -17.53 -0.10 1.06 16 24 N -0.87 -24.93 13.67 55.48 0.76 -24.17 16 25 Si 0.94 21.48 29.55 -169.99 -5.02 16.46 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 27 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 28 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 29 H 0.07 0.58 7.45 -51.93 -0.39 0.19 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.38 3.67 9.08 45.56 0.41 4.08 16 33 H 0.43 5.92 8.43 -34.47 -0.29 5.62 16 34 H 0.15 1.15 7.75 -52.49 -0.41 0.74 16 35 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.16 1.73 7.50 -52.49 -0.39 1.34 16 38 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 366.32 15.07 5.52 5.52 Total: -1.00 -38.83 366.32 -8.29 -47.12 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -3.05 Total: 7.71 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -1.45 Total: -9.16 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.73 Total: -40.57 kcal Atomic # 8 Polarization: -62.31 SS G_CDS: -2.90 Total: -65.21 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 40.73 SS G_CDS: -0.61 Total: 40.13 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.50 Total: -2.00 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -38.83 -8.29 -47.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004286675.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.833 kcal (2) G-P(sol) polarization free energy of solvation -38.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds