Wall clock time and date at job start Tue Mar 31 2020 05:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47456 * 2 1 4 4 O 1.42904 * 109.47191 * 119.99872 * 2 1 3 5 5 C 1.52997 * 109.47276 * 239.99861 * 2 1 3 6 6 H 1.09000 * 109.47140 * 54.99820 * 5 2 1 7 7 N 1.46500 * 109.47204 * 174.99947 * 5 2 1 8 8 S 1.65595 * 120.00152 * 265.00092 * 7 5 2 9 9 O 1.42104 * 106.40329 * 178.54300 * 8 7 5 10 10 O 1.42107 * 106.39961 * 311.45471 * 8 7 5 11 11 C 1.76197 * 107.21911 * 64.99816 * 8 7 5 12 12 C 1.38239 * 119.98736 * 269.72493 * 11 8 7 13 13 C 1.38215 * 120.01257 * 179.72352 * 12 11 8 14 14 C 1.38354 * 119.98366 * 0.55148 * 13 12 11 15 15 Cl 1.73603 * 120.01197 * 179.70209 * 14 13 12 16 16 C 1.38346 * 119.97575 * 359.72566 * 14 13 12 17 17 C 1.38217 * 119.98876 * 359.97438 * 16 14 13 18 18 C 1.50706 * 109.47103 * 294.99774 * 5 2 1 19 19 O 1.21207 * 120.00189 * 239.72260 * 18 5 2 20 20 O 1.34310 * 119.99701 * 59.99895 * 18 5 2 21 21 C 1.34915 * 117.00237 * 180.02562 * 20 18 5 22 22 H 1.08001 * 119.99912 * 359.97438 * 21 20 18 23 23 C 1.38749 * 120.00590 * 180.02562 * 21 20 18 24 24 N 1.31437 * 120.00637 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 119.99764 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.47165 * 90.00172 * 25 23 21 27 27 H 1.48505 * 109.47255 * 210.00064 * 25 23 21 28 28 H 1.48499 * 109.47238 * 330.00465 * 25 23 21 29 29 H 1.09004 * 109.47120 * 300.00218 * 1 2 3 30 30 H 1.08998 * 109.47375 * 60.00358 * 1 2 3 31 31 H 1.09000 * 109.46912 * 180.02562 * 1 2 3 32 32 H 0.96702 * 114.00233 * 299.99983 * 4 2 1 33 33 H 0.97009 * 119.99791 * 85.00287 * 7 5 2 34 34 H 1.08000 * 119.99520 * 0.02562 * 12 11 8 35 35 H 1.07995 * 120.00812 * 180.27834 * 13 12 11 36 36 H 1.08002 * 120.00716 * 179.97438 * 16 14 13 37 37 H 1.07999 * 119.99433 * 179.97438 * 17 16 14 38 38 H 0.97002 * 120.00864 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7213 -1.2492 6 1 1.6054 -0.2618 -2.1369 7 7 3.5000 -0.6179 -1.3109 8 16 4.2080 0.5867 -2.1997 9 8 5.6112 0.4380 -2.0312 10 8 3.5722 0.5742 -3.4705 11 6 3.7752 2.1173 -1.4418 12 6 2.6319 2.7856 -1.8381 13 6 2.2888 3.9835 -1.2399 14 6 3.0961 4.5193 -0.2523 15 17 2.6701 6.0277 0.4941 16 6 4.2433 3.8529 0.1398 17 6 4.5821 2.6520 -0.4547 18 6 1.6414 -2.1734 -1.1888 19 8 2.4922 -3.0365 -1.2016 20 8 0.3429 -2.5113 -1.1264 21 6 0.0545 -3.8282 -1.0740 22 1 0.8520 -4.5564 -1.0837 23 6 -1.2666 -4.2471 -1.0086 24 7 -1.5476 -5.5300 -0.9571 25 14 -2.6460 -2.9875 -0.9926 26 1 -3.0671 -2.6967 -2.3866 27 1 -3.8001 -3.5269 -0.2292 28 1 -2.1676 -1.7376 -0.3491 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.7210 -0.2701 1.9980 33 1 4.0521 -1.2551 -0.8311 34 1 2.0039 2.3693 -2.6118 35 1 1.3932 4.5033 -1.5464 36 1 4.8741 4.2709 0.9104 37 1 5.4778 2.1319 -0.1489 38 1 -2.4712 -5.8229 -0.9111 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004286679.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:11 Heat of formation + Delta-G solvation = -170.505605 kcal Electronic energy + Delta-G solvation = -29163.489064 eV Core-core repulsion = 24739.094401 eV Total energy + Delta-G solvation = -4424.394663 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 363.047 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -39.84686 -39.65648 -37.58780 -37.31215 -37.05119 -36.01604 -35.72152 -34.26417 -32.36090 -31.69613 -31.51523 -30.90542 -27.06627 -25.13765 -23.70705 -23.49330 -22.28266 -20.06600 -19.84984 -18.63390 -18.22705 -17.97496 -16.99193 -16.93513 -16.56161 -16.28754 -15.99010 -15.25588 -15.10019 -14.95612 -14.64794 -14.36705 -14.12197 -14.08760 -13.69567 -13.28359 -13.01387 -12.72290 -12.54017 -12.40123 -12.26971 -12.25410 -12.24685 -12.12934 -11.93883 -11.81582 -11.41330 -11.38030 -11.24072 -11.00539 -10.52054 -10.43394 -10.07212 -9.79086 -9.67230 -9.63616 -9.58330 -9.13173 -8.70230 -6.39666 -4.15551 -0.00508 0.28669 0.69829 1.47977 2.61840 2.95315 3.06560 3.19755 3.26244 3.30180 3.56789 3.81588 3.99640 4.17741 4.20665 4.28788 4.31690 4.69370 4.77487 4.83386 4.97893 4.98733 5.08581 5.17114 5.18246 5.34186 5.35321 5.51378 5.57971 5.64500 5.86592 5.87847 6.12656 6.22136 6.75044 6.96949 7.66165 7.70502 8.01388 8.56089 8.97456 9.59609 10.68908 Molecular weight = 363.05amu Principal moments of inertia in cm(-1) A = 0.012906 B = 0.003483 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.057833 B = 8036.559905 C = 9360.764889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.093 3.907 3 H 0.061 0.939 4 O -0.549 6.549 5 C 0.171 3.829 6 H 0.129 0.871 7 N -1.088 6.088 8 S 2.697 3.303 9 O -0.950 6.950 10 O -0.949 6.949 11 C -0.677 4.677 12 C -0.009 4.009 13 C -0.131 4.131 14 C 0.016 3.984 15 Cl -0.058 7.058 16 C -0.133 4.133 17 C 0.000 4.000 18 C 0.423 3.577 19 O -0.523 6.523 20 O -0.243 6.243 21 C -0.380 4.380 22 H 0.110 0.890 23 C 0.067 3.933 24 N -0.874 5.874 25 Si 0.898 3.102 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.252 1.252 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.377 0.623 33 H 0.432 0.568 34 H 0.153 0.847 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.152 0.848 38 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.474 23.663 3.508 24.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C 0.032 3.968 3 H 0.079 0.921 4 O -0.354 6.354 5 C 0.061 3.939 6 H 0.146 0.854 7 N -0.850 5.850 8 S 2.785 3.215 9 O -0.940 6.940 10 O -0.939 6.939 11 C -0.762 4.762 12 C -0.028 4.028 13 C -0.150 4.150 14 C -0.011 4.011 15 Cl -0.029 7.029 16 C -0.152 4.152 17 C -0.020 4.020 18 C 0.265 3.735 19 O -0.416 6.416 20 O -0.151 6.151 21 C -0.455 4.455 22 H 0.128 0.872 23 C -0.137 4.137 24 N -0.513 5.513 25 Si 0.723 3.277 26 H -0.198 1.198 27 H -0.209 1.209 28 H -0.176 1.176 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.125 0.875 32 H 0.223 0.777 33 H 0.271 0.729 34 H 0.171 0.829 35 H 0.163 0.837 36 H 0.162 0.838 37 H 0.170 0.830 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.162 23.026 2.297 24.224 hybrid contribution -1.158 1.147 1.261 2.061 sum 6.004 24.173 3.558 25.160 Atomic orbital electron populations 1.22897 0.94548 1.06923 1.02238 1.22207 0.94406 0.94255 0.85925 0.92125 1.86631 1.76399 1.57142 1.15267 1.20295 0.80289 0.94408 0.98894 0.85385 1.55161 1.13573 1.46067 1.70203 1.01894 0.73260 0.72770 0.73569 1.93607 1.28504 1.85712 1.86209 1.93618 1.77022 1.86265 1.37001 1.31259 1.06335 1.24881 1.13774 1.21013 0.93157 0.92929 0.95719 1.21220 1.00611 0.96757 0.96456 1.21323 0.95828 0.88582 0.95327 1.98409 1.92847 1.30519 1.81131 1.21215 0.96450 0.95795 1.01740 1.20937 0.97003 0.93601 0.90436 1.22203 0.82551 0.89772 0.78930 1.90597 1.51413 1.50693 1.48908 1.83481 1.24880 1.29806 1.76923 1.20656 0.95030 0.78146 1.51696 0.87244 1.24523 0.97208 0.96298 0.95677 1.69597 1.20605 1.13602 1.47472 0.86405 0.80542 0.81792 0.78929 1.19846 1.20921 1.17626 0.92093 0.91431 0.87518 0.77654 0.72896 0.82927 0.83691 0.83830 0.83039 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.84 9.17 37.16 0.34 -2.50 16 2 C 0.09 1.23 3.50 -26.73 -0.09 1.14 16 3 H 0.06 0.61 6.18 -51.93 -0.32 0.29 16 4 O -0.55 -7.79 12.75 -35.23 -0.45 -8.24 16 5 C 0.17 2.75 2.72 -69.08 -0.19 2.56 16 6 H 0.13 1.75 7.50 -51.93 -0.39 1.36 16 7 N -1.09 -15.87 5.21 -5.88 -0.03 -15.90 16 8 S 2.70 35.11 5.72 -107.50 -0.61 34.49 16 9 O -0.95 -14.08 17.28 -57.17 -0.99 -15.06 16 10 O -0.95 -14.54 16.61 -57.17 -0.95 -15.49 16 11 C -0.68 -6.81 4.94 -39.58 -0.20 -7.01 16 12 C -0.01 -0.08 8.72 -39.59 -0.35 -0.42 16 13 C -0.13 -1.01 9.83 -39.55 -0.39 -1.40 16 14 C 0.02 0.13 6.32 -39.50 -0.25 -0.12 16 15 Cl -0.06 -0.43 28.96 -51.86 -1.50 -1.93 16 16 C -0.13 -1.01 9.83 -39.55 -0.39 -1.40 16 17 C 0.00 0.00 9.52 -39.59 -0.38 -0.38 16 18 C 0.42 9.49 6.76 36.01 0.24 9.73 16 19 O -0.52 -13.45 15.23 -19.05 -0.29 -13.74 16 20 O -0.24 -5.93 5.73 -20.69 -0.12 -6.05 16 21 C -0.38 -10.85 10.10 30.92 0.31 -10.54 16 22 H 0.11 3.51 7.09 -52.49 -0.37 3.14 16 23 C 0.07 1.84 5.49 -17.53 -0.10 1.74 16 24 N -0.87 -25.32 13.96 55.48 0.77 -24.55 16 25 Si 0.90 20.02 28.52 -169.99 -4.85 15.17 16 26 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.25 -5.13 5.54 56.52 0.31 -4.82 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.11 1.92 3.77 -51.93 -0.20 1.73 16 32 H 0.38 3.59 9.08 45.56 0.41 4.00 16 33 H 0.43 6.51 8.22 -34.47 -0.28 6.23 16 34 H 0.15 1.16 7.61 -52.49 -0.40 0.76 16 35 H 0.15 0.83 8.06 -52.49 -0.42 0.40 16 36 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 37 H 0.15 1.14 7.62 -52.49 -0.40 0.74 16 38 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 354.40 15.07 5.34 5.34 Total: -1.00 -36.12 354.40 -7.96 -44.08 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -2.86 Total: 10.47 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -1.43 Total: -8.60 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.74 Total: -40.45 kcal Atomic # 8 Polarization: -55.79 SS G_CDS: -2.80 Total: -58.59 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.85 Total: 15.17 kcal Atomic # 16 Polarization: 35.11 SS G_CDS: -0.61 Total: 34.49 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.50 Total: -1.93 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.12 -7.96 -44.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004286679.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.422 kcal (2) G-P(sol) polarization free energy of solvation -36.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds