Wall clock time and date at job start Tue Mar 31 2020 06:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21272 * 119.99935 * 2 1 4 4 C 1.47029 * 119.99985 * 179.97438 * 2 1 3 5 5 C 1.40028 * 120.01367 * 179.97438 * 4 2 1 6 6 C 1.36548 * 119.98700 * 179.97438 * 5 4 2 7 7 C 1.39913 * 120.01795 * 359.97438 * 6 5 4 8 8 N 1.36586 * 119.99455 * 179.97438 * 7 6 5 9 9 N 1.28992 * 120.00554 * 180.02562 * 8 7 6 10 10 C 1.36244 * 120.00010 * 180.02562 * 9 8 7 11 11 C 1.40024 * 120.23764 * 0.02562 * 10 9 8 12 12 C 1.36266 * 119.91172 * 180.37614 * 11 10 9 13 13 C 1.39984 * 120.78070 * 359.49646 * 12 11 10 14 14 C 1.38772 * 119.62538 * 0.30411 * 13 12 11 15 15 C 1.38121 * 119.94124 * 0.02562 * 14 13 12 16 16 C 1.50819 * 122.01444 * 180.23380 * 14 13 12 17 17 C 1.53041 * 109.64020 * 344.51383 * 16 14 13 18 18 C 1.53381 * 107.90128 * 47.13605 * 17 16 14 19 19 N 1.38927 * 117.50050 * 179.83661 * 13 12 11 20 20 C 1.46895 * 110.99865 * 285.72328 * 19 13 12 21 21 C 1.50693 * 109.47292 * 167.39536 * 20 19 13 22 22 H 1.08000 * 120.00211 * 4.86747 * 21 20 19 23 23 C 1.37878 * 120.00375 * 184.86217 * 21 20 19 24 24 N 1.31514 * 119.99579 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00340 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46839 * 60.00394 * 25 23 21 27 27 H 1.48497 * 109.46851 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47081 * 300.00233 * 25 23 21 29 29 C 1.39922 * 120.02070 * 0.27550 * 7 6 5 30 30 C 1.36551 * 120.01246 * 359.44292 * 29 7 6 31 31 H 1.09000 * 109.47311 * 269.99767 * 1 2 3 32 32 H 1.09000 * 109.47077 * 29.99966 * 1 2 3 33 33 H 1.09003 * 109.47210 * 150.00104 * 1 2 3 34 34 H 1.08002 * 120.00586 * 359.95962 * 5 4 2 35 35 H 1.08007 * 119.99208 * 179.97438 * 6 5 4 36 36 H 1.08001 * 120.04499 * 0.09080 * 11 10 9 37 37 H 1.08007 * 119.60986 * 179.78055 * 12 11 10 38 38 H 1.07998 * 119.89359 * 179.97438 * 15 14 13 39 39 H 1.09001 * 109.44163 * 104.56078 * 16 14 13 40 40 H 1.08999 * 109.44538 * 224.49461 * 16 14 13 41 41 H 1.09003 * 109.78087 * 166.74024 * 17 16 14 42 42 H 1.09004 * 109.77677 * 287.48266 * 17 16 14 43 43 H 1.09000 * 109.60315 * 51.47730 * 18 17 16 44 44 H 1.08998 * 109.60662 * 171.96925 * 18 17 16 45 45 H 1.09009 * 109.46856 * 287.39054 * 20 19 13 46 46 H 1.08993 * 109.47425 * 47.38956 * 20 19 13 47 47 H 0.97009 * 119.99840 * 179.97438 * 24 23 21 48 48 H 1.08004 * 119.99251 * 179.72461 * 29 7 6 49 49 H 1.08003 * 120.00681 * 180.26889 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 6 2.2421 -1.2733 0.0006 5 6 3.6424 -1.2737 0.0000 6 6 4.3246 -2.4565 0.0011 7 6 3.6248 -3.6681 0.0033 8 7 4.3077 -4.8510 0.0038 9 7 3.6628 -5.9681 0.0053 10 6 4.3440 -7.1480 0.0063 11 6 5.7443 -7.1538 0.0063 12 6 6.4189 -8.3377 -0.0004 13 6 5.7287 -9.5555 0.0033 14 6 4.3410 -9.5576 0.0074 15 6 3.6499 -8.3617 0.0074 16 6 3.5434 -10.8375 0.0167 17 6 4.4490 -12.0108 -0.3645 18 6 5.7408 -11.8947 0.4543 19 7 6.4844 -10.7212 -0.0075 20 6 7.0693 -10.9571 -1.3342 21 6 8.1165 -12.0363 -1.2369 22 1 8.2720 -12.5553 -0.3026 23 6 8.8763 -12.3613 -2.3406 24 7 8.6873 -11.7291 -3.4782 25 14 10.1750 -13.6987 -2.2197 26 1 9.5309 -14.9809 -1.8374 27 1 10.8483 -13.8549 -3.5340 28 1 11.1784 -13.3228 -1.1916 29 6 2.2256 -3.6684 -0.0015 30 6 1.5423 -2.4861 0.0033 31 1 -0.3634 0.0000 1.0277 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3634 -0.8900 -0.5138 34 1 4.1827 -0.3385 -0.0015 35 1 5.4047 -2.4569 0.0002 36 1 6.2888 -6.2211 0.0070 37 1 7.4990 -8.3364 -0.0039 38 1 2.5699 -8.3642 0.0102 39 1 3.1351 -11.0034 1.0137 40 1 2.7271 -10.7616 -0.7016 41 1 3.9499 -12.9521 -0.1344 42 1 4.6809 -11.9671 -1.4287 43 1 5.4954 -11.7800 1.5101 44 1 6.3457 -12.7902 0.3121 45 1 6.2871 -11.2712 -2.0254 46 1 7.5278 -10.0376 -1.6979 47 1 9.2221 -11.9575 -4.2547 48 1 1.6859 -4.6039 -0.0043 49 1 0.4623 -2.4865 0.0040 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004344379.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:33 Heat of formation + Delta-G solvation = 74.088786 kcal Electronic energy + Delta-G solvation = -30176.737204 eV Core-core repulsion = 26069.729882 eV Total energy + Delta-G solvation = -4107.007321 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.49715 -40.30374 -39.02221 -37.78800 -35.89513 -33.83968 -32.80017 -32.46901 -31.65388 -30.45221 -29.94454 -29.04505 -27.35345 -26.19209 -24.33601 -23.32385 -22.96629 -22.78511 -21.56390 -21.21308 -20.10966 -18.91033 -17.60585 -17.01965 -16.63188 -16.31969 -16.01961 -15.54727 -15.37533 -15.12018 -14.78005 -14.63327 -14.52707 -14.34986 -14.19090 -13.98172 -13.78490 -13.59630 -13.43206 -13.00846 -12.94195 -12.77320 -12.59891 -12.55402 -12.39863 -12.31009 -11.95038 -11.61833 -11.37521 -11.30179 -11.01493 -10.91976 -10.79541 -10.59273 -10.33472 -10.14780 -10.13267 -9.66079 -9.43355 -9.27080 -8.95035 -8.68819 -8.62343 -8.26234 -7.12618 -6.20283 -4.24026 -0.57002 0.88061 1.11166 1.60394 1.95461 2.64378 3.23356 3.28801 3.30600 3.45125 3.60406 3.68972 4.03323 4.26570 4.40576 4.51526 4.59055 4.65385 4.86546 4.93388 4.96374 4.99319 5.02832 5.10781 5.13126 5.16189 5.26943 5.31331 5.42036 5.42461 5.48325 5.65380 5.69612 5.74300 5.82356 5.92962 5.97960 6.01183 6.04813 6.08992 6.15816 6.22471 6.36544 6.40825 6.52388 6.57438 6.66535 6.76355 6.97730 7.03514 7.14542 7.16575 7.57981 7.80285 7.90461 8.09409 8.27478 8.80533 9.40809 10.89969 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.019229 B = 0.001632 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.819678 B =17152.034736 C =18148.630166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.396 3.604 3 O -0.461 6.461 4 C -0.173 4.173 5 C -0.059 4.059 6 C -0.089 4.089 7 C 0.107 3.893 8 N -0.268 5.268 9 N -0.171 5.171 10 C -0.013 4.013 11 C -0.063 4.063 12 C -0.141 4.141 13 C 0.198 3.802 14 C -0.153 4.153 15 C -0.014 4.014 16 C -0.071 4.071 17 C -0.158 4.158 18 C 0.059 3.941 19 N -0.497 5.497 20 C 0.201 3.799 21 C -0.520 4.520 22 H 0.066 0.934 23 C 0.061 3.939 24 N -0.893 5.893 25 Si 0.901 3.099 26 H -0.276 1.276 27 H -0.287 1.287 28 H -0.275 1.275 29 C -0.133 4.133 30 C -0.070 4.070 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.130 0.870 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.098 0.902 45 H 0.008 0.992 46 H 0.041 0.959 47 H 0.265 0.735 48 H 0.141 0.859 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.652 13.786 7.569 22.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.274 3.726 3 O -0.337 6.337 4 C -0.175 4.175 5 C -0.078 4.078 6 C -0.112 4.112 7 C 0.003 3.997 8 N -0.148 5.148 9 N -0.050 5.050 10 C -0.122 4.122 11 C -0.086 4.086 12 C -0.162 4.162 13 C 0.094 3.906 14 C -0.157 4.157 15 C -0.038 4.038 16 C -0.108 4.108 17 C -0.197 4.197 18 C -0.068 4.068 19 N -0.209 5.209 20 C 0.080 3.920 21 C -0.559 4.559 22 H 0.084 0.916 23 C -0.142 4.142 24 N -0.531 5.531 25 Si 0.729 3.271 26 H -0.201 1.201 27 H -0.212 1.212 28 H -0.200 1.200 29 C -0.156 4.156 30 C -0.089 4.089 31 H 0.116 0.884 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.157 0.843 35 H 0.158 0.842 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.148 0.852 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.116 0.884 45 H 0.026 0.974 46 H 0.060 0.940 47 H 0.075 0.925 48 H 0.159 0.841 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.833 14.383 7.663 22.722 hybrid contribution 0.157 -0.907 -0.516 1.055 sum -15.675 13.476 7.148 21.873 Atomic orbital electron populations 1.22246 0.93756 1.05002 1.04837 1.22481 0.91702 0.87568 0.70807 1.90544 1.72169 1.34354 1.36645 1.20627 0.94695 0.94777 1.07447 1.21049 0.93053 0.98513 0.95150 1.20733 1.00951 0.89839 0.99652 1.19372 0.91265 0.91327 0.97749 1.72887 1.34391 0.96059 1.11482 1.72125 1.36592 0.97153 0.99137 1.18590 0.91603 0.89711 1.12323 1.21498 0.93925 0.98872 0.94342 1.20892 1.01127 0.90523 1.03656 1.19296 0.89952 0.92353 0.88967 1.19901 0.93306 0.95243 1.07299 1.20826 0.99583 0.89410 0.93949 1.20468 0.97260 0.91378 1.01699 1.22190 0.97443 0.97684 1.02388 1.22193 0.92887 0.94314 0.97452 1.58553 1.31392 1.01017 1.29935 1.19970 0.93994 0.98343 0.79695 1.21057 1.18735 1.19041 0.97028 0.91599 1.24969 0.97314 0.96785 0.95144 1.69940 1.40619 1.41353 1.01227 0.86503 0.81512 0.81797 0.77305 1.20126 1.21230 1.20043 1.21710 0.94518 0.99347 1.00012 1.21146 1.00235 0.91232 0.96321 0.88382 0.89384 0.89406 0.84306 0.84226 0.84690 0.84733 0.85197 0.90915 0.90812 0.91033 0.90434 0.91783 0.88406 0.97399 0.94046 0.92535 0.84137 0.84787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.98 9.74 36.00 0.35 -0.63 16 2 C 0.40 3.45 7.22 -30.75 -0.22 3.23 16 3 O -0.46 -5.56 17.07 5.56 0.10 -5.46 16 4 C -0.17 -1.57 5.87 -104.99 -0.62 -2.19 16 5 C -0.06 -0.57 9.54 -39.52 -0.38 -0.95 16 6 C -0.09 -0.94 9.93 -39.56 -0.39 -1.33 16 7 C 0.11 1.31 6.67 -84.49 -0.56 0.75 16 8 N -0.27 -3.82 10.04 32.22 0.32 -3.50 16 9 N -0.17 -2.49 10.01 32.16 0.32 -2.16 16 10 C -0.01 -0.20 6.67 -84.65 -0.56 -0.76 16 11 C -0.06 -0.99 9.41 -39.62 -0.37 -1.36 16 12 C -0.14 -2.43 9.09 -39.64 -0.36 -2.79 16 13 C 0.20 3.53 5.13 -83.79 -0.43 3.10 16 14 C -0.15 -2.34 5.74 -104.41 -0.60 -2.94 16 15 C -0.01 -0.19 9.58 -39.03 -0.37 -0.57 16 16 C -0.07 -0.92 5.80 -27.80 -0.16 -1.08 16 17 C -0.16 -2.35 6.03 -26.51 -0.16 -2.51 16 18 C 0.06 1.00 5.66 -3.90 -0.02 0.98 16 19 N -0.50 -9.82 4.46 -172.59 -0.77 -10.59 16 20 C 0.20 4.77 4.52 -4.98 -0.02 4.75 16 21 C -0.52 -13.42 8.44 -34.44 -0.29 -13.71 16 22 H 0.07 1.66 7.00 -52.49 -0.37 1.30 16 23 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 24 N -0.89 -25.04 13.29 55.43 0.74 -24.30 16 25 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 26 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 29 C -0.13 -1.38 9.41 -39.56 -0.37 -1.75 16 30 C -0.07 -0.57 9.30 -39.52 -0.37 -0.94 16 31 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.28 6.46 -51.93 -0.34 -0.06 16 34 H 0.14 1.24 7.63 -52.49 -0.40 0.84 16 35 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 36 H 0.14 2.00 7.38 -52.49 -0.39 1.61 16 37 H 0.13 2.36 8.06 -52.48 -0.42 1.93 16 38 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.08 1.35 6.35 -51.93 -0.33 1.02 16 43 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 44 H 0.10 1.79 6.50 -51.93 -0.34 1.45 16 45 H 0.01 0.21 6.32 -51.92 -0.33 -0.12 16 46 H 0.04 1.08 7.50 -51.93 -0.39 0.69 16 47 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 48 H 0.14 1.41 7.36 -52.48 -0.39 1.02 16 49 H 0.13 0.66 6.34 -52.48 -0.33 0.32 16 LS Contribution 405.13 15.07 6.11 6.11 Total: -1.00 -30.12 405.13 -10.76 -40.88 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -6.53 Total: 2.83 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -6.02 Total: -19.19 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.61 Total: -40.54 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: 0.10 Total: -5.46 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.12 -10.76 -40.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004344379.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.967 kcal (2) G-P(sol) polarization free energy of solvation -30.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds