Wall clock time and date at job start Tue Mar 31 2020 05:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 120.00061 * 2 1 4 4 H 1.48502 * 109.46944 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47142 * 29.99532 * 3 2 1 6 6 H 1.48498 * 109.47221 * 150.00097 * 3 2 1 7 7 C 1.37883 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00208 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99878 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47031 * 179.97438 * 9 7 2 11 11 C 1.46505 * 119.99797 * 85.00418 * 10 9 7 12 12 C 1.50700 * 109.47164 * 83.60388 * 11 10 9 13 13 C 1.34520 * 125.79053 * 95.26871 * 12 11 10 14 14 C 1.41381 * 106.84090 * 180.02562 * 13 12 11 15 15 C 1.34518 * 106.84082 * 359.97438 * 14 13 12 16 16 O 1.34302 * 108.42142 * 359.73591 * 15 14 13 17 17 S 1.65598 * 120.00243 * 265.27498 * 10 9 7 18 18 O 1.42095 * 106.40376 * 209.22181 * 17 10 9 19 19 O 1.42101 * 106.40315 * 342.14272 * 17 10 9 20 20 C 1.76196 * 107.21637 * 95.68372 * 17 10 9 21 21 C 1.35592 * 120.30745 * 112.99580 * 20 17 10 22 22 C 1.40072 * 121.94968 * 179.97438 * 21 20 17 23 23 C 1.35597 * 121.93895 * 359.97438 * 22 21 20 24 24 C 1.40836 * 119.39345 * 0.02562 * 23 22 21 25 25 N 1.31015 * 138.56337 * 180.02562 * 24 23 22 26 26 O 1.21481 * 109.08458 * 179.34400 * 25 24 23 27 27 N 1.21468 * 116.28529 * 0.61926 * 26 25 24 28 28 C 1.31018 * 109.09062 * 359.47660 * 27 26 25 29 29 H 0.96997 * 120.00052 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.46627 * 60.00144 * 9 7 2 31 31 H 1.09004 * 109.47255 * 300.00342 * 9 7 2 32 32 H 1.08996 * 109.47130 * 203.60438 * 11 10 9 33 33 H 1.08992 * 109.46961 * 323.60436 * 11 10 9 34 34 H 1.07992 * 126.57568 * 0.03758 * 13 12 11 35 35 H 1.07995 * 126.58315 * 179.97438 * 14 13 12 36 36 H 1.08000 * 125.78823 * 180.02562 * 15 14 13 37 37 H 1.07999 * 119.02802 * 359.97438 * 21 20 17 38 38 H 1.08002 * 119.03014 * 180.02562 * 22 21 20 39 39 H 1.08007 * 120.29995 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6126 0.0015 11 6 2.7640 -4.0970 1.2652 12 6 1.8036 -5.0684 1.9016 13 6 1.8454 -6.4077 1.7832 14 6 0.7643 -6.9195 2.5370 15 6 0.1268 -5.8623 3.0714 16 8 0.7643 -4.7441 2.6881 17 16 2.6503 -4.3194 -1.4278 18 8 2.9618 -5.6725 -1.1261 19 8 1.6707 -3.9424 -2.3857 20 6 4.1587 -3.5626 -1.9343 21 6 5.3090 -4.2799 -1.9604 22 6 6.5269 -3.7133 -2.3575 23 6 6.6240 -2.4157 -2.7387 24 6 5.4710 -1.6068 -2.7376 25 7 5.1379 -0.3710 -3.0174 26 8 3.9451 -0.2303 -2.8356 27 7 3.3420 -1.2082 -2.4415 28 6 4.1795 -2.2086 -2.3214 29 1 -0.4850 0.8400 0.0004 30 1 0.6241 -2.5575 -0.8881 31 1 0.6247 -2.5563 0.8920 32 1 3.7131 -4.5974 1.0733 33 1 2.9269 -3.2543 1.9370 34 1 2.5665 -6.9818 1.2206 35 1 0.5007 -7.9595 2.6602 36 1 -0.7466 -5.9057 3.7052 37 1 5.2856 -5.3188 -1.6663 38 1 7.4147 -4.3284 -2.3610 39 1 7.5769 -2.0059 -3.0397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004364039.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:48 Heat of formation + Delta-G solvation = 105.381391 kcal Electronic energy + Delta-G solvation = -31610.511902 eV Core-core repulsion = 27232.806197 eV Total energy + Delta-G solvation = -4377.705705 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 363.077 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -46.28443 -42.16639 -38.71051 -36.88440 -36.04050 -35.43450 -34.47723 -33.01483 -32.81390 -32.45196 -31.38039 -30.08690 -27.18157 -25.83370 -25.05046 -24.67908 -22.60488 -21.77201 -21.32738 -20.24985 -19.31351 -18.53967 -18.37736 -17.82488 -17.35801 -16.89734 -16.72002 -16.25263 -15.89429 -15.50884 -15.29723 -14.68439 -14.33565 -14.31607 -13.60716 -13.16018 -13.08681 -12.97917 -12.88947 -12.55360 -12.43510 -12.32012 -12.14603 -12.08856 -11.73932 -11.66028 -11.60783 -11.36517 -11.16013 -11.07115 -10.90182 -10.59772 -10.52300 -10.12109 -9.96818 -9.73304 -9.57294 -8.85012 -8.44602 -8.35805 -8.14676 -6.08771 -4.10826 -0.19835 0.75461 1.21301 2.02440 2.06870 2.89121 3.06359 3.28276 3.30754 3.34671 3.36380 3.37898 3.50676 3.69179 4.03084 4.06932 4.40102 4.57286 4.64402 4.84632 4.99749 5.05637 5.11453 5.13396 5.29776 5.34909 5.43556 5.47127 5.66419 5.82320 5.85129 5.85957 6.08420 6.11268 6.28364 6.32012 6.42588 6.84750 7.17091 7.36129 7.50928 7.54375 7.83554 8.11827 8.80216 8.84531 9.51376 10.99907 Molecular weight = 363.08amu Principal moments of inertia in cm(-1) A = 0.009388 B = 0.005711 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.916387 B = 4902.053628 C = 7041.548244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.078 3.922 3 Si 0.874 3.126 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.243 3.757 10 N -0.972 5.972 11 C 0.208 3.792 12 C -0.020 4.020 13 C -0.199 4.199 14 C -0.222 4.222 15 C -0.044 4.044 16 O -0.163 6.163 17 S 2.686 3.314 18 O -0.965 6.965 19 O -0.935 6.935 20 C -0.610 4.610 21 C 0.018 3.982 22 C -0.118 4.118 23 C -0.016 4.016 24 C -0.001 4.001 25 N -0.356 5.356 26 O 0.380 5.620 27 N -0.262 5.262 28 C 0.055 3.945 29 H 0.265 0.735 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.153 0.847 35 H 0.144 0.856 36 H 0.198 0.802 37 H 0.159 0.841 38 H 0.150 0.850 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.276 -10.575 0.472 15.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.126 4.126 3 Si 0.701 3.299 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.071 0.929 9 C 0.122 3.878 10 N -0.810 5.810 11 C 0.081 3.919 12 C -0.073 4.073 13 C -0.219 4.219 14 C -0.241 4.241 15 C -0.113 4.113 16 O -0.058 6.058 17 S 2.772 3.228 18 O -0.956 6.956 19 O -0.925 6.925 20 C -0.695 4.695 21 C -0.005 4.005 22 C -0.140 4.140 23 C -0.036 4.036 24 C -0.155 4.155 25 N -0.079 5.079 26 O 0.139 5.861 27 N 0.023 4.977 28 C -0.100 4.100 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.171 0.829 35 H 0.161 0.839 36 H 0.214 0.786 37 H 0.177 0.823 38 H 0.167 0.833 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 10.047 -9.726 -0.106 13.984 hybrid contribution 1.428 0.543 0.262 1.550 sum 11.475 -9.184 0.157 14.698 Atomic orbital electron populations 1.69905 1.05929 1.27125 1.49071 1.24750 0.94607 0.98681 0.94573 0.86861 0.79836 0.84047 0.79165 1.19130 1.20956 1.20234 1.21263 0.92765 0.90593 1.51473 0.92890 1.19397 0.87062 0.81174 1.00147 1.57574 1.56715 1.49421 1.17335 1.19474 0.91020 0.95320 0.86041 1.23045 0.91824 0.95174 0.97235 1.21750 1.02037 0.93714 1.04394 1.21795 0.98830 0.99832 1.03656 1.24016 0.99975 0.83479 1.03835 1.84103 1.35225 1.34450 1.52025 1.02371 0.73443 0.73184 0.73776 1.93528 1.85434 1.31805 1.84786 1.93613 1.55857 1.83370 1.59701 1.30273 1.22553 1.00593 1.16123 1.21020 0.90411 1.00193 0.88904 1.21068 0.98475 0.94952 0.99552 1.20155 0.95334 0.92259 0.95899 1.22898 0.97945 0.90454 1.04181 1.75165 0.96862 1.17178 1.18703 1.85514 1.13218 1.32908 1.54455 1.76007 1.18006 0.93929 1.09721 1.21709 0.89204 0.95357 1.03702 0.92522 0.92485 0.93509 0.88408 0.87977 0.82914 0.83867 0.78568 0.82321 0.83271 0.83485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.19 13.29 55.43 0.74 -24.45 16 2 C 0.08 2.11 5.46 -17.82 -0.10 2.01 16 3 Si 0.87 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -13.44 7.32 -34.44 -0.25 -13.69 16 8 H 0.05 1.34 6.89 -52.49 -0.36 0.98 16 9 C 0.24 5.99 5.40 -5.20 -0.03 5.96 16 10 N -0.97 -19.55 2.75 -116.95 -0.32 -19.87 16 11 C 0.21 3.47 5.89 -5.19 -0.03 3.44 16 12 C -0.02 -0.35 6.89 -35.62 -0.25 -0.59 16 13 C -0.20 -3.12 10.72 -39.70 -0.43 -3.54 16 14 C -0.22 -3.10 10.91 -39.70 -0.43 -3.54 16 15 C -0.04 -0.63 12.09 29.42 0.36 -0.27 16 16 O -0.16 -2.90 10.65 5.70 0.06 -2.84 16 17 S 2.69 51.68 5.58 -107.50 -0.60 51.08 16 18 O -0.97 -17.07 15.98 -57.17 -0.91 -17.99 16 19 O -0.94 -21.81 16.38 -57.17 -0.94 -22.75 16 20 C -0.61 -10.31 5.92 -39.54 -0.23 -10.55 16 21 C 0.02 0.22 9.45 -39.84 -0.38 -0.16 16 22 C -0.12 -1.13 9.90 -39.84 -0.39 -1.52 16 23 C -0.02 -0.19 10.08 -39.54 -0.40 -0.58 16 24 C 0.00 -0.01 7.76 -83.03 -0.64 -0.66 16 25 N -0.36 -6.45 12.29 31.88 0.39 -6.06 16 26 O 0.38 7.79 11.67 26.94 0.31 8.10 16 27 N -0.26 -5.79 9.64 31.88 0.31 -5.48 16 28 C 0.06 1.06 7.00 -83.03 -0.58 0.48 16 29 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.06 1.57 6.88 -51.92 -0.36 1.21 16 31 H 0.05 1.22 8.11 -51.93 -0.42 0.80 16 32 H 0.10 1.27 7.72 -51.93 -0.40 0.87 16 33 H 0.10 1.69 8.12 -51.93 -0.42 1.27 16 34 H 0.15 2.22 8.04 -52.49 -0.42 1.80 16 35 H 0.14 1.59 8.06 -52.49 -0.42 1.16 16 36 H 0.20 1.98 8.06 -52.49 -0.42 1.55 16 37 H 0.16 1.48 7.24 -52.49 -0.38 1.11 16 38 H 0.15 0.76 8.06 -52.49 -0.42 0.33 16 39 H 0.15 1.16 8.06 -52.48 -0.42 0.74 16 LS Contribution 357.41 15.07 5.39 5.39 Total: -1.00 -33.87 357.41 -7.97 -41.84 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -3.59 Total: 0.23 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: -3.79 Total: -23.21 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: 1.11 Total: -55.86 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -1.48 Total: -35.47 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 51.68 SS G_CDS: -0.60 Total: 51.08 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.87 -7.97 -41.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004364039.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.220 kcal (2) G-P(sol) polarization free energy of solvation -33.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds