Wall clock time and date at job start Tue Mar 31 2020 05:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 120.00061 * 2 1 4 4 H 1.48502 * 109.46944 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47142 * 29.99532 * 3 2 1 6 6 H 1.48498 * 109.47221 * 150.00097 * 3 2 1 7 7 C 1.37883 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00208 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99878 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47031 * 179.97438 * 9 7 2 11 11 C 1.46505 * 119.99797 * 85.00418 * 10 9 7 12 12 C 1.50700 * 109.47164 * 83.60388 * 11 10 9 13 13 C 1.34520 * 125.79053 * 95.26871 * 12 11 10 14 14 C 1.41381 * 106.84090 * 180.02562 * 13 12 11 15 15 C 1.34518 * 106.84082 * 359.97438 * 14 13 12 16 16 O 1.34302 * 108.42142 * 359.73591 * 15 14 13 17 17 S 1.65598 * 120.00243 * 265.27498 * 10 9 7 18 18 O 1.42095 * 106.40376 * 209.22181 * 17 10 9 19 19 O 1.42101 * 106.40315 * 342.14272 * 17 10 9 20 20 C 1.76196 * 107.21637 * 95.68372 * 17 10 9 21 21 C 1.35592 * 120.30745 * 112.99580 * 20 17 10 22 22 C 1.40072 * 121.94968 * 179.97438 * 21 20 17 23 23 C 1.35597 * 121.93895 * 359.97438 * 22 21 20 24 24 C 1.40836 * 119.39345 * 0.02562 * 23 22 21 25 25 N 1.31015 * 138.56337 * 180.02562 * 24 23 22 26 26 O 1.21481 * 109.08458 * 179.34400 * 25 24 23 27 27 N 1.21468 * 116.28529 * 0.61926 * 26 25 24 28 28 C 1.31018 * 109.09062 * 359.47660 * 27 26 25 29 29 H 0.96997 * 120.00052 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.46627 * 60.00144 * 9 7 2 31 31 H 1.09004 * 109.47255 * 300.00342 * 9 7 2 32 32 H 1.08996 * 109.47130 * 203.60438 * 11 10 9 33 33 H 1.08992 * 109.46961 * 323.60436 * 11 10 9 34 34 H 1.07992 * 126.57568 * 0.03758 * 13 12 11 35 35 H 1.07995 * 126.58315 * 179.97438 * 14 13 12 36 36 H 1.08000 * 125.78823 * 180.02562 * 15 14 13 37 37 H 1.07999 * 119.02802 * 359.97438 * 21 20 17 38 38 H 1.08002 * 119.03014 * 180.02562 * 22 21 20 39 39 H 1.08007 * 120.29995 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6126 0.0015 11 6 2.7640 -4.0970 1.2652 12 6 1.8036 -5.0684 1.9016 13 6 1.8454 -6.4077 1.7832 14 6 0.7643 -6.9195 2.5370 15 6 0.1268 -5.8623 3.0714 16 8 0.7643 -4.7441 2.6881 17 16 2.6503 -4.3194 -1.4278 18 8 2.9618 -5.6725 -1.1261 19 8 1.6707 -3.9424 -2.3857 20 6 4.1587 -3.5626 -1.9343 21 6 5.3090 -4.2799 -1.9604 22 6 6.5269 -3.7133 -2.3575 23 6 6.6240 -2.4157 -2.7387 24 6 5.4710 -1.6068 -2.7376 25 7 5.1379 -0.3710 -3.0174 26 8 3.9451 -0.2303 -2.8356 27 7 3.3420 -1.2082 -2.4415 28 6 4.1795 -2.2086 -2.3214 29 1 -0.4850 0.8400 0.0004 30 1 0.6241 -2.5575 -0.8881 31 1 0.6247 -2.5563 0.8920 32 1 3.7131 -4.5974 1.0733 33 1 2.9269 -3.2543 1.9370 34 1 2.5665 -6.9818 1.2206 35 1 0.5007 -7.9595 2.6602 36 1 -0.7466 -5.9057 3.7052 37 1 5.2856 -5.3188 -1.6663 38 1 7.4147 -4.3284 -2.3610 39 1 7.5769 -2.0059 -3.0397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004364039.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:48 Heat of formation + Delta-G solvation = 80.678695 kcal Electronic energy + Delta-G solvation = -31611.583091 eV Core-core repulsion = 27232.806197 eV Total energy + Delta-G solvation = -4378.776894 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 363.077 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -47.61360 -43.37142 -39.80741 -38.41142 -37.63307 -36.99691 -35.80388 -34.67079 -34.23352 -33.78293 -32.47529 -31.50251 -28.93847 -26.98174 -26.52303 -25.90774 -24.41168 -23.09508 -22.52551 -21.48655 -20.42048 -19.93019 -19.83186 -19.17556 -18.79320 -18.51468 -18.00488 -17.88653 -17.37164 -16.65766 -16.54389 -16.43258 -15.64166 -15.59141 -15.21145 -14.60262 -14.33364 -14.13169 -14.06183 -13.95092 -13.75218 -13.59057 -13.54444 -13.32773 -13.22693 -13.19848 -13.08542 -12.95772 -12.86517 -12.66763 -12.52596 -12.44214 -12.09123 -11.81289 -11.72815 -10.96525 -10.75435 -10.54301 -10.06851 -9.98838 -9.36894 -8.16353 -6.23394 -1.33187 -0.68876 0.12180 0.69491 0.84446 1.32888 1.40226 1.41148 1.70507 1.92597 2.08916 2.20017 2.24109 2.36672 2.40807 2.65363 2.78444 3.19225 3.32552 3.59330 3.76327 3.78665 3.91866 4.00072 4.19920 4.25841 4.32595 4.39204 4.52530 4.58537 4.70768 4.84071 4.94344 4.99789 5.13183 5.22700 5.29546 5.36613 5.40419 5.64160 5.74009 5.80609 6.07473 6.34421 6.79445 7.42808 7.43637 8.93662 Molecular weight = 363.08amu Principal moments of inertia in cm(-1) A = 0.009388 B = 0.005711 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.916387 B = 4902.053628 C = 7041.548244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.030 3.970 3 Si 0.922 3.078 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.508 4.508 8 H 0.057 0.943 9 C 0.267 3.733 10 N -0.981 5.981 11 C 0.202 3.798 12 C -0.053 4.053 13 C -0.197 4.197 14 C -0.226 4.226 15 C -0.049 4.049 16 O -0.196 6.196 17 S 2.694 3.306 18 O -0.953 6.953 19 O -0.991 6.991 20 C -0.654 4.654 21 C 0.060 3.940 22 C -0.095 4.095 23 C -0.012 4.012 24 C 0.006 3.994 25 N -0.363 5.363 26 O 0.342 5.658 27 N -0.315 5.315 28 C 0.039 3.961 29 H 0.263 0.737 30 H 0.016 0.984 31 H 0.021 0.979 32 H 0.138 0.862 33 H 0.094 0.906 34 H 0.166 0.834 35 H 0.175 0.825 36 H 0.232 0.768 37 H 0.197 0.803 38 H 0.217 0.783 39 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.950 -13.368 0.731 20.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.170 4.170 3 Si 0.748 3.252 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.548 4.548 8 H 0.075 0.925 9 C 0.143 3.857 10 N -0.818 5.818 11 C 0.077 3.923 12 C -0.105 4.105 13 C -0.217 4.217 14 C -0.245 4.245 15 C -0.116 4.116 16 O -0.093 6.093 17 S 2.786 3.214 18 O -0.944 6.944 19 O -0.982 6.982 20 C -0.745 4.745 21 C 0.037 3.963 22 C -0.117 4.117 23 C -0.031 4.031 24 C -0.150 4.150 25 N -0.090 5.090 26 O 0.112 5.888 27 N -0.033 5.033 28 C -0.116 4.116 29 H 0.073 0.927 30 H 0.034 0.966 31 H 0.039 0.961 32 H 0.156 0.844 33 H 0.112 0.888 34 H 0.184 0.816 35 H 0.193 0.807 36 H 0.248 0.752 37 H 0.214 0.786 38 H 0.234 0.766 39 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 14.667 -12.506 0.182 19.275 hybrid contribution 0.241 1.121 0.126 1.154 sum 14.908 -11.384 0.308 18.760 Atomic orbital electron populations 1.70024 1.07339 1.27565 1.51604 1.25421 0.95158 1.01618 0.94792 0.86088 0.79003 0.80974 0.79169 1.18964 1.20649 1.19440 1.21399 0.92798 0.90868 1.49686 0.92524 1.18723 0.87320 0.82699 0.96921 1.57427 1.56741 1.48215 1.19380 1.19768 0.92480 0.95558 0.84505 1.23188 0.92634 0.95955 0.98702 1.22040 1.02496 0.93189 1.03961 1.22202 0.98048 1.01320 1.02896 1.24855 1.00471 0.82711 1.03612 1.84084 1.36012 1.36379 1.52784 1.01689 0.73781 0.73221 0.72694 1.93519 1.85480 1.30904 1.84475 1.93546 1.59117 1.84240 1.61280 1.29790 1.22898 1.00370 1.21397 1.21796 0.89584 1.01195 0.83744 1.21812 0.99186 0.94556 0.96176 1.20932 0.95106 0.92360 0.94746 1.23625 0.98627 0.89850 1.02890 1.75078 0.96346 1.18393 1.19223 1.85475 1.14042 1.32934 1.56363 1.75882 1.19837 0.95393 1.12196 1.22171 0.90115 0.95883 1.03474 0.92739 0.96567 0.96053 0.84405 0.88775 0.81621 0.80742 0.75159 0.78630 0.76611 0.78943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.25 13.29 21.45 0.28 -55.96 16 2 C 0.03 1.70 5.46 84.66 0.46 2.16 16 3 Si 0.92 44.98 29.54 68.60 2.03 47.01 16 4 H -0.26 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 6 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.51 -27.65 7.32 25.60 0.19 -27.46 16 8 H 0.06 2.98 6.89 -2.91 -0.02 2.96 16 9 C 0.27 14.10 5.40 85.63 0.46 14.56 16 10 N -0.98 -40.85 2.75 -523.92 -1.44 -42.29 16 11 C 0.20 6.76 5.89 85.63 0.50 7.27 16 12 C -0.05 -1.83 6.89 24.83 0.17 -1.65 16 13 C -0.20 -5.87 10.72 22.19 0.24 -5.64 16 14 C -0.23 -5.88 10.91 22.19 0.24 -5.64 16 15 C -0.05 -1.34 12.09 66.97 0.81 -0.53 16 16 O -0.20 -7.14 10.65 -2.52 -0.03 -7.17 16 17 S 2.69 104.40 5.58 -56.49 -0.32 104.08 16 18 O -0.95 -31.94 15.98 -128.00 -2.05 -33.99 16 19 O -0.99 -49.07 16.38 -128.00 -2.10 -51.17 16 20 C -0.65 -20.91 5.92 22.29 0.13 -20.78 16 21 C 0.06 1.11 9.45 22.10 0.21 1.32 16 22 C -0.09 -1.08 9.90 22.10 0.22 -0.86 16 23 C -0.01 -0.20 10.08 22.29 0.22 0.03 16 24 C 0.01 0.17 7.76 42.62 0.33 0.50 16 25 N -0.36 -13.06 12.29 -57.45 -0.71 -13.77 16 26 O 0.34 14.62 11.67 139.34 1.63 16.25 16 27 N -0.31 -14.52 9.64 -57.44 -0.55 -15.08 16 28 C 0.04 1.51 7.00 42.62 0.30 1.81 16 29 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 30 H 0.02 0.99 6.88 -2.38 -0.02 0.97 16 31 H 0.02 1.21 8.11 -2.38 -0.02 1.20 16 32 H 0.14 3.31 7.72 -2.39 -0.02 3.29 16 33 H 0.09 3.22 8.12 -2.39 -0.02 3.20 16 34 H 0.17 4.38 8.04 -2.91 -0.02 4.35 16 35 H 0.18 3.31 8.06 -2.91 -0.02 3.29 16 36 H 0.23 4.26 8.06 -2.91 -0.02 4.24 16 37 H 0.20 2.25 7.24 -2.91 -0.02 2.23 16 38 H 0.22 -0.17 8.06 -2.91 -0.02 -0.20 16 39 H 0.19 1.57 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -84.44 357.41 2.36 -82.08 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: 1.12 Total: 4.91 kcal Atomic # 6 Polarization: -39.40 SS G_CDS: 4.49 Total: -34.91 kcal Atomic # 7 Polarization: -124.68 SS G_CDS: -2.42 Total: -127.10 kcal Atomic # 8 Polarization: -73.54 SS G_CDS: -2.54 Total: -76.08 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 16 Polarization: 104.40 SS G_CDS: -0.32 Total: 104.08 kcal Total: -84.44 2.36 -82.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004364039.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.760 kcal (2) G-P(sol) polarization free energy of solvation -84.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds