Wall clock time and date at job start Tue Mar 31 2020 05:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35871 * 117.00117 * 2 1 4 4 C 1.38870 * 119.90950 * 180.02562 * 3 2 1 5 5 C 1.37835 * 120.09353 * 179.97438 * 4 3 2 6 6 C 1.39647 * 119.90641 * 0.02562 * 5 4 3 7 7 C 1.47713 * 120.09089 * 179.97438 * 6 5 4 8 8 N 1.31085 * 126.30348 * 359.68758 * 7 6 5 9 9 N 1.28656 * 109.41947 * 179.88938 * 8 7 6 10 10 C 1.31258 * 109.44601 * 0.37911 * 9 8 7 11 11 S 1.76205 * 126.28303 * 179.78916 * 10 9 8 12 12 C 1.81002 * 99.99924 * 359.97438 * 11 10 9 13 13 C 1.50696 * 109.47322 * 179.97438 * 12 11 10 14 14 O 1.21280 * 119.99783 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00394 * 180.02562 * 13 12 11 16 16 C 1.46500 * 119.99604 * 359.97438 * 15 13 12 17 17 C 1.46496 * 120.00437 * 180.02562 * 15 13 12 18 18 C 1.50702 * 109.46919 * 89.99520 * 17 15 13 19 19 H 1.07997 * 120.00287 * 0.02562 * 18 17 15 20 20 C 1.37880 * 119.99885 * 180.02562 * 18 17 15 21 21 N 1.31520 * 120.00084 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00154 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47013 * 89.99543 * 22 20 18 24 24 H 1.48498 * 109.47471 * 210.00151 * 22 20 18 25 25 H 1.48503 * 109.47185 * 330.00446 * 22 20 18 26 26 O 1.34695 * 107.43541 * 359.77099 * 10 9 8 27 27 C 1.39654 * 119.81450 * 359.97438 * 6 5 4 28 28 C 1.37830 * 119.90905 * 359.97438 * 27 6 5 29 29 H 1.09009 * 109.46780 * 299.99397 * 1 2 3 30 30 H 1.08997 * 109.47580 * 59.99361 * 1 2 3 31 31 H 1.08996 * 109.47337 * 179.97438 * 1 2 3 32 32 H 1.08005 * 119.95161 * 0.26439 * 4 3 2 33 33 H 1.07998 * 120.04490 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.47255 * 300.00031 * 12 11 10 35 35 H 1.09010 * 109.46953 * 59.99812 * 12 11 10 36 36 H 1.08994 * 109.47034 * 90.00175 * 16 15 13 37 37 H 1.08999 * 109.47239 * 210.00210 * 16 15 13 38 38 H 1.09003 * 109.47569 * 330.00022 * 16 15 13 39 39 H 1.08994 * 109.47219 * 209.99686 * 17 15 13 40 40 H 1.09005 * 109.46940 * 330.00275 * 17 15 13 41 41 H 0.96995 * 119.99643 * 179.97438 * 21 20 18 42 42 H 1.08004 * 120.04406 * 179.97438 * 27 6 5 43 43 H 1.07998 * 119.95331 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 3.4328 1.2811 -0.0005 5 6 4.0625 2.5072 -0.0011 6 6 3.3038 3.6796 -0.0005 7 6 3.9744 4.9957 -0.0005 8 7 5.2680 5.2076 0.0048 9 7 5.4940 6.4741 0.0005 10 6 4.3523 7.1217 0.0006 11 16 4.1461 8.8717 0.0009 12 6 5.8796 9.3924 0.0019 13 6 5.9521 10.8976 0.0017 14 8 4.9321 11.5537 0.0014 15 7 7.1503 11.5147 0.0018 16 6 8.3823 10.7221 0.0028 17 6 7.2207 12.9780 0.0021 18 6 7.2447 13.4793 1.4231 19 1 7.2113 12.7782 2.2438 20 6 7.3093 14.8333 1.6754 21 7 7.3308 15.2709 2.9155 22 14 7.3663 16.0463 0.2559 23 1 5.9829 16.4342 -0.1196 24 1 8.1249 17.2547 0.6674 25 1 8.0363 15.4140 -0.9089 26 8 3.3672 6.2031 -0.0001 27 6 1.9093 3.6042 0.0000 28 6 1.2875 2.3741 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 4.0188 0.3738 -0.0053 33 1 5.1411 2.5610 -0.0011 34 1 6.3750 9.0046 0.8920 35 1 6.3759 9.0049 -0.8880 36 1 8.6883 10.5250 -1.0246 37 1 9.1692 11.2742 0.5166 38 1 8.2062 9.7773 0.5170 39 1 8.1271 13.2982 -0.5115 40 1 6.3491 13.3838 -0.5116 41 1 7.3766 16.2234 3.0929 42 1 1.3189 4.5086 0.0008 43 1 0.2092 2.3150 -0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004470210.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:08 Heat of formation + Delta-G solvation = 13.221131 kcal Electronic energy + Delta-G solvation = -27766.643300 eV Core-core repulsion = 23520.774322 eV Total energy + Delta-G solvation = -4245.868979 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.17667 -40.68078 -39.24982 -38.09927 -36.36289 -35.16361 -32.76455 -32.64082 -31.79168 -30.61716 -29.69038 -28.07675 -27.85781 -25.96994 -24.77964 -24.18381 -22.84501 -22.48106 -21.89581 -19.38272 -18.84549 -18.33951 -17.59810 -17.32711 -17.04968 -16.81129 -16.68717 -16.33875 -15.97636 -15.50059 -15.41062 -15.01370 -14.37651 -14.21221 -14.06860 -13.92465 -13.46376 -13.28331 -13.16077 -12.98207 -12.65777 -12.55043 -12.42857 -12.30795 -12.13847 -12.12293 -11.96341 -11.67955 -11.54758 -11.39835 -11.01532 -10.71437 -10.71270 -10.56503 -10.21714 -9.65772 -9.64720 -9.40205 -8.86114 -8.64273 -7.93741 -7.81762 -6.13891 -4.14017 0.09568 0.37167 0.75170 1.22515 1.71541 2.17384 2.41252 2.64402 2.99243 3.20956 3.25774 3.31526 3.33505 3.60972 3.80628 4.17194 4.28040 4.34716 4.48717 4.57598 4.61802 4.64637 4.75202 4.80110 4.89519 4.94261 4.98167 5.06619 5.07838 5.18739 5.23726 5.41628 5.53637 5.60926 5.71431 5.76318 5.86670 6.03968 6.09428 6.54972 6.71883 6.81527 7.11868 7.52210 7.95390 7.96626 8.36877 8.62918 8.88963 9.45058 10.99252 Molecular weight = 363.11amu Principal moments of inertia in cm(-1) A = 0.033856 B = 0.001506 C = 0.001476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.845169 B =18590.031113 C =18964.896955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.313 6.313 3 C 0.151 3.849 4 C -0.152 4.152 5 C -0.027 4.027 6 C -0.059 4.059 7 C 0.207 3.793 8 N -0.266 5.266 9 N -0.291 5.291 10 C 0.126 3.874 11 S 0.152 5.848 12 C -0.157 4.157 13 C 0.527 3.473 14 O -0.527 6.527 15 N -0.585 5.585 16 C 0.077 3.923 17 C 0.216 3.784 18 C -0.534 4.534 19 H 0.076 0.924 20 C 0.074 3.926 21 N -0.895 5.895 22 Si 0.876 3.124 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.266 1.266 26 O -0.203 6.203 27 C -0.041 4.041 28 C -0.210 4.210 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.143 0.857 33 H 0.148 0.852 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.051 0.949 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.035 0.965 40 H 0.040 0.960 41 H 0.266 0.734 42 H 0.137 0.863 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.711 -30.435 -8.229 33.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.225 6.225 3 C 0.104 3.896 4 C -0.171 4.171 5 C -0.046 4.046 6 C -0.062 4.062 7 C -0.005 4.005 8 N -0.114 5.114 9 N -0.144 5.144 10 C -0.190 4.190 11 S 0.381 5.619 12 C -0.308 4.308 13 C 0.310 3.690 14 O -0.405 6.405 15 N -0.316 5.316 16 C -0.067 4.067 17 C 0.096 3.904 18 C -0.573 4.573 19 H 0.094 0.906 20 C -0.129 4.129 21 N -0.533 5.533 22 Si 0.703 3.297 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.190 1.190 26 O -0.084 6.084 27 C -0.061 4.061 28 C -0.228 4.228 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.121 0.879 32 H 0.161 0.839 33 H 0.166 0.834 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.076 0.924 42 H 0.155 0.845 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.814 -29.578 -8.114 32.522 hybrid contribution -0.191 0.309 -0.476 0.599 sum -11.005 -29.270 -8.591 32.429 Atomic orbital electron populations 1.23158 0.77777 1.04432 1.01769 1.86097 1.21923 1.26651 1.87866 1.19293 0.92463 0.84329 0.93507 1.20374 0.91287 0.98540 1.06854 1.21010 1.00843 0.89340 0.93411 1.17091 0.92566 0.85666 1.10842 1.25355 0.87975 0.85747 1.01440 1.74400 1.12155 1.08293 1.16547 1.74912 1.21683 0.97956 1.19802 1.30649 0.84266 1.01110 1.02963 1.86892 1.07159 0.78108 1.89748 1.24043 0.97760 0.99594 1.09450 1.19197 0.84749 0.86668 0.78344 1.90735 1.33546 1.65965 1.50232 1.47737 1.04340 1.08867 1.70687 1.21798 0.87938 0.95892 1.01054 1.19768 0.97663 0.74288 0.98701 1.21299 1.51809 0.93067 0.91091 0.90622 1.24850 0.94306 0.98094 0.95619 1.69893 1.49968 1.14730 1.18670 0.86851 0.78868 0.81143 0.82830 1.19824 1.20973 1.19035 1.84998 1.37490 1.14900 1.71011 1.21073 0.92675 0.98225 0.94143 1.21163 1.00624 0.91577 1.09472 0.92217 0.92243 0.87867 0.83888 0.83400 0.85424 0.85675 0.93030 0.89984 0.91773 0.94721 0.94241 0.92449 0.84537 0.84392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.07 9.81 101.05 0.99 1.06 16 2 O -0.31 -2.05 10.49 -19.33 -0.20 -2.25 16 3 C 0.15 1.07 6.69 -39.11 -0.26 0.81 16 4 C -0.15 -1.07 9.97 -39.50 -0.39 -1.47 16 5 C -0.03 -0.22 9.69 -39.20 -0.38 -0.60 16 6 C -0.06 -0.58 5.87 -104.97 -0.62 -1.19 16 7 C 0.21 2.62 7.98 -14.00 -0.11 2.50 16 8 N -0.27 -3.82 11.89 32.08 0.38 -3.44 16 9 N -0.29 -4.37 11.62 30.32 0.35 -4.02 16 10 C 0.13 1.79 8.53 52.52 0.45 2.24 16 11 S 0.15 2.18 21.45 -107.50 -2.31 -0.13 16 12 C -0.16 -2.25 4.26 36.00 0.15 -2.09 16 13 C 0.53 10.11 7.69 -10.99 -0.08 10.02 16 14 O -0.53 -12.17 15.44 5.56 0.09 -12.08 16 15 N -0.58 -11.43 2.86 -182.96 -0.52 -11.96 16 16 C 0.08 1.11 10.24 59.85 0.61 1.72 16 17 C 0.22 5.08 4.23 -5.20 -0.02 5.06 16 18 C -0.53 -14.98 9.94 -34.44 -0.34 -15.33 16 19 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 20 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 21 N -0.89 -27.19 13.96 55.43 0.77 -26.42 16 22 Si 0.88 21.09 27.47 -169.99 -4.67 16.42 16 23 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 25 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 26 O -0.20 -2.72 10.69 2.24 0.02 -2.70 16 27 C -0.04 -0.33 9.72 -39.20 -0.38 -0.71 16 28 C -0.21 -1.36 9.02 -39.49 -0.36 -1.71 16 29 H 0.06 0.13 7.65 -51.92 -0.40 -0.27 16 30 H 0.06 0.13 7.65 -51.93 -0.40 -0.27 16 31 H 0.10 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.14 0.76 8.06 -52.48 -0.42 0.33 16 33 H 0.15 1.12 7.86 -52.49 -0.41 0.71 16 34 H 0.13 1.69 7.40 -51.92 -0.38 1.31 16 35 H 0.13 1.51 8.11 -51.91 -0.42 1.09 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 38 H 0.06 0.78 6.44 -51.93 -0.33 0.44 16 39 H 0.03 0.77 7.13 -51.93 -0.37 0.40 16 40 H 0.04 0.99 6.85 -51.93 -0.36 0.63 16 41 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.14 0.95 7.93 -52.48 -0.42 0.53 16 43 H 0.14 0.56 6.28 -52.49 -0.33 0.23 16 LS Contribution 387.79 15.07 5.84 5.84 Total: -1.00 -35.39 387.79 -6.18 -41.56 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -5.09 Total: -3.19 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -0.84 Total: 2.35 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: 0.98 Total: -45.84 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.09 Total: -17.03 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -2.31 Total: -0.13 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.39 -6.18 -41.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004470210.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.785 kcal (2) G-P(sol) polarization free energy of solvation -35.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds