Wall clock time and date at job start Tue Mar 31 2020 05:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35871 * 117.00117 * 2 1 4 4 C 1.38870 * 119.90950 * 180.02562 * 3 2 1 5 5 C 1.37835 * 120.09353 * 179.97438 * 4 3 2 6 6 C 1.39647 * 119.90641 * 0.02562 * 5 4 3 7 7 C 1.47713 * 120.09089 * 179.97438 * 6 5 4 8 8 N 1.31085 * 126.30348 * 359.68758 * 7 6 5 9 9 N 1.28656 * 109.41947 * 179.88938 * 8 7 6 10 10 C 1.31258 * 109.44601 * 0.37911 * 9 8 7 11 11 S 1.76205 * 126.28303 * 179.78916 * 10 9 8 12 12 C 1.81002 * 99.99924 * 359.97438 * 11 10 9 13 13 C 1.50696 * 109.47322 * 179.97438 * 12 11 10 14 14 O 1.21280 * 119.99783 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00394 * 180.02562 * 13 12 11 16 16 C 1.46500 * 119.99604 * 359.97438 * 15 13 12 17 17 C 1.46496 * 120.00437 * 180.02562 * 15 13 12 18 18 C 1.50702 * 109.46919 * 89.99520 * 17 15 13 19 19 H 1.07997 * 120.00287 * 0.02562 * 18 17 15 20 20 C 1.37880 * 119.99885 * 180.02562 * 18 17 15 21 21 N 1.31520 * 120.00084 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00154 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47013 * 89.99543 * 22 20 18 24 24 H 1.48498 * 109.47471 * 210.00151 * 22 20 18 25 25 H 1.48503 * 109.47185 * 330.00446 * 22 20 18 26 26 O 1.34695 * 107.43541 * 359.77099 * 10 9 8 27 27 C 1.39654 * 119.81450 * 359.97438 * 6 5 4 28 28 C 1.37830 * 119.90905 * 359.97438 * 27 6 5 29 29 H 1.09009 * 109.46780 * 299.99397 * 1 2 3 30 30 H 1.08997 * 109.47580 * 59.99361 * 1 2 3 31 31 H 1.08996 * 109.47337 * 179.97438 * 1 2 3 32 32 H 1.08005 * 119.95161 * 0.26439 * 4 3 2 33 33 H 1.07998 * 120.04490 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.47255 * 300.00031 * 12 11 10 35 35 H 1.09010 * 109.46953 * 59.99812 * 12 11 10 36 36 H 1.08994 * 109.47034 * 90.00175 * 16 15 13 37 37 H 1.08999 * 109.47239 * 210.00210 * 16 15 13 38 38 H 1.09003 * 109.47569 * 330.00022 * 16 15 13 39 39 H 1.08994 * 109.47219 * 209.99686 * 17 15 13 40 40 H 1.09005 * 109.46940 * 330.00275 * 17 15 13 41 41 H 0.96995 * 119.99643 * 179.97438 * 21 20 18 42 42 H 1.08004 * 120.04406 * 179.97438 * 27 6 5 43 43 H 1.07998 * 119.95331 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 3.4328 1.2811 -0.0005 5 6 4.0625 2.5072 -0.0011 6 6 3.3038 3.6796 -0.0005 7 6 3.9744 4.9957 -0.0005 8 7 5.2680 5.2076 0.0048 9 7 5.4940 6.4741 0.0005 10 6 4.3523 7.1217 0.0006 11 16 4.1461 8.8717 0.0009 12 6 5.8796 9.3924 0.0019 13 6 5.9521 10.8976 0.0017 14 8 4.9321 11.5537 0.0014 15 7 7.1503 11.5147 0.0018 16 6 8.3823 10.7221 0.0028 17 6 7.2207 12.9780 0.0021 18 6 7.2447 13.4793 1.4231 19 1 7.2113 12.7782 2.2438 20 6 7.3093 14.8333 1.6754 21 7 7.3308 15.2709 2.9155 22 14 7.3663 16.0463 0.2559 23 1 5.9829 16.4342 -0.1196 24 1 8.1249 17.2547 0.6674 25 1 8.0363 15.4140 -0.9089 26 8 3.3672 6.2031 -0.0001 27 6 1.9093 3.6042 0.0000 28 6 1.2875 2.3741 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 4.0188 0.3738 -0.0053 33 1 5.1411 2.5610 -0.0011 34 1 6.3750 9.0046 0.8920 35 1 6.3759 9.0049 -0.8880 36 1 8.6883 10.5250 -1.0246 37 1 9.1692 11.2742 0.5166 38 1 8.2062 9.7773 0.5170 39 1 8.1271 13.2982 -0.5115 40 1 6.3491 13.3838 -0.5116 41 1 7.3766 16.2234 3.0929 42 1 1.3189 4.5086 0.0008 43 1 0.2092 2.3150 -0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004470210.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:07 Heat of formation + Delta-G solvation = -14.099505 kcal Electronic energy + Delta-G solvation = -27767.828012 eV Core-core repulsion = 23520.774322 eV Total energy + Delta-G solvation = -4247.053690 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.20726 -41.19003 -40.79746 -38.63253 -37.40732 -36.78736 -34.75253 -33.55783 -32.35549 -32.05541 -30.56084 -29.62174 -28.29787 -27.38920 -25.70142 -25.07885 -24.36873 -23.46943 -22.62539 -20.70356 -19.69722 -19.23263 -19.16165 -18.63735 -18.18652 -18.13328 -17.44114 -17.09173 -16.86826 -16.78543 -16.71605 -16.02987 -15.57301 -15.32886 -14.81908 -14.79340 -14.56587 -14.51439 -14.18956 -13.98070 -13.75592 -13.74476 -13.68212 -13.62168 -13.26171 -13.19545 -12.91069 -12.83755 -12.60441 -12.47378 -12.43020 -12.03948 -11.91817 -11.77837 -11.74251 -11.56596 -11.01938 -10.82379 -10.21374 -9.60875 -9.50050 -8.83776 -8.33467 -6.39527 -0.73758 -0.71313 0.20520 0.34289 0.58953 1.22341 1.35158 1.38992 1.46035 1.47174 1.51117 2.16569 2.23972 2.31985 2.59926 2.94124 3.01123 3.33650 3.61587 3.70061 3.74774 3.83755 3.87011 4.06320 4.10901 4.15561 4.30752 4.39178 4.41692 4.42048 4.51459 4.65217 4.77182 4.78502 4.89186 4.92128 4.97066 5.02249 5.14399 5.25897 5.43226 5.48902 5.49478 6.19980 6.27125 6.47049 6.62667 6.91587 7.07769 7.26437 8.83331 Molecular weight = 363.11amu Principal moments of inertia in cm(-1) A = 0.033856 B = 0.001506 C = 0.001476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.845169 B =18590.031113 C =18964.896955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.325 6.325 3 C 0.154 3.846 4 C -0.156 4.156 5 C -0.025 4.025 6 C -0.089 4.089 7 C 0.222 3.778 8 N -0.294 5.294 9 N -0.301 5.301 10 C 0.121 3.879 11 S 0.142 5.858 12 C -0.142 4.142 13 C 0.520 3.480 14 O -0.575 6.575 15 N -0.593 5.593 16 C 0.070 3.930 17 C 0.223 3.777 18 C -0.541 4.541 19 H 0.030 0.970 20 C 0.012 3.988 21 N -0.945 5.945 22 Si 0.948 3.052 23 H -0.276 1.276 24 H -0.277 1.277 25 H -0.235 1.235 26 O -0.206 6.206 27 C -0.041 4.041 28 C -0.206 4.206 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.120 0.880 32 H 0.160 0.840 33 H 0.149 0.851 34 H 0.141 0.859 35 H 0.154 0.846 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.058 0.942 40 H 0.026 0.974 41 H 0.268 0.732 42 H 0.144 0.856 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.071 -32.569 -10.179 35.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.237 6.237 3 C 0.106 3.894 4 C -0.174 4.174 5 C -0.045 4.045 6 C -0.091 4.091 7 C 0.010 3.990 8 N -0.140 5.140 9 N -0.153 5.153 10 C -0.196 4.196 11 S 0.371 5.629 12 C -0.293 4.293 13 C 0.306 3.694 14 O -0.456 6.456 15 N -0.324 5.324 16 C -0.072 4.072 17 C 0.101 3.899 18 C -0.579 4.579 19 H 0.048 0.952 20 C -0.186 4.186 21 N -0.585 5.585 22 Si 0.770 3.230 23 H -0.201 1.201 24 H -0.202 1.202 25 H -0.158 1.158 26 O -0.088 6.088 27 C -0.060 4.060 28 C -0.224 4.224 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.138 0.862 32 H 0.177 0.823 33 H 0.167 0.833 34 H 0.159 0.841 35 H 0.172 0.828 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.076 0.924 40 H 0.044 0.956 41 H 0.077 0.923 42 H 0.162 0.838 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -11.135 -31.783 -10.077 35.152 hybrid contribution -0.207 0.703 0.215 0.764 sum -11.342 -31.079 -9.862 34.523 Atomic orbital electron populations 1.23470 0.75881 1.06038 1.02785 1.86096 1.23926 1.26281 1.87429 1.19474 0.92663 0.84894 0.92321 1.20566 0.91773 0.98625 1.06460 1.21065 1.00964 0.89336 0.93133 1.17283 0.93498 0.84657 1.13660 1.25944 0.87725 0.86277 0.99030 1.74362 1.13056 1.07996 1.18624 1.74832 1.22104 0.98435 1.19936 1.30468 0.84353 1.00925 1.03811 1.86978 1.07196 0.78464 1.90256 1.23878 0.98286 0.95722 1.11449 1.19874 0.83895 0.88573 0.77012 1.90706 1.35127 1.67573 1.52189 1.47808 1.06319 1.07829 1.70416 1.22110 0.85535 0.95956 1.03590 1.19454 0.97850 0.77048 0.95532 1.21562 1.51260 0.92693 0.92407 0.95158 1.25849 0.93787 1.00369 0.98592 1.70052 1.51675 1.15379 1.21372 0.85720 0.78939 0.78420 0.79908 1.20141 1.20227 1.15763 1.84997 1.37456 1.15160 1.71189 1.21218 0.91995 0.99240 0.93589 1.21410 1.01950 0.90665 1.08408 0.91214 0.91144 0.86163 0.82282 0.83312 0.84107 0.82777 0.89502 0.90860 0.89362 0.92440 0.95608 0.92262 0.83842 0.81793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.81 113.37 1.11 1.15 16 2 O -0.32 -3.45 10.49 -92.10 -0.97 -4.42 16 3 C 0.15 1.86 6.69 22.58 0.15 2.01 16 4 C -0.16 -1.95 9.97 22.33 0.22 -1.73 16 5 C -0.03 -0.39 9.69 22.51 0.22 -0.18 16 6 C -0.09 -1.65 5.87 -20.09 -0.12 -1.77 16 7 C 0.22 5.52 7.98 87.31 0.70 6.22 16 8 N -0.29 -8.32 11.89 -166.16 -1.98 -10.30 16 9 N -0.30 -8.84 11.62 -171.88 -2.00 -10.84 16 10 C 0.12 3.40 8.53 130.33 1.11 4.51 16 11 S 0.14 4.06 21.45 -56.49 -1.21 2.84 16 12 C -0.14 -3.91 4.26 71.23 0.30 -3.61 16 13 C 0.52 19.82 7.69 87.66 0.67 20.50 16 14 O -0.57 -27.04 15.44 -3.03 -0.05 -27.09 16 15 N -0.59 -22.69 2.86 -851.16 -2.43 -25.13 16 16 C 0.07 1.86 10.24 127.77 1.31 3.17 16 17 C 0.22 10.39 4.23 85.63 0.36 10.75 16 18 C -0.54 -31.09 9.94 25.60 0.25 -30.84 16 19 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 20 C 0.01 0.71 5.47 84.65 0.46 1.17 16 21 N -0.94 -59.20 13.96 21.45 0.30 -58.90 16 22 Si 0.95 43.40 27.47 68.60 1.88 45.28 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 24 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 25 H -0.23 -9.50 6.54 99.48 0.65 -8.85 16 26 O -0.21 -5.48 10.69 -14.90 -0.16 -5.64 16 27 C -0.04 -0.58 9.72 22.52 0.22 -0.36 16 28 C -0.21 -2.18 9.02 22.33 0.20 -1.98 16 29 H 0.07 0.10 7.65 -2.38 -0.02 0.08 16 30 H 0.07 0.09 7.65 -2.39 -0.02 0.07 16 31 H 0.12 -0.03 8.14 -2.39 -0.02 -0.05 16 32 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 33 H 0.15 2.19 7.86 -2.91 -0.02 2.17 16 34 H 0.14 3.52 7.40 -2.40 -0.02 3.51 16 35 H 0.15 3.34 8.11 -2.39 -0.02 3.32 16 36 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.07 2.09 8.07 -2.39 -0.02 2.07 16 38 H 0.09 1.92 6.44 -2.39 -0.02 1.90 16 39 H 0.06 2.42 7.13 -2.39 -0.02 2.40 16 40 H 0.03 1.28 6.85 -2.38 -0.02 1.26 16 41 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 42 H 0.14 1.80 7.93 -2.91 -0.02 1.78 16 43 H 0.16 0.80 6.28 -2.91 -0.02 0.78 16 Total: -1.00 -79.97 387.79 1.58 -78.39 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: 1.00 Total: 6.77 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 7.18 Total: 9.02 kcal Atomic # 7 Polarization: -99.06 SS G_CDS: -6.10 Total: -105.16 kcal Atomic # 8 Polarization: -35.98 SS G_CDS: -1.17 Total: -37.15 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.88 Total: 45.28 kcal Atomic # 16 Polarization: 4.06 SS G_CDS: -1.21 Total: 2.84 kcal Total: -79.97 1.58 -78.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004470210.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.291 kcal (2) G-P(sol) polarization free energy of solvation -79.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds