Wall clock time and date at job start Tue Mar 31 2020 05:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46956 * 110.99920 * 2 1 4 4 C 1.53050 * 109.38588 * 176.82532 * 3 2 1 5 5 N 1.46959 * 109.36366 * 58.38326 * 4 3 2 6 6 C 1.37598 * 110.99802 * 176.81237 * 5 4 3 7 7 N 1.31760 * 125.30219 * 36.23058 * 6 5 4 8 8 C 1.33402 * 109.96862 * 179.97438 * 7 6 5 9 9 C 1.39081 * 107.54845 * 359.97438 * 8 7 6 10 10 C 1.40610 * 119.21954 * 179.97438 * 9 8 7 11 11 O 1.21869 * 120.34305 * 180.02562 * 10 9 8 12 12 N 1.34908 * 119.30469 * 359.97438 * 10 9 8 13 13 C 1.46500 * 119.49855 * 179.97438 * 12 10 9 14 14 C 1.34420 * 120.99717 * 0.02562 * 12 10 9 15 15 O 1.21605 * 119.19055 * 179.97438 * 14 12 10 16 16 N 1.34635 * 121.61984 * 359.97438 * 14 12 10 17 17 C 1.46496 * 119.97306 * 180.02562 * 16 14 12 18 18 N 1.35934 * 125.30144 * 215.91239 * 6 5 4 19 19 C 1.46494 * 126.63379 * 0.02562 * 18 6 5 20 20 C 1.50691 * 109.47647 * 92.95852 * 19 18 6 21 21 H 1.08005 * 119.99985 * 0.02562 * 20 19 18 22 22 C 1.37877 * 120.00466 * 179.97438 * 20 19 18 23 23 N 1.31520 * 119.99771 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00332 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47096 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.47201 * 120.00353 * 24 22 20 27 27 H 1.48504 * 109.47313 * 240.00373 * 24 22 20 28 28 C 1.46954 * 110.88230 * 300.68578 * 5 4 3 29 29 C 1.46954 * 111.01624 * 236.18938 * 2 1 3 30 30 H 1.08997 * 109.47453 * 59.99892 * 1 2 3 31 31 H 1.08999 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46925 * 299.99951 * 1 2 3 33 33 H 1.08992 * 109.49258 * 56.84228 * 3 2 1 34 34 H 1.09001 * 109.48639 * 296.80088 * 3 2 1 35 35 H 1.08994 * 109.49232 * 178.35817 * 4 3 2 36 36 H 1.09008 * 109.48582 * 298.39922 * 4 3 2 37 37 H 1.09003 * 109.47094 * 90.00429 * 13 12 10 38 38 H 1.09004 * 109.47083 * 209.99977 * 13 12 10 39 39 H 1.08997 * 109.47365 * 330.00040 * 13 12 10 40 40 H 1.09005 * 109.47316 * 269.99708 * 17 16 14 41 41 H 1.08993 * 109.46980 * 29.99892 * 17 16 14 42 42 H 1.09003 * 109.46779 * 150.00007 * 17 16 14 43 43 H 1.09004 * 109.47200 * 212.96139 * 19 18 6 44 44 H 1.09000 * 109.46690 * 332.95367 * 19 18 6 45 45 H 0.96993 * 119.99756 * 179.97438 * 23 22 20 46 46 H 1.09000 * 109.48708 * 179.28711 * 28 5 4 47 47 H 1.08999 * 109.48884 * 299.35121 * 28 5 4 48 48 H 1.08992 * 109.47528 * 63.19916 * 29 2 1 49 49 H 1.08998 * 109.50667 * 303.14910 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3297 0.0800 5 7 4.0501 0.5664 -1.0601 6 6 5.4261 0.5669 -1.0604 7 7 6.1877 0.5218 0.0138 8 6 7.4742 0.5366 -0.3390 9 6 7.5276 0.5943 -1.7275 10 6 8.7803 0.6215 -2.3657 11 8 8.8509 0.6724 -3.5813 12 7 9.9029 0.5916 -1.6182 13 6 11.2103 0.6192 -2.2787 14 6 9.8401 0.5359 -0.2766 15 8 10.8728 0.5098 0.3649 16 7 8.6618 0.5082 0.3742 17 6 8.6354 0.4480 1.8377 18 7 6.2113 0.6078 -2.1692 19 6 5.7568 0.6592 -3.5609 20 6 5.6705 2.0954 -4.0086 21 1 5.9290 2.8906 -3.3249 22 6 5.2628 2.3945 -5.2913 23 7 4.9485 1.4262 -6.1240 24 14 5.1552 4.1750 -5.8460 25 1 5.5590 5.0666 -4.7292 26 1 6.0622 4.3889 -7.0022 27 1 3.7596 4.4849 -6.2477 28 6 3.5238 -0.8057 -1.0597 29 6 1.9960 -0.7633 -1.1398 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6013 1.9129 0.8602 34 1 1.6934 1.8775 -0.9172 35 1 3.9174 2.3455 0.0507 36 1 3.8257 0.8491 1.0105 37 1 11.5340 1.6529 -2.4006 38 1 11.9364 0.0805 -1.6698 39 1 11.1332 0.1447 -3.2570 40 1 8.6296 -0.5937 2.1585 41 1 9.5182 0.9465 2.2378 42 1 7.7386 0.9465 2.2057 43 1 6.4637 0.1230 -4.1941 44 1 4.7739 0.1944 -3.6394 45 1 4.6613 1.6366 -7.0262 46 1 3.9182 -1.3466 -1.9200 47 1 3.8261 -1.3109 -0.1424 48 1 1.6938 -0.2825 -2.0701 49 1 1.6021 -1.7792 -1.1108 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004540868.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:20 Heat of formation + Delta-G solvation = 54.546620 kcal Electronic energy + Delta-G solvation = -34657.434141 eV Core-core repulsion = 30236.448807 eV Total energy + Delta-G solvation = -4420.985334 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 362.185 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.54793 -40.87196 -39.05780 -38.62841 -36.29732 -35.14061 -34.91441 -33.85188 -32.14551 -30.96157 -30.29319 -28.65090 -27.51723 -26.67435 -26.45736 -24.11926 -23.76010 -23.47659 -22.76795 -22.47018 -20.52875 -19.44514 -18.90005 -17.93071 -17.15162 -16.89890 -16.68588 -16.44938 -15.59670 -15.43368 -15.19517 -15.03199 -15.01132 -14.88717 -14.59820 -14.51428 -14.28944 -14.15502 -13.75242 -13.21905 -12.98552 -12.69895 -12.58495 -12.45655 -12.28271 -12.22637 -12.17297 -11.88103 -11.85018 -11.28934 -11.23101 -11.04038 -10.99832 -10.98609 -10.80146 -10.53351 -10.36123 -10.10964 -9.78877 -9.67390 -9.50998 -8.99252 -8.70424 -8.62598 -8.39062 -7.52232 -6.26265 -4.31273 1.40672 2.00551 2.26444 2.74525 2.89783 3.20307 3.27758 3.29012 3.34726 3.81878 3.85675 4.00706 4.28817 4.49585 4.83432 4.84501 4.96013 5.10689 5.14639 5.26584 5.31934 5.36358 5.41454 5.42642 5.47833 5.48946 5.50762 5.51940 5.56520 5.71641 5.73733 5.74911 5.78295 5.81429 5.86947 5.94807 5.97733 6.04725 6.26959 6.63762 6.74921 6.83486 6.92548 6.99335 7.02968 7.24790 7.48112 7.60508 7.73618 7.83335 7.87584 8.00158 8.29183 8.68597 9.33238 10.83099 Molecular weight = 362.19amu Principal moments of inertia in cm(-1) A = 0.007229 B = 0.004808 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3872.606193 B = 5822.589814 C = 8848.564500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.546 5.546 3 C 0.055 3.945 4 C 0.077 3.923 5 N -0.452 5.452 6 C 0.437 3.563 7 N -0.525 5.525 8 C 0.297 3.703 9 C -0.133 4.133 10 C 0.586 3.414 11 O -0.487 6.487 12 N -0.557 5.557 13 C 0.088 3.912 14 C 0.710 3.290 15 O -0.555 6.555 16 N -0.510 5.510 17 C 0.097 3.903 18 N -0.356 5.356 19 C 0.237 3.763 20 C -0.524 4.524 21 H 0.062 0.938 22 C 0.070 3.930 23 N -0.889 5.889 24 Si 0.905 3.095 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.281 1.281 28 C 0.066 3.934 29 C 0.058 3.942 30 H 0.027 0.973 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.049 0.951 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.267 0.733 46 H 0.084 0.916 47 H 0.056 0.944 48 H 0.051 0.949 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.399 -4.097 13.322 14.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.271 5.271 3 C -0.073 4.073 4 C -0.050 4.050 5 N -0.176 5.176 6 C 0.084 3.916 7 N -0.255 5.255 8 C 0.062 3.938 9 C -0.254 4.254 10 C 0.380 3.620 11 O -0.360 6.360 12 N -0.302 5.302 13 C -0.053 4.053 14 C 0.413 3.587 15 O -0.430 6.430 16 N -0.239 5.239 17 C -0.045 4.045 18 N -0.034 5.034 19 C 0.120 3.880 20 C -0.562 4.562 21 H 0.080 0.920 22 C -0.134 4.134 23 N -0.527 5.527 24 Si 0.732 3.268 25 H -0.197 1.197 26 H -0.206 1.206 27 H -0.207 1.207 28 C -0.061 4.061 29 C -0.071 4.071 30 H 0.046 0.954 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.067 0.933 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.102 0.898 47 H 0.075 0.925 48 H 0.069 0.931 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.191 -4.155 13.343 14.146 hybrid contribution 0.013 1.106 -1.349 1.744 sum -2.177 -3.048 11.995 12.566 Atomic orbital electron populations 1.22328 0.87170 1.01992 1.00742 1.62193 1.07848 1.14095 1.42920 1.22229 0.94121 0.89336 1.01621 1.22078 0.93524 0.98451 0.90948 1.58521 0.99306 1.15130 1.44672 1.20221 0.89030 1.01396 0.80916 1.69799 0.98986 1.27854 1.28839 1.17789 0.86962 1.01901 0.87110 1.18649 0.87420 1.26791 0.92550 1.15424 0.82396 0.77267 0.86889 1.90984 1.86640 1.46241 1.12152 1.45833 1.09854 1.68704 1.05826 1.21829 0.80959 1.03737 0.98777 1.15415 0.83199 0.78497 0.81585 1.90960 1.30639 1.56399 1.64972 1.43655 1.01138 1.70791 1.08300 1.21814 1.04354 1.03085 0.75261 1.45859 1.01975 1.45166 1.10375 1.20074 0.97052 1.00138 0.70756 1.21048 1.46767 0.90268 0.98104 0.92017 1.24835 0.94533 0.98138 0.95860 1.69917 1.44395 1.31773 1.06588 0.86319 0.77757 0.83890 0.78804 1.19671 1.20626 1.20677 1.22261 0.94589 0.87055 1.02185 1.22171 0.93615 0.98781 0.92484 0.95405 0.91436 0.91416 0.89819 0.93319 0.89730 0.91724 0.91062 0.89140 0.88959 0.91563 0.89479 0.89429 0.92198 0.92227 0.92373 0.89796 0.92526 0.93061 0.89793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.60 60.06 0.58 0.81 16 2 N -0.55 -6.31 4.97 -242.77 -1.21 -7.51 16 3 C 0.06 0.66 5.62 -3.77 -0.02 0.64 16 4 C 0.08 1.09 5.24 -3.77 -0.02 1.07 16 5 N -0.45 -7.60 4.54 -174.69 -0.79 -8.39 16 6 C 0.44 8.36 6.55 -320.32 -2.10 6.26 16 7 N -0.53 -9.50 10.45 -12.75 -0.13 -9.63 16 8 C 0.30 5.50 7.63 -154.61 -1.18 4.33 16 9 C -0.13 -2.82 6.91 -83.48 -0.58 -3.40 16 10 C 0.59 12.22 7.42 -15.31 -0.11 12.10 16 11 O -0.49 -11.58 15.65 5.04 0.08 -11.51 16 12 N -0.56 -9.73 2.96 -131.80 -0.39 -10.12 16 13 C 0.09 1.22 10.09 59.85 0.60 1.82 16 14 C 0.71 12.10 8.12 -87.36 -0.71 11.39 16 15 O -0.55 -9.62 15.27 5.27 0.08 -9.54 16 16 N -0.51 -8.29 3.06 -128.30 -0.39 -8.69 16 17 C 0.10 1.17 10.39 59.84 0.62 1.79 16 18 N -0.36 -7.80 2.82 -116.17 -0.33 -8.12 16 19 C 0.24 5.91 5.60 -5.20 -0.03 5.88 16 20 C -0.52 -14.28 9.39 -34.44 -0.32 -14.60 16 21 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 22 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 23 N -0.89 -25.04 13.29 55.43 0.74 -24.30 16 24 Si 0.91 21.36 29.54 -169.99 -5.02 16.34 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 C 0.07 0.95 5.54 -3.77 -0.02 0.93 16 29 C 0.06 0.71 5.62 -3.77 -0.02 0.68 16 30 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.55 8.13 -51.93 -0.42 0.12 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 1.24 8.13 -51.93 -0.42 0.82 16 36 H 0.06 0.91 7.92 -51.92 -0.41 0.49 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.09 1.09 7.34 -51.93 -0.38 0.71 16 39 H 0.09 1.25 7.40 -51.93 -0.38 0.87 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.09 0.98 7.38 -51.93 -0.38 0.60 16 42 H 0.09 0.99 8.00 -51.93 -0.42 0.58 16 43 H 0.06 1.64 7.42 -51.93 -0.39 1.26 16 44 H 0.06 1.49 8.04 -51.93 -0.42 1.08 16 45 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 46 H 0.08 1.25 8.13 -51.93 -0.42 0.83 16 47 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.08 0.86 8.13 -51.93 -0.42 0.43 16 LS Contribution 400.30 15.07 6.03 6.03 Total: -1.00 -32.17 400.30 -12.13 -44.30 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -7.39 Total: -0.38 kcal Atomic # 6 Polarization: 34.94 SS G_CDS: -3.41 Total: 31.53 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: -2.50 Total: -76.77 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: 0.16 Total: -21.05 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.17 -12.13 -44.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004540868.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.847 kcal (2) G-P(sol) polarization free energy of solvation -32.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds