Wall clock time and date at job start Tue Mar 31 2020 06:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.40701 * 120.55715 * 174.97916 * 3 2 1 5 5 S 1.76195 * 119.70429 * 0.02562 * 4 3 2 6 6 C 1.76200 * 100.00192 * 180.02562 * 5 4 3 7 7 H 1.08000 * 119.99842 * 0.02562 * 6 5 4 8 8 C 1.38793 * 120.00144 * 179.97438 * 6 5 4 9 9 N 1.31557 * 120.00253 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00259 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.46853 * 89.99971 * 10 8 6 12 12 H 1.48490 * 109.47730 * 209.99991 * 10 8 6 13 13 H 1.48506 * 109.47048 * 330.00575 * 10 8 6 14 14 N 1.32273 * 120.59481 * 180.02562 * 4 3 2 15 15 C 1.32980 * 121.92266 * 359.97438 * 14 4 3 16 16 C 1.47472 * 119.45698 * 179.97438 * 15 14 4 17 17 C 1.35029 * 125.27841 * 359.97438 * 16 15 14 18 18 C 1.37725 * 114.70946 * 179.97438 * 17 16 15 19 19 C 1.33798 * 115.08480 * 0.02562 * 18 17 16 20 20 S 1.75859 * 109.75658 * 359.97438 * 19 18 17 21 21 C 1.39628 * 121.08377 * 0.25383 * 15 14 4 22 22 C 1.39171 * 119.27042 * 359.51683 * 21 15 14 23 23 C 1.48190 * 120.87545 * 180.20168 * 22 21 15 24 24 C 1.39436 * 120.12723 * 130.00168 * 23 22 21 25 25 C 1.38001 * 119.86524 * 179.77226 * 24 23 22 26 26 C 1.38343 * 120.12823 * 0.50098 * 25 24 23 27 27 C 1.38334 * 120.26527 * 359.75039 * 26 25 24 28 28 C 1.38001 * 120.13047 * 359.97438 * 27 26 25 29 29 H 0.96995 * 120.00643 * 180.02562 * 9 8 6 30 30 H 1.08004 * 122.64819 * 0.02562 * 17 16 15 31 31 H 1.08000 * 122.45753 * 180.02562 * 18 17 16 32 32 H 1.08002 * 125.11815 * 180.26233 * 19 18 17 33 33 H 1.08002 * 120.36747 * 179.72278 * 21 15 14 34 34 H 1.07997 * 120.07153 * 359.97438 * 24 23 22 35 35 H 1.07997 * 119.93778 * 180.27843 * 25 24 23 36 36 H 1.07997 * 119.86194 * 179.72732 * 26 25 24 37 37 H 1.08001 * 119.93666 * 179.97438 * 27 26 25 38 38 H 1.07997 * 120.06663 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2828 1.2079 -0.1060 5 16 2.4081 2.7316 -0.2392 6 6 3.7625 3.8543 -0.3389 7 1 4.7758 3.4821 -0.3073 8 6 3.5271 5.2168 -0.4589 9 7 4.5383 6.0550 -0.5338 10 14 1.7744 5.8605 -0.5156 11 1 1.3101 6.1539 0.8641 12 1 1.7293 7.1028 -1.3278 13 1 0.8905 4.8363 -1.1280 14 7 4.6055 1.2093 -0.1066 15 6 5.3099 0.0858 -0.0079 16 6 6.7832 0.1505 -0.0147 17 6 7.5137 1.2816 -0.1156 18 6 8.8774 1.0897 -0.0990 19 6 9.2696 -0.1845 0.0138 20 16 7.8614 -1.2338 0.1078 21 6 4.6775 -1.1547 0.0963 22 6 3.2870 -1.2109 0.1066 23 6 2.5791 -2.5078 0.2202 24 6 1.5674 -2.6725 1.1655 25 6 0.9086 -3.8811 1.2634 26 6 1.2571 -4.9313 0.4330 27 6 2.2636 -4.7755 -0.5031 28 6 2.9257 -3.5698 -0.6142 29 1 4.3739 7.0073 -0.6174 30 1 7.0640 2.2599 -0.2017 31 1 9.5787 1.9078 -0.1716 32 1 10.2963 -0.5179 0.0471 33 1 5.2610 -2.0605 0.1714 34 1 1.2977 -1.8549 1.8175 35 1 0.1217 -4.0086 1.9921 36 1 0.7417 -5.8767 0.5164 37 1 2.5317 -5.5990 -1.1484 38 1 3.7110 -3.4492 -1.3457 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004661239.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:18 Heat of formation + Delta-G solvation = 119.437534 kcal Electronic energy + Delta-G solvation = -25441.623529 eV Core-core repulsion = 21852.703568 eV Total energy + Delta-G solvation = -3588.919961 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 364.040 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.18454 -38.80517 -37.44856 -36.12961 -33.56020 -32.78778 -32.10741 -31.03998 -29.76884 -28.62799 -26.04791 -24.97643 -24.11161 -23.21003 -22.42966 -21.40576 -18.99650 -18.85191 -18.42933 -17.49548 -16.67297 -16.37305 -15.80195 -15.38014 -15.15345 -14.99091 -14.81186 -14.22187 -14.01552 -13.54581 -13.46748 -13.23280 -13.15888 -12.95629 -12.84550 -12.46771 -12.42120 -12.40478 -12.21268 -11.94212 -11.68920 -11.41438 -11.34328 -11.23460 -11.09712 -10.76997 -10.26904 -10.08447 -9.81952 -9.26682 -9.17469 -9.07062 -9.02659 -8.65527 -8.40186 -8.15937 -7.28507 -6.58439 -4.34164 0.30579 0.86127 1.28802 1.44097 1.59369 1.70081 2.00407 2.41288 2.85570 3.03808 3.06916 3.16704 3.20772 3.46942 3.65376 3.97578 4.16287 4.18997 4.22885 4.33735 4.72925 4.82328 4.83758 4.84497 4.99127 5.10675 5.26176 5.30358 5.34843 5.41506 5.53398 5.62618 5.69964 5.77937 5.89442 6.00992 6.13581 6.25179 6.35307 6.37215 6.43259 6.47929 6.64621 6.71873 6.83572 7.67174 7.86082 8.20571 8.52051 8.81255 10.48860 Molecular weight = 364.04amu Principal moments of inertia in cm(-1) A = 0.006767 B = 0.004540 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4136.499345 B = 6166.157755 C =10123.727163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C 0.273 3.727 3 C -0.108 4.108 4 C 0.177 3.823 5 S 0.054 5.946 6 C -0.526 4.526 7 H 0.130 0.870 8 C 0.102 3.898 9 N -0.852 5.852 10 Si 0.839 3.161 11 H -0.261 1.261 12 H -0.263 1.263 13 H -0.239 1.239 14 N -0.457 5.457 15 C 0.251 3.749 16 C -0.150 4.150 17 C -0.082 4.082 18 C -0.134 4.134 19 C -0.212 4.212 20 S 0.116 5.884 21 C -0.206 4.206 22 C 0.071 3.929 23 C -0.053 4.053 24 C -0.095 4.095 25 C -0.118 4.118 26 C -0.115 4.115 27 C -0.122 4.122 28 C -0.096 4.096 29 H 0.277 0.723 30 H 0.160 0.840 31 H 0.143 0.857 32 H 0.165 0.835 33 H 0.134 0.866 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.578 -18.540 1.535 19.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.102 5.102 2 C -0.042 4.042 3 C -0.125 4.125 4 C -0.075 4.075 5 S 0.310 5.690 6 C -0.673 4.673 7 H 0.147 0.853 8 C -0.110 4.110 9 N -0.485 5.485 10 Si 0.662 3.338 11 H -0.185 1.185 12 H -0.188 1.188 13 H -0.163 1.163 14 N -0.170 5.170 15 C 0.105 3.895 16 C -0.267 4.267 17 C -0.114 4.114 18 C -0.165 4.165 19 C -0.349 4.349 20 S 0.380 5.620 21 C -0.233 4.233 22 C 0.060 3.940 23 C -0.054 4.054 24 C -0.113 4.113 25 C -0.136 4.136 26 C -0.133 4.133 27 C -0.140 4.140 28 C -0.114 4.114 29 H 0.087 0.913 30 H 0.177 0.823 31 H 0.161 0.839 32 H 0.182 0.818 33 H 0.152 0.848 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.808 -18.482 1.530 18.633 hybrid contribution 1.001 1.151 -0.077 1.527 sum 2.808 -17.331 1.452 17.617 Atomic orbital electron populations 1.81126 1.11594 1.07505 1.09992 1.25088 0.92116 0.93443 0.93541 1.16461 0.85273 0.93347 1.17449 1.23486 0.92028 0.97339 0.94667 1.83362 1.12622 0.93841 1.79224 1.22850 0.94973 0.92155 1.57337 0.85258 1.24789 0.97472 0.95721 0.93017 1.69854 1.30739 1.03635 1.44250 0.87063 0.84881 0.81470 0.80340 1.18532 1.18773 1.16295 1.68224 1.05595 1.27703 1.15481 1.18902 0.90287 0.88767 0.91585 1.22560 0.94411 0.96530 1.13244 1.20715 0.92654 1.00242 0.97821 1.20200 0.95979 0.96913 1.03370 1.25832 1.02016 0.96821 1.10198 1.83911 0.96106 1.09514 1.72469 1.21556 0.92994 0.97931 1.10828 1.18635 0.92337 0.90270 0.92755 1.18702 0.96809 0.92319 0.97529 1.21280 0.94589 0.97777 0.97656 1.21079 0.99788 0.93064 0.99690 1.21234 0.97456 0.98834 0.95790 1.21079 0.96686 0.97317 0.98869 1.21243 0.99592 0.92103 0.98457 0.91274 0.82296 0.83893 0.81784 0.84775 0.85908 0.85802 0.86008 0.85696 0.85350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -8.24 18.54 41.84 0.78 -7.47 16 2 C 0.27 5.11 11.83 -22.47 -0.27 4.85 16 3 C -0.11 -1.98 5.80 -105.88 -0.61 -2.60 16 4 C 0.18 3.71 7.00 -16.43 -0.12 3.60 16 5 S 0.05 1.25 18.60 -107.50 -2.00 -0.75 16 6 C -0.53 -13.99 9.80 30.94 0.30 -13.69 16 7 H 0.13 3.66 6.77 -52.49 -0.36 3.30 16 8 C 0.10 2.72 5.50 -17.46 -0.10 2.62 16 9 N -0.85 -23.59 13.96 55.49 0.77 -22.82 16 10 Si 0.84 19.39 27.74 -169.99 -4.71 14.67 16 11 H -0.26 -5.96 7.11 56.52 0.40 -5.56 16 12 H -0.26 -5.89 7.11 56.52 0.40 -5.49 16 13 H -0.24 -5.41 6.74 56.52 0.38 -5.03 16 14 N -0.46 -9.50 7.97 -8.39 -0.07 -9.57 16 15 C 0.25 4.37 6.74 -83.09 -0.56 3.81 16 16 C -0.15 -2.32 6.37 -36.96 -0.24 -2.56 16 17 C -0.08 -1.29 9.82 -40.91 -0.40 -1.70 16 18 C -0.13 -1.68 10.16 -41.33 -0.42 -2.10 16 19 C -0.21 -2.28 11.23 29.17 0.33 -1.95 16 20 S 0.12 1.34 22.18 -107.50 -2.38 -1.04 16 21 C -0.21 -3.07 9.12 -38.72 -0.35 -3.43 16 22 C 0.07 1.11 5.52 -104.30 -0.58 0.53 16 23 C -0.05 -0.72 5.15 -104.92 -0.54 -1.26 16 24 C -0.09 -1.25 8.52 -39.22 -0.33 -1.58 16 25 C -0.12 -1.30 10.03 -39.63 -0.40 -1.70 16 26 C -0.12 -1.11 10.04 -39.51 -0.40 -1.51 16 27 C -0.12 -1.18 10.03 -39.63 -0.40 -1.58 16 28 C -0.10 -1.09 9.55 -39.22 -0.37 -1.46 16 29 H 0.28 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.16 2.88 7.96 -52.48 -0.42 2.46 16 31 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 32 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.13 1.64 7.22 -52.49 -0.38 1.26 16 34 H 0.12 1.68 7.36 -52.49 -0.39 1.30 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 37 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.13 1.27 8.05 -52.49 -0.42 0.85 16 LS Contribution 368.11 15.07 5.55 5.55 Total: -1.00 -29.00 368.11 -10.75 -39.75 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -3.23 Total: 3.38 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -5.45 Total: -21.71 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 1.48 Total: -39.85 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.71 Total: 14.67 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -4.38 Total: -1.79 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.00 -10.75 -39.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004661239.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.185 kcal (2) G-P(sol) polarization free energy of solvation -29.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds