Wall clock time and date at job start Tue Mar 31 2020 06:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.40701 * 120.55715 * 174.97916 * 3 2 1 5 5 S 1.76195 * 119.70429 * 0.02562 * 4 3 2 6 6 C 1.76200 * 100.00192 * 180.02562 * 5 4 3 7 7 H 1.08000 * 119.99842 * 0.02562 * 6 5 4 8 8 C 1.38793 * 120.00144 * 179.97438 * 6 5 4 9 9 N 1.31557 * 120.00253 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00259 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.46853 * 89.99971 * 10 8 6 12 12 H 1.48490 * 109.47730 * 209.99991 * 10 8 6 13 13 H 1.48506 * 109.47048 * 330.00575 * 10 8 6 14 14 N 1.32273 * 120.59481 * 180.02562 * 4 3 2 15 15 C 1.32980 * 121.92266 * 359.97438 * 14 4 3 16 16 C 1.47472 * 119.45698 * 179.97438 * 15 14 4 17 17 C 1.35029 * 125.27841 * 359.97438 * 16 15 14 18 18 C 1.37725 * 114.70946 * 179.97438 * 17 16 15 19 19 C 1.33798 * 115.08480 * 0.02562 * 18 17 16 20 20 S 1.75859 * 109.75658 * 359.97438 * 19 18 17 21 21 C 1.39628 * 121.08377 * 0.25383 * 15 14 4 22 22 C 1.39171 * 119.27042 * 359.51683 * 21 15 14 23 23 C 1.48190 * 120.87545 * 180.20168 * 22 21 15 24 24 C 1.39436 * 120.12723 * 130.00168 * 23 22 21 25 25 C 1.38001 * 119.86524 * 179.77226 * 24 23 22 26 26 C 1.38343 * 120.12823 * 0.50098 * 25 24 23 27 27 C 1.38334 * 120.26527 * 359.75039 * 26 25 24 28 28 C 1.38001 * 120.13047 * 359.97438 * 27 26 25 29 29 H 0.96995 * 120.00643 * 180.02562 * 9 8 6 30 30 H 1.08004 * 122.64819 * 0.02562 * 17 16 15 31 31 H 1.08000 * 122.45753 * 180.02562 * 18 17 16 32 32 H 1.08002 * 125.11815 * 180.26233 * 19 18 17 33 33 H 1.08002 * 120.36747 * 179.72278 * 21 15 14 34 34 H 1.07997 * 120.07153 * 359.97438 * 24 23 22 35 35 H 1.07997 * 119.93778 * 180.27843 * 25 24 23 36 36 H 1.07997 * 119.86194 * 179.72732 * 26 25 24 37 37 H 1.08001 * 119.93666 * 179.97438 * 27 26 25 38 38 H 1.07997 * 120.06663 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2828 1.2079 -0.1060 5 16 2.4081 2.7316 -0.2392 6 6 3.7625 3.8543 -0.3389 7 1 4.7758 3.4821 -0.3073 8 6 3.5271 5.2168 -0.4589 9 7 4.5383 6.0550 -0.5338 10 14 1.7744 5.8605 -0.5156 11 1 1.3101 6.1539 0.8641 12 1 1.7293 7.1028 -1.3278 13 1 0.8905 4.8363 -1.1280 14 7 4.6055 1.2093 -0.1066 15 6 5.3099 0.0858 -0.0079 16 6 6.7832 0.1505 -0.0147 17 6 7.5137 1.2816 -0.1156 18 6 8.8774 1.0897 -0.0990 19 6 9.2696 -0.1845 0.0138 20 16 7.8614 -1.2338 0.1078 21 6 4.6775 -1.1547 0.0963 22 6 3.2870 -1.2109 0.1066 23 6 2.5791 -2.5078 0.2202 24 6 1.5674 -2.6725 1.1655 25 6 0.9086 -3.8811 1.2634 26 6 1.2571 -4.9313 0.4330 27 6 2.2636 -4.7755 -0.5031 28 6 2.9257 -3.5698 -0.6142 29 1 4.3739 7.0073 -0.6174 30 1 7.0640 2.2599 -0.2017 31 1 9.5787 1.9078 -0.1716 32 1 10.2963 -0.5179 0.0471 33 1 5.2610 -2.0605 0.1714 34 1 1.2977 -1.8549 1.8175 35 1 0.1217 -4.0086 1.9921 36 1 0.7417 -5.8767 0.5164 37 1 2.5317 -5.5990 -1.1484 38 1 3.7110 -3.4492 -1.3457 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004661239.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:18 Heat of formation + Delta-G solvation = 105.733551 kcal Electronic energy + Delta-G solvation = -25442.217778 eV Core-core repulsion = 21852.703568 eV Total energy + Delta-G solvation = -3589.514211 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 364.040 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.51896 -39.81871 -38.57246 -37.62855 -34.88017 -34.71289 -33.48435 -31.88819 -30.87853 -29.81845 -28.02541 -26.21407 -25.47229 -24.31687 -23.33414 -22.47428 -20.47489 -20.10730 -19.86943 -18.93753 -17.78997 -17.56515 -17.28721 -16.93534 -16.37519 -16.08415 -16.02786 -15.50796 -15.29621 -15.03289 -14.64602 -14.57263 -14.32582 -14.14918 -14.05961 -13.81839 -13.77315 -13.67321 -13.50652 -13.34312 -13.17014 -13.05916 -12.94068 -12.25087 -12.09552 -12.05363 -11.80995 -11.57827 -11.17277 -11.09756 -11.01388 -10.53960 -9.90172 -9.65986 -9.48223 -9.36793 -8.96786 -8.58675 -6.37930 -1.00237 -0.26820 0.16687 0.44780 0.50710 0.58628 0.74278 0.98939 1.22300 1.31467 1.39818 1.50005 1.65852 2.04686 2.09192 2.32709 2.65891 2.72421 2.80051 2.87270 3.14726 3.37219 3.85566 3.94752 4.02434 4.08051 4.14479 4.24467 4.29442 4.35235 4.53288 4.55757 4.63170 4.73995 4.84734 4.97855 5.10169 5.16931 5.20656 5.43266 5.50003 5.51753 5.55164 5.56166 5.69671 6.01581 6.32958 6.37340 6.74445 6.80715 8.53069 Molecular weight = 364.04amu Principal moments of inertia in cm(-1) A = 0.006767 B = 0.004540 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4136.499345 B = 6166.157755 C =10123.727163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C 0.281 3.719 3 C -0.109 4.109 4 C 0.173 3.827 5 S 0.013 5.987 6 C -0.536 4.536 7 H 0.096 0.904 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.894 3.106 11 H -0.256 1.256 12 H -0.250 1.250 13 H -0.235 1.235 14 N -0.495 5.495 15 C 0.240 3.760 16 C -0.194 4.194 17 C -0.095 4.095 18 C -0.156 4.156 19 C -0.184 4.184 20 S 0.187 5.813 21 C -0.178 4.178 22 C 0.082 3.918 23 C -0.079 4.079 24 C -0.113 4.113 25 C -0.126 4.126 26 C -0.106 4.106 27 C -0.117 4.117 28 C -0.097 4.097 29 H 0.281 0.719 30 H 0.115 0.885 31 H 0.158 0.842 32 H 0.207 0.793 33 H 0.173 0.827 34 H 0.105 0.895 35 H 0.140 0.860 36 H 0.154 0.846 37 H 0.159 0.841 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.346 -23.826 1.434 24.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.112 5.112 2 C -0.034 4.034 3 C -0.125 4.125 4 C -0.079 4.079 5 S 0.265 5.735 6 C -0.684 4.684 7 H 0.113 0.887 8 C -0.152 4.152 9 N -0.534 5.534 10 Si 0.715 3.285 11 H -0.181 1.181 12 H -0.174 1.174 13 H -0.159 1.159 14 N -0.208 5.208 15 C 0.096 3.904 16 C -0.311 4.311 17 C -0.129 4.129 18 C -0.186 4.186 19 C -0.321 4.321 20 S 0.451 5.549 21 C -0.203 4.203 22 C 0.072 3.928 23 C -0.080 4.080 24 C -0.131 4.131 25 C -0.143 4.143 26 C -0.124 4.124 27 C -0.134 4.134 28 C -0.115 4.115 29 H 0.091 0.909 30 H 0.134 0.866 31 H 0.176 0.824 32 H 0.224 0.776 33 H 0.190 0.810 34 H 0.124 0.876 35 H 0.158 0.842 36 H 0.172 0.828 37 H 0.177 0.823 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.616 -23.858 1.437 24.044 hybrid contribution 0.971 2.275 0.010 2.473 sum 3.588 -21.583 1.447 21.927 Atomic orbital electron populations 1.81106 1.11838 1.07974 1.10293 1.25092 0.92117 0.93007 0.93166 1.16595 0.85242 0.93569 1.17123 1.23297 0.92535 0.96735 0.95367 1.83025 1.12150 0.95064 1.83270 1.22730 0.94710 0.93187 1.57760 0.88651 1.25533 1.01134 0.95810 0.92683 1.69946 1.32725 1.04054 1.46677 0.86223 0.80450 0.81202 0.80651 1.18064 1.17395 1.15856 1.68147 1.05785 1.30104 1.16784 1.19391 0.91518 0.88685 0.90786 1.22734 0.94017 0.99030 1.15304 1.20634 0.94600 0.98843 0.98821 1.20236 0.94492 0.98691 1.05165 1.26381 1.03842 0.95698 1.06161 1.83553 0.94230 1.06384 1.70689 1.21953 0.92953 0.98157 1.07280 1.18937 0.92588 0.90521 0.90773 1.18650 0.98034 0.91761 0.99524 1.21282 0.95328 0.98507 0.98007 1.21342 0.99931 0.92609 1.00463 1.21672 0.96828 0.99478 0.94392 1.21494 0.95760 0.97416 0.98763 1.21484 1.00059 0.91939 0.97987 0.90947 0.86650 0.82449 0.77571 0.81019 0.87638 0.84216 0.82806 0.82341 0.83784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -17.05 18.54 19.00 0.35 -16.70 16 2 C 0.28 10.73 11.83 88.33 1.04 11.78 16 3 C -0.11 -4.10 5.80 -20.68 -0.12 -4.22 16 4 C 0.17 7.71 7.00 85.23 0.60 8.30 16 5 S 0.01 0.66 18.60 -56.49 -1.05 -0.39 16 6 C -0.54 -30.95 9.80 67.95 0.67 -30.28 16 7 H 0.10 6.00 6.77 -2.91 -0.02 5.98 16 8 C 0.06 3.17 5.50 84.87 0.47 3.64 16 9 N -0.90 -53.20 13.96 21.64 0.30 -52.90 16 10 Si 0.89 42.01 27.74 68.60 1.90 43.91 16 11 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 12 H -0.25 -11.05 7.11 99.48 0.71 -10.34 16 13 H -0.23 -10.76 6.74 99.48 0.67 -10.09 16 14 N -0.49 -22.03 7.97 -180.47 -1.44 -23.46 16 15 C 0.24 8.52 6.74 41.74 0.28 8.80 16 16 C -0.19 -6.00 6.37 23.97 0.15 -5.84 16 17 C -0.10 -3.17 9.82 21.41 0.21 -2.96 16 18 C -0.16 -3.80 10.16 21.14 0.21 -3.58 16 19 C -0.18 -3.29 11.23 66.81 0.75 -2.54 16 20 S 0.19 3.67 22.18 -56.49 -1.25 2.41 16 21 C -0.18 -5.05 9.12 22.83 0.21 -4.84 16 22 C 0.08 2.51 5.52 -19.66 -0.11 2.40 16 23 C -0.08 -1.99 5.15 -20.06 -0.10 -2.09 16 24 C -0.11 -2.81 8.52 22.50 0.19 -2.62 16 25 C -0.13 -2.40 10.03 22.24 0.22 -2.18 16 26 C -0.11 -1.56 10.04 22.32 0.22 -1.33 16 27 C -0.12 -1.69 10.03 22.24 0.22 -1.46 16 28 C -0.10 -1.83 9.55 22.50 0.21 -1.61 16 29 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 30 H 0.12 4.79 7.96 -2.91 -0.02 4.77 16 31 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 32 H 0.21 1.96 8.06 -2.91 -0.02 1.94 16 33 H 0.17 3.54 7.22 -2.91 -0.02 3.52 16 34 H 0.11 2.91 7.36 -2.91 -0.02 2.89 16 35 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 36 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 37 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 38 H 0.14 2.21 8.05 -2.91 -0.02 2.18 16 Total: -1.00 -70.81 368.11 5.24 -65.57 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 1.09 Total: 12.21 kcal Atomic # 6 Polarization: -35.99 SS G_CDS: 5.34 Total: -30.65 kcal Atomic # 7 Polarization: -92.28 SS G_CDS: -0.78 Total: -93.06 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 1.90 Total: 43.91 kcal Atomic # 16 Polarization: 4.32 SS G_CDS: -2.30 Total: 2.02 kcal Total: -70.81 5.24 -65.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004661239.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.307 kcal (2) G-P(sol) polarization free energy of solvation -70.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds