Wall clock time and date at job start Tue Mar 31 2020 05:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35950 * 117.00275 * 2 1 4 4 C 1.38058 * 119.99413 * 0.02562 * 3 2 1 5 5 C 1.40062 * 119.83110 * 179.97438 * 4 3 2 6 6 C 1.46766 * 120.08338 * 180.02562 * 5 4 3 7 7 C 1.35787 * 119.99816 * 141.78814 * 6 5 4 8 8 S 1.77488 * 127.96904 * 171.98376 * 7 6 5 9 9 C 1.77218 * 94.57393 * 179.97438 * 8 7 6 10 10 O 1.21628 * 126.55843 * 180.02562 * 9 8 7 11 11 N 1.33803 * 106.89082 * 359.97438 * 9 8 7 12 12 C 1.46497 * 120.23982 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47417 * 299.97616 * 12 11 9 14 14 C 1.53003 * 109.47299 * 59.97703 * 12 11 9 15 15 C 1.32263 * 119.51504 * 359.67981 * 11 9 8 16 16 O 1.21703 * 122.51622 * 180.36028 * 15 11 9 17 17 C 1.40117 * 119.82606 * 359.97438 * 5 4 3 18 18 C 1.37633 * 119.99308 * 0.04456 * 17 5 4 19 19 C 1.39080 * 120.16718 * 359.95158 * 18 17 5 20 20 O 1.35607 * 119.91236 * 179.97438 * 19 18 17 21 21 C 1.34757 * 116.99956 * 354.30341 * 20 19 18 22 22 H 1.08000 * 119.99813 * 5.09896 * 21 20 19 23 23 C 1.38687 * 119.99899 * 185.09321 * 21 20 19 24 24 N 1.31527 * 120.00535 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99869 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47131 * 60.00512 * 25 23 21 27 27 H 1.48500 * 109.47008 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47640 * 300.00462 * 25 23 21 29 29 H 1.09002 * 109.46902 * 299.99398 * 1 2 3 30 30 H 1.09001 * 109.47545 * 59.99839 * 1 2 3 31 31 H 1.09007 * 109.47389 * 179.97438 * 1 2 3 32 32 H 1.07999 * 120.08262 * 359.70310 * 4 3 2 33 33 H 1.07998 * 120.00239 * 321.77986 * 6 5 4 34 34 H 1.08997 * 109.47334 * 179.97438 * 12 11 9 35 35 H 1.09004 * 109.47192 * 300.00212 * 13 12 11 36 36 H 1.09005 * 109.47306 * 60.00387 * 13 12 11 37 37 H 1.09003 * 109.47410 * 179.97438 * 13 12 11 38 38 H 1.08999 * 109.47241 * 59.99411 * 14 12 11 39 39 H 1.08994 * 109.47701 * 179.97438 * 14 12 11 40 40 H 1.09005 * 109.47168 * 300.00022 * 14 12 11 41 41 H 1.07991 * 120.00465 * 180.02562 * 17 5 4 42 42 H 1.07993 * 119.91812 * 179.97438 * 18 17 5 43 43 H 0.96999 * 120.00878 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2943 2.3691 0.0005 5 6 1.9337 3.6152 0.0011 6 6 1.1397 4.8496 0.0022 7 6 1.5499 5.9199 0.7302 8 16 0.8741 7.5611 0.7347 9 6 2.0215 8.1832 1.9334 10 8 2.0665 9.3162 2.3734 11 7 2.8283 7.1678 2.2628 12 6 3.8982 7.3640 3.2441 13 6 4.8574 8.4457 2.7435 14 6 3.2918 7.7987 4.5799 15 6 2.6490 5.9842 1.7003 16 8 3.3461 5.0222 1.9643 17 6 3.3334 3.6802 0.0016 18 6 4.0760 2.5214 0.0007 19 6 3.4407 1.2842 0.0002 20 8 4.1775 0.1457 -0.0012 21 6 5.5128 0.2813 -0.1213 22 1 5.9572 1.2657 -0.1279 23 6 6.3164 -0.8431 -0.2363 24 7 5.7752 -2.0419 -0.2287 25 14 8.1674 -0.6551 -0.4035 26 1 8.7033 0.0482 0.7895 27 1 8.7936 -1.9974 -0.5102 28 1 8.4768 0.1332 -1.6234 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 0.2157 2.3141 -0.0039 33 1 0.2294 4.9066 -0.5760 34 1 4.4430 6.4297 3.3794 35 1 5.2895 8.1360 1.7918 36 1 4.3127 9.3801 2.6083 37 1 5.6532 8.5920 3.4738 38 1 2.6083 7.0281 4.9366 39 1 4.0877 7.9442 5.3101 40 1 2.7469 8.7331 4.4446 41 1 3.8294 4.6395 0.0025 42 1 5.1547 2.5730 0.0007 43 1 6.3372 -2.8284 -0.3095 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004704792.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:42 Heat of formation + Delta-G solvation = -57.606598 kcal Electronic energy + Delta-G solvation = -30078.786758 eV Core-core repulsion = 25797.553708 eV Total energy + Delta-G solvation = -4281.233051 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.102 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.80748 -39.78472 -38.88407 -37.73366 -36.70577 -35.96380 -34.10873 -32.90119 -32.23837 -29.71057 -28.76350 -27.51715 -26.70261 -25.73419 -25.16740 -24.68746 -22.05681 -21.71502 -20.63303 -19.70693 -18.73992 -18.25404 -17.65468 -16.85552 -16.67486 -16.27765 -15.75536 -15.58079 -15.25961 -15.16675 -14.81039 -14.56624 -14.35386 -14.22731 -13.99727 -13.69820 -13.64250 -13.42346 -13.34718 -12.91365 -12.54207 -12.37140 -12.14126 -11.85310 -11.71092 -11.66229 -11.57655 -11.48595 -11.32612 -11.06557 -10.88949 -10.81048 -10.58759 -10.44282 -10.16425 -9.99640 -9.76031 -9.63568 -9.05851 -8.31757 -7.94116 -6.93263 -6.69306 -4.17454 0.34148 0.72181 1.48961 1.57992 2.14894 2.36904 2.60615 2.94213 3.02515 3.05536 3.06734 3.78644 3.91680 4.12190 4.36663 4.57473 4.72466 4.77373 4.84393 4.94198 5.04244 5.07719 5.33658 5.34924 5.45922 5.48399 5.49767 5.53328 5.56991 5.69679 5.72903 5.79020 5.82195 5.92425 5.93924 6.16089 6.22963 6.44145 6.65337 6.74747 6.82703 6.90715 7.04782 7.21690 7.44899 7.57433 7.72272 8.05062 8.73503 9.41663 10.45781 Molecular weight = 363.10amu Principal moments of inertia in cm(-1) A = 0.010869 B = 0.002964 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.625342 B = 9443.696085 C =11369.717163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.304 6.304 3 C 0.045 3.955 4 C -0.125 4.125 5 C -0.191 4.191 6 C 0.123 3.877 7 C -0.284 4.284 8 S -0.054 6.054 9 C 0.541 3.459 10 O -0.446 6.446 11 N -0.566 5.566 12 C 0.120 3.880 13 C -0.167 4.167 14 C -0.167 4.167 15 C 0.550 3.450 16 O -0.453 6.453 17 C 0.003 3.997 18 C -0.231 4.231 19 C 0.158 3.842 20 O -0.141 6.141 21 C -0.386 4.386 22 H 0.099 0.901 23 C 0.042 3.958 24 N -0.840 5.840 25 Si 0.946 3.054 26 H -0.266 1.266 27 H -0.275 1.275 28 H -0.266 1.266 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.123 0.877 33 H 0.139 0.861 34 H 0.114 0.886 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.111 0.889 42 H 0.136 0.864 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.440 14.992 2.558 16.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.218 6.218 3 C 0.000 4.000 4 C -0.145 4.145 5 C -0.195 4.195 6 C 0.097 3.903 7 C -0.399 4.399 8 S 0.183 5.817 9 C 0.221 3.779 10 O -0.321 6.321 11 N -0.312 5.312 12 C 0.016 3.984 13 C -0.225 4.225 14 C -0.225 4.225 15 C 0.340 3.660 16 O -0.325 6.325 17 C -0.016 4.016 18 C -0.251 4.251 19 C 0.100 3.900 20 O -0.040 6.040 21 C -0.461 4.461 22 H 0.117 0.883 23 C -0.166 4.166 24 N -0.471 5.471 25 Si 0.769 3.231 26 H -0.191 1.191 27 H -0.200 1.200 28 H -0.191 1.191 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.141 0.859 33 H 0.157 0.843 34 H 0.132 0.868 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.129 0.871 42 H 0.154 0.846 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.875 14.982 2.343 17.087 hybrid contribution 1.532 -0.237 0.643 1.678 sum -6.344 14.744 2.986 16.327 Atomic orbital electron populations 1.22904 0.80258 1.03060 1.00298 1.86236 1.19496 1.26163 1.89878 1.17931 0.89267 0.84527 1.08273 1.20707 0.98347 0.90558 1.04912 1.17874 0.92846 0.90441 1.18361 1.21845 0.93885 0.88680 0.85860 1.23126 1.07014 0.98396 1.11410 1.86018 1.40839 1.05574 1.49236 1.22007 0.84154 0.86699 0.84998 1.90843 1.69061 1.17229 1.54970 1.46499 1.32002 1.11650 1.41025 1.21533 0.87254 1.02011 0.87591 1.22180 0.99123 0.99033 1.02129 1.22182 1.02114 1.02795 0.95395 1.17664 0.84662 0.82020 0.81666 1.91001 1.45564 1.34465 1.61517 1.20809 0.91849 0.97253 0.91669 1.20744 1.00655 0.90561 1.13102 1.18923 0.88247 0.87484 0.95308 1.83965 1.19851 1.26223 1.73979 1.21561 0.78364 0.95244 1.50953 0.88326 1.25448 1.01087 0.94087 0.95941 1.70036 1.36990 0.97909 1.42197 0.85697 0.79499 0.78306 0.79577 1.19105 1.19981 1.19100 0.93540 0.93468 0.89015 0.85884 0.84324 0.86758 0.91991 0.90834 0.90436 0.92085 0.90444 0.90822 0.87111 0.84643 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.81 101.05 0.99 1.42 16 2 O -0.30 -6.27 10.28 -34.20 -0.35 -6.62 16 3 C 0.04 0.94 6.70 -39.13 -0.26 0.67 16 4 C -0.13 -2.12 8.78 -38.96 -0.34 -2.46 16 5 C -0.19 -3.16 5.36 -105.06 -0.56 -3.72 16 6 C 0.12 1.59 9.86 -37.01 -0.37 1.22 16 7 C -0.28 -3.81 6.32 -37.02 -0.23 -4.05 16 8 S -0.05 -0.64 23.18 -107.50 -2.49 -3.13 16 9 C 0.54 7.09 7.66 53.62 0.41 7.50 16 10 O -0.45 -6.27 14.51 5.25 0.08 -6.19 16 11 N -0.57 -7.45 2.43 -113.94 -0.28 -7.73 16 12 C 0.12 1.38 3.18 -67.93 -0.22 1.16 16 13 C -0.17 -1.66 9.14 37.15 0.34 -1.32 16 14 C -0.17 -1.67 9.14 37.16 0.34 -1.33 16 15 C 0.55 8.18 6.96 -13.93 -0.10 8.08 16 16 O -0.45 -7.95 12.24 5.19 0.06 -7.88 16 17 C 0.00 0.06 6.92 -39.10 -0.27 -0.21 16 18 C -0.23 -4.90 9.14 -39.49 -0.36 -5.26 16 19 C 0.16 3.75 6.67 -38.75 -0.26 3.49 16 20 O -0.14 -3.90 9.52 -13.92 -0.13 -4.03 16 21 C -0.39 -10.29 9.48 30.90 0.29 -10.00 16 22 H 0.10 2.40 5.18 -52.49 -0.27 2.13 16 23 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 24 N -0.84 -23.51 13.67 55.48 0.76 -22.75 16 25 Si 0.95 19.38 29.55 -169.99 -5.02 14.35 16 26 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 27 H -0.28 -5.50 7.11 56.52 0.40 -5.09 16 28 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 29 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 30 H 0.05 0.56 7.65 -51.93 -0.40 0.16 16 31 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.12 1.65 6.28 -52.49 -0.33 1.32 16 33 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.11 1.39 7.00 -51.93 -0.36 1.03 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.80 6.45 -51.93 -0.34 0.46 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.80 6.45 -51.93 -0.33 0.46 16 41 H 0.11 1.92 6.23 -52.49 -0.33 1.59 16 42 H 0.14 2.85 5.61 -52.49 -0.29 2.56 16 43 H 0.28 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 372.90 15.07 5.62 5.62 Total: -1.00 -30.92 372.90 -7.17 -38.09 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -4.72 Total: 4.10 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -0.69 Total: -3.82 kcal Atomic # 7 Polarization: -30.96 SS G_CDS: 0.48 Total: -30.48 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.34 Total: -24.73 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.35 kcal Atomic # 16 Polarization: -0.64 SS G_CDS: -2.49 Total: -3.13 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.92 -7.17 -38.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004704792.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.515 kcal (2) G-P(sol) polarization free energy of solvation -30.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds