Wall clock time and date at job start Tue Mar 31 2020 06:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47088 * 174.43230 * 3 2 1 5 5 N 1.46492 * 109.47556 * 180.02562 * 4 3 2 6 6 C 1.46504 * 119.99946 * 270.00216 * 5 4 3 7 7 C 1.50705 * 109.47188 * 269.99721 * 6 5 4 8 8 H 1.08005 * 119.99586 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99851 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00108 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99552 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47099 * 90.00467 * 11 9 7 13 13 H 1.48500 * 109.46987 * 210.00039 * 11 9 7 14 14 H 1.48496 * 109.47374 * 330.00312 * 11 9 7 15 15 C 1.34777 * 120.00173 * 89.99690 * 5 4 3 16 16 O 1.21282 * 119.99961 * 180.02562 * 15 5 4 17 17 C 1.50693 * 120.00117 * 0.02562 * 15 5 4 18 18 C 1.53000 * 109.47228 * 179.97438 * 17 15 5 19 19 S 1.81408 * 109.47011 * 179.97438 * 18 17 15 20 20 O 1.42105 * 108.57542 * 65.51943 * 19 18 17 21 21 O 1.42092 * 108.57879 * 294.49080 * 19 18 17 22 22 C 1.81396 * 101.91803 * 180.02562 * 19 18 17 23 23 C 1.50707 * 109.47003 * 180.02562 * 22 19 18 24 24 C 1.38238 * 119.99792 * 90.00226 * 23 22 19 25 25 C 1.38235 * 119.99712 * 179.97438 * 24 23 22 26 26 C 1.38234 * 120.00220 * 359.97124 * 25 24 23 27 27 C 1.38233 * 120.00037 * 0.28719 * 26 25 24 28 28 C 1.38234 * 120.00179 * 269.98162 * 23 22 19 29 29 H 1.09000 * 109.47346 * 54.43676 * 3 2 1 30 30 H 1.08998 * 109.47489 * 294.43201 * 3 2 1 31 31 H 1.09004 * 109.47104 * 59.99864 * 4 3 2 32 32 H 1.09003 * 109.47368 * 300.00468 * 4 3 2 33 33 H 1.09000 * 109.47404 * 29.99871 * 6 5 4 34 34 H 1.09007 * 109.47255 * 149.99722 * 6 5 4 35 35 H 0.97007 * 119.99403 * 179.97438 * 10 9 7 36 36 H 1.09010 * 109.47205 * 59.99809 * 17 15 5 37 37 H 1.08999 * 109.47254 * 299.99676 * 17 15 5 38 38 H 1.09007 * 109.47071 * 60.00483 * 18 17 15 39 39 H 1.08996 * 109.47462 * 299.99821 * 18 17 15 40 40 H 1.09005 * 109.47589 * 60.00614 * 22 19 18 41 41 H 1.09000 * 109.47576 * 299.99772 * 22 19 18 42 42 H 1.08005 * 120.00068 * 359.97438 * 24 23 22 43 43 H 1.07999 * 119.99770 * 179.97438 * 25 24 23 44 44 H 1.08002 * 119.99744 * 180.02562 * 26 25 24 45 45 H 1.07998 * 120.00395 * 179.72811 * 27 26 25 46 46 H 1.07999 * 119.99968 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1173 1.4366 -0.1400 5 7 4.5822 1.4373 -0.1406 6 6 5.3152 1.5605 1.1219 7 6 5.5658 3.0169 1.4172 8 1 5.2146 3.7749 0.7326 9 6 6.2435 3.3817 2.5612 10 7 6.6715 2.4586 3.3945 11 14 6.5547 5.1869 2.9268 12 1 5.4247 5.7333 3.7203 13 1 7.8150 5.3252 3.7000 14 1 6.6720 5.9373 1.6508 15 6 5.2557 1.3245 -1.3026 16 8 6.4685 1.3246 -1.3030 17 6 4.5018 1.1982 -2.6012 18 6 5.4956 1.0865 -3.7591 19 16 4.5880 0.9337 -5.3224 20 8 3.8772 2.1424 -5.5531 21 8 3.8791 -0.2977 -5.3158 22 6 5.9373 0.8168 -6.5291 23 6 5.3614 0.6820 -7.9152 24 6 5.0970 1.8119 -8.6666 25 6 4.5692 1.6882 -9.9382 26 6 4.3063 0.4349 -10.4587 27 6 4.5656 -0.6947 -9.7052 28 6 5.0978 -0.5713 -8.4353 29 1 2.9716 -0.5969 -0.8360 30 1 2.9715 -0.4242 0.9356 31 1 2.7536 2.0342 0.6960 32 1 2.7537 1.8616 -1.0756 33 1 4.7267 1.1224 1.9280 34 1 6.2679 1.0369 1.0416 35 1 7.1486 2.7154 4.1992 36 1 3.8749 2.0784 -2.7446 37 1 3.8753 0.3067 -2.5725 38 1 6.1228 0.2064 -3.6160 39 1 6.1218 1.9782 -3.7878 40 1 6.5515 -0.0553 -6.3042 41 1 6.5506 1.7164 -6.4768 42 1 5.3029 2.7911 -8.2602 43 1 4.3623 2.5709 -10.5251 44 1 3.8943 0.3384 -11.4523 45 1 4.3561 -1.6737 -10.1101 46 1 5.3050 -1.4540 -7.8486 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004735718.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:26 Heat of formation + Delta-G solvation = -56.605817 kcal Electronic energy + Delta-G solvation = -29453.957259 eV Core-core repulsion = 25243.174789 eV Total energy + Delta-G solvation = -4210.782470 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 364.129 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.62900 -39.46183 -37.14840 -36.88644 -36.19230 -35.36015 -33.46654 -33.38438 -32.64836 -31.28758 -30.88645 -28.07940 -27.56321 -25.12768 -24.03823 -22.99541 -22.50843 -21.79298 -19.09518 -18.70254 -17.74923 -17.32374 -17.25754 -16.58860 -16.49644 -16.36356 -15.86157 -15.61720 -15.52557 -15.26329 -15.06424 -14.71940 -14.30189 -13.91960 -13.81025 -13.70344 -13.38849 -13.17533 -13.06712 -12.94779 -12.66425 -12.45492 -12.35192 -12.24384 -12.21622 -12.14893 -11.78744 -11.76030 -11.52338 -11.41267 -11.33705 -11.31343 -11.03741 -10.89165 -10.77951 -10.64854 -10.24348 -9.77048 -9.30851 -9.21302 -9.06010 -8.52208 -7.94727 -6.13940 -4.18778 -0.37915 0.97289 1.01907 2.50081 2.73420 2.83527 3.14172 3.24681 3.25429 3.32685 3.36446 3.42183 3.62061 3.75037 4.04292 4.18076 4.31808 4.36778 4.38455 4.62692 4.63738 4.74565 4.78066 4.89872 4.97305 5.02583 5.09302 5.10935 5.20688 5.21461 5.30548 5.38631 5.53063 5.56038 5.64959 5.68539 5.80070 6.04660 6.04763 6.08729 6.12859 6.57230 6.84948 7.27174 7.34707 7.59361 7.81786 8.10888 8.14564 8.72634 8.88757 9.46956 10.94155 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.011736 B = 0.002268 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.216225 B =12343.407412 C =13846.580466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.216 3.784 3 C -0.052 4.052 4 C 0.112 3.888 5 N -0.594 5.594 6 C 0.244 3.756 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.062 3.938 10 N -0.893 5.893 11 Si 0.898 3.102 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.516 3.484 16 O -0.530 6.530 17 C -0.139 4.139 18 C -0.591 4.591 19 S 2.409 3.591 20 O -0.930 6.930 21 O -0.932 6.932 22 C -0.570 4.570 23 C -0.090 4.090 24 C -0.103 4.103 25 C -0.119 4.119 26 C -0.113 4.113 27 C -0.120 4.120 28 C -0.103 4.103 29 H 0.108 0.892 30 H 0.119 0.881 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.037 0.963 34 H 0.047 0.953 35 H 0.264 0.736 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.131 0.869 43 H 0.128 0.872 44 H 0.125 0.875 45 H 0.128 0.872 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.217 -6.122 -23.430 24.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.102 4.102 3 C -0.094 4.094 4 C -0.014 4.014 5 N -0.326 5.326 6 C 0.125 3.875 7 C -0.569 4.569 8 H 0.077 0.923 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.725 3.275 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.301 3.699 16 O -0.406 6.406 17 C -0.181 4.181 18 C -0.720 4.720 19 S 2.592 3.408 20 O -0.928 6.928 21 O -0.929 6.929 22 C -0.696 4.696 23 C -0.092 4.092 24 C -0.122 4.122 25 C -0.137 4.137 26 C -0.131 4.131 27 C -0.138 4.138 28 C -0.122 4.122 29 H 0.126 0.874 30 H 0.137 0.863 31 H 0.116 0.884 32 H 0.096 0.904 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.159 0.841 39 H 0.160 0.840 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.149 0.851 43 H 0.146 0.854 44 H 0.143 0.857 45 H 0.146 0.854 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.046 -6.157 -23.349 24.484 hybrid contribution 1.582 1.019 0.521 1.952 sum -2.465 -5.137 -22.828 23.528 Atomic orbital electron populations 1.81210 1.13011 1.08486 1.09249 1.29047 0.95062 0.93225 0.92900 1.19904 0.81533 1.01334 1.06612 1.21389 0.82022 0.93609 1.04385 1.48205 1.05004 1.70601 1.08764 1.19397 0.92627 0.97563 0.77890 1.21410 1.36848 0.92104 1.06538 0.92299 1.24921 0.95267 0.97821 0.95999 1.69919 1.38165 1.32748 1.12334 0.86504 0.77732 0.84869 0.78370 1.20597 1.21106 1.19877 1.19904 0.87970 0.77526 0.84481 1.90686 1.13591 1.49833 1.86526 1.21506 0.98061 1.05360 0.93143 1.30109 1.12450 1.13401 1.16066 1.08514 0.78179 0.75800 0.78269 1.93593 1.68356 1.46616 1.84195 1.93583 1.68473 1.44974 1.85842 1.29365 1.18707 1.12719 1.08856 1.18943 1.02139 0.94445 0.93652 1.21212 0.98171 0.98302 0.94470 1.21193 0.99107 0.97871 0.95567 1.21289 0.99152 0.92656 1.00012 1.21190 0.99128 0.99074 0.94371 1.21198 0.98215 0.96764 0.95986 0.87443 0.86325 0.88397 0.90424 0.94520 0.93457 0.92626 0.87535 0.87820 0.84050 0.83959 0.83791 0.83778 0.85071 0.85412 0.85657 0.85422 0.85093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.68 18.54 42.15 0.78 -5.90 16 2 C 0.22 2.67 15.43 -20.76 -0.32 2.35 16 3 C -0.05 -0.55 6.03 -29.52 -0.18 -0.73 16 4 C 0.11 1.47 5.17 -4.05 -0.02 1.45 16 5 N -0.59 -10.49 2.46 -175.06 -0.43 -10.92 16 6 C 0.24 5.60 5.16 -5.19 -0.03 5.57 16 7 C -0.53 -13.83 9.39 -34.44 -0.32 -14.16 16 8 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.89 -25.03 13.29 55.43 0.74 -24.29 16 11 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 15 C 0.52 8.94 7.67 -10.99 -0.08 8.85 16 16 O -0.53 -11.33 15.56 5.56 0.09 -11.25 16 17 C -0.14 -1.70 4.26 -27.89 -0.12 -1.82 16 18 C -0.59 -5.90 5.09 37.16 0.19 -5.71 16 19 S 2.41 23.75 4.70 -107.50 -0.51 23.25 16 20 O -0.93 -12.10 18.10 -57.83 -1.05 -13.14 16 21 O -0.93 -11.63 18.10 -57.83 -1.05 -12.68 16 22 C -0.57 -4.01 5.93 36.01 0.21 -3.79 16 23 C -0.09 -0.82 5.14 -104.62 -0.54 -1.36 16 24 C -0.10 -0.91 9.70 -39.58 -0.38 -1.30 16 25 C -0.12 -0.94 10.05 -39.58 -0.40 -1.33 16 26 C -0.11 -0.83 10.05 -39.58 -0.40 -1.22 16 27 C -0.12 -0.93 10.05 -39.58 -0.40 -1.32 16 28 C -0.10 -0.90 9.70 -39.58 -0.38 -1.28 16 29 H 0.11 0.90 7.22 -51.93 -0.38 0.53 16 30 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.10 1.36 8.07 -51.93 -0.42 0.94 16 32 H 0.08 0.85 6.44 -51.93 -0.33 0.51 16 33 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 34 H 0.05 1.24 7.42 -51.93 -0.39 0.85 16 35 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.11 1.16 7.40 -51.92 -0.38 0.78 16 37 H 0.10 1.00 7.19 -51.93 -0.37 0.62 16 38 H 0.14 1.20 8.10 -51.92 -0.42 0.78 16 39 H 0.14 1.33 8.10 -51.93 -0.42 0.90 16 40 H 0.14 0.64 8.09 -51.92 -0.42 0.22 16 41 H 0.14 0.68 8.08 -51.92 -0.42 0.26 16 42 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 43 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 44 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 45 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 46 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 414.61 15.07 6.25 6.25 Total: -1.00 -38.05 414.61 -9.92 -47.97 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -6.45 Total: -0.95 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -3.27 Total: -14.21 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 1.09 Total: -41.11 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -2.01 Total: -37.07 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 23.75 SS G_CDS: -0.51 Total: 23.25 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -38.05 -9.92 -47.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004735718.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.640 kcal (2) G-P(sol) polarization free energy of solvation -38.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds