Wall clock time and date at job start Tue Mar 31 2020 05:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38342 * 119.86372 * 2 1 4 4 C 1.37980 * 120.13524 * 180.02562 * 3 2 1 5 5 C 1.39482 * 119.86170 * 359.97103 * 4 3 2 6 6 C 1.48109 * 120.13480 * 180.02562 * 5 4 3 7 7 N 1.32983 * 120.53295 * 325.01038 * 6 5 4 8 8 N 1.28694 * 120.43413 * 179.97438 * 7 6 5 9 9 C 1.32869 * 121.62097 * 0.02562 * 8 7 6 10 10 S 1.76193 * 119.47206 * 179.97438 * 9 8 7 11 11 C 1.76199 * 100.00214 * 0.02562 * 10 9 8 12 12 H 1.07997 * 119.99832 * 359.97438 * 11 10 9 13 13 C 1.38796 * 119.99800 * 180.02562 * 11 10 9 14 14 N 1.31549 * 120.00214 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99647 * 179.97438 * 13 11 10 16 16 H 1.48509 * 109.47226 * 60.00030 * 15 13 11 17 17 H 1.48497 * 109.47017 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47284 * 300.00094 * 15 13 11 19 19 N 1.32710 * 121.05054 * 359.97438 * 9 8 7 20 20 C 1.33053 * 119.45309 * 0.02562 * 19 9 8 21 21 C 1.48155 * 120.75215 * 179.97438 * 20 19 9 22 22 C 1.39448 * 120.13250 * 144.74486 * 21 20 19 23 23 C 1.37998 * 119.86404 * 179.74101 * 22 21 20 24 24 C 1.38337 * 120.13174 * 0.53898 * 23 22 21 25 25 C 1.50696 * 119.86974 * 179.74097 * 24 23 22 26 26 C 1.38343 * 120.26801 * 359.71438 * 24 23 22 27 27 C 1.37991 * 120.13339 * 0.02581 * 26 24 23 28 28 C 1.39477 * 119.73086 * 0.28737 * 5 4 3 29 29 C 1.37983 * 119.86227 * 359.45553 * 28 5 4 30 30 H 1.09001 * 109.47514 * 89.99769 * 1 2 3 31 31 H 1.08996 * 109.47240 * 209.99967 * 1 2 3 32 32 H 1.09004 * 109.47360 * 330.00173 * 1 2 3 33 33 H 1.08006 * 119.93438 * 359.97438 * 3 2 1 34 34 H 1.07998 * 120.07477 * 180.02562 * 4 3 2 35 35 H 0.97003 * 120.00343 * 180.02562 * 14 13 11 36 36 H 1.07996 * 120.07036 * 359.97438 * 22 21 20 37 37 H 1.08004 * 119.93307 * 180.25101 * 23 22 21 38 38 H 1.09008 * 109.47344 * 269.97988 * 25 24 23 39 39 H 1.09001 * 109.47200 * 29.97067 * 25 24 23 40 40 H 1.08995 * 109.47857 * 149.97659 * 25 24 23 41 41 H 1.07996 * 119.93615 * 180.02562 * 26 24 23 42 42 H 1.07994 * 120.07370 * 179.97438 * 27 26 24 43 43 H 1.08006 * 120.06960 * 179.70273 * 28 5 4 44 44 H 1.08002 * 119.93061 * 180.23759 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1997 0.0000 4 6 3.5756 1.2063 -0.0005 5 6 4.2759 -0.0001 -0.0005 6 6 5.7569 -0.0001 -0.0005 7 7 6.4326 0.9382 -0.6573 8 7 7.7195 0.9367 -0.6557 9 6 8.4142 0.0088 -0.0061 10 16 10.1750 0.0604 -0.0422 11 6 10.4188 1.4904 -1.0424 12 1 9.5672 2.0344 -1.4233 13 6 11.7053 1.9170 -1.3414 14 7 12.7425 1.2540 -0.8777 15 14 11.9637 3.4326 -2.4023 16 1 11.3392 4.6090 -1.7454 17 1 13.4187 3.6756 -2.5722 18 1 11.3385 3.2185 -3.7322 19 7 7.8028 -0.9562 0.6694 20 6 6.4731 -0.9950 0.6960 21 6 5.7610 -2.0596 1.4406 22 6 4.5607 -1.7759 2.0911 23 6 3.8993 -2.7730 2.7786 24 6 4.4305 -4.0493 2.8325 25 6 3.7062 -5.1323 3.5897 26 6 5.6236 -4.3355 2.1934 27 6 6.2915 -3.3481 1.4984 28 6 3.5756 -1.2063 -0.0059 29 6 2.1958 -1.1998 0.0000 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6525 2.1332 -0.0004 34 1 4.1124 2.1434 -0.0001 35 1 13.6417 1.5523 -1.0864 36 1 4.1476 -0.7788 2.0539 37 1 2.9675 -2.5555 3.2795 38 1 4.0481 -5.1428 4.6248 39 1 2.6338 -4.9390 3.5635 40 1 3.9128 -6.0982 3.1291 41 1 6.0332 -5.3338 2.2386 42 1 7.2230 -3.5725 1.0003 43 1 4.1123 -2.1436 -0.0107 44 1 1.6525 -2.1332 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004766865.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:08 Heat of formation + Delta-G solvation = 112.777020 kcal Electronic energy + Delta-G solvation = -28587.622157 eV Core-core repulsion = 24789.212259 eV Total energy + Delta-G solvation = -3798.409897 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 363.110 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.17785 -39.52334 -38.84566 -34.85618 -34.26429 -32.91841 -32.34281 -31.50370 -30.96487 -30.46724 -27.56716 -27.31298 -25.86036 -24.31233 -23.98656 -22.95723 -22.14068 -21.16217 -21.04383 -18.54393 -18.01558 -17.09762 -16.94908 -15.68735 -15.45481 -15.34213 -15.18470 -15.11391 -15.03201 -14.55331 -14.00084 -13.91265 -13.79000 -13.52236 -13.49009 -13.42212 -13.07166 -12.46928 -12.39298 -12.33666 -12.02760 -11.91418 -11.64407 -11.43971 -11.27120 -11.23829 -11.17221 -11.09887 -11.03412 -10.92156 -10.53205 -10.30889 -10.17515 -9.38892 -9.32221 -9.21335 -8.79841 -8.67083 -8.34626 -8.04189 -7.08422 -6.68525 -4.39040 0.45060 0.93447 1.22565 1.61933 1.69601 1.73731 2.53477 3.13031 3.13510 3.19469 3.56930 3.78963 3.81584 4.07214 4.21191 4.42844 4.68222 4.72695 4.78430 4.79226 4.81565 4.83921 4.95158 4.98366 5.03727 5.12225 5.24070 5.28068 5.38114 5.39399 5.43246 5.45490 5.58111 5.64015 5.66408 5.70496 5.85143 5.90514 5.97204 6.02317 6.08476 6.15864 6.37254 6.48757 6.50218 6.55250 6.58313 6.66325 6.88830 6.97566 7.37414 7.51461 8.20923 8.82927 9.20277 10.37591 Molecular weight = 363.11amu Principal moments of inertia in cm(-1) A = 0.010974 B = 0.002955 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.836094 B = 9474.674888 C =11824.455698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.085 4.085 3 C -0.126 4.126 4 C -0.084 4.084 5 C -0.025 4.025 6 C -0.013 4.013 7 N -0.163 5.163 8 N -0.288 5.288 9 C 0.186 3.814 10 S 0.229 5.771 11 C -0.552 4.552 12 H 0.114 0.886 13 C 0.080 3.920 14 N -0.864 5.864 15 Si 0.936 3.064 16 H -0.267 1.267 17 H -0.280 1.280 18 H -0.267 1.267 19 N -0.466 5.466 20 C 0.213 3.787 21 C -0.058 4.058 22 C -0.071 4.071 23 C -0.130 4.130 24 C -0.072 4.072 25 C -0.115 4.115 26 C -0.131 4.131 27 C -0.067 4.067 28 C -0.090 4.090 29 C -0.125 4.125 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.122 0.878 34 H 0.128 0.872 35 H 0.280 0.720 36 H 0.133 0.867 37 H 0.125 0.875 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.125 0.875 42 H 0.132 0.868 43 H 0.129 0.871 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.278 -9.151 6.411 24.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.086 4.086 3 C -0.144 4.144 4 C -0.104 4.104 5 C -0.028 4.028 6 C -0.169 4.169 7 N -0.015 5.015 8 N -0.146 5.146 9 C -0.182 4.182 10 S 0.476 5.524 11 C -0.700 4.700 12 H 0.132 0.868 13 C -0.132 4.132 14 N -0.497 5.497 15 Si 0.761 3.239 16 H -0.191 1.191 17 H -0.205 1.205 18 H -0.191 1.191 19 N -0.189 5.189 20 C 0.050 3.950 21 C -0.060 4.060 22 C -0.091 4.091 23 C -0.148 4.148 24 C -0.072 4.072 25 C -0.172 4.172 26 C -0.149 4.149 27 C -0.087 4.087 28 C -0.110 4.110 29 C -0.143 4.143 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.140 0.860 34 H 0.146 0.854 35 H 0.090 0.910 36 H 0.151 0.849 37 H 0.143 0.857 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.143 0.857 42 H 0.150 0.850 43 H 0.147 0.853 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -19.174 -9.072 6.355 22.143 hybrid contribution -0.932 1.104 -0.779 1.642 sum -20.106 -7.968 5.576 22.335 Atomic orbital electron populations 1.20782 0.91429 1.02554 1.02191 1.19949 0.95864 0.93182 0.99595 1.20922 0.93798 0.97507 1.02128 1.21245 0.93796 0.97598 0.97714 1.18095 0.88926 0.93705 1.02028 1.21430 0.94882 0.97304 1.03246 1.73629 1.02048 1.16574 1.09287 1.74236 0.98963 1.21994 1.19416 1.27740 1.06719 0.90411 0.93289 1.83674 0.81926 1.32343 1.54468 1.23677 0.96835 1.13398 1.36137 0.86814 1.25212 0.94306 0.98262 0.95412 1.69907 0.99381 1.38851 1.41551 0.85910 0.77288 0.80555 0.80181 1.19135 1.20547 1.19128 1.69214 1.07831 1.23153 1.18676 1.20749 0.90304 0.92261 0.91699 1.18261 0.95159 0.92354 1.00223 1.21427 0.93025 1.00339 0.94278 1.20839 1.00689 0.92397 1.00921 1.20034 0.95109 0.94962 0.97110 1.20817 0.99872 0.96730 0.99765 1.20956 0.95409 0.99446 0.99133 1.21290 0.98883 0.91547 0.96947 1.21401 0.94264 0.97525 0.97761 1.20807 0.93475 0.97436 1.02554 0.91307 0.91674 0.91678 0.86008 0.85404 0.90993 0.84923 0.85747 0.91071 0.91512 0.91500 0.85702 0.85034 0.85303 0.86039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 36.01 0.36 -0.45 16 2 C -0.09 -0.86 5.88 -104.54 -0.62 -1.48 16 3 C -0.13 -1.41 9.68 -39.64 -0.38 -1.79 16 4 C -0.08 -1.17 9.61 -39.21 -0.38 -1.55 16 5 C -0.02 -0.38 4.08 -104.92 -0.43 -0.81 16 6 C -0.01 -0.24 6.54 -82.28 -0.54 -0.78 16 7 N -0.16 -3.62 11.31 33.60 0.38 -3.24 16 8 N -0.29 -7.14 9.61 30.23 0.29 -6.85 16 9 C 0.19 4.50 7.90 -90.43 -0.71 3.79 16 10 S 0.23 5.82 21.84 -107.50 -2.35 3.47 16 11 C -0.55 -15.06 9.25 30.94 0.29 -14.78 16 12 H 0.11 3.16 6.52 -52.49 -0.34 2.82 16 13 C 0.08 2.10 5.49 -17.47 -0.10 2.00 16 14 N -0.86 -23.40 13.22 55.49 0.73 -22.66 16 15 Si 0.94 20.59 29.55 -169.99 -5.02 15.57 16 16 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 17 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 18 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 19 N -0.47 -10.16 10.19 -9.61 -0.10 -10.26 16 20 C 0.21 4.05 6.48 -82.23 -0.53 3.52 16 21 C -0.06 -0.88 4.08 -104.92 -0.43 -1.31 16 22 C -0.07 -0.91 5.98 -39.22 -0.23 -1.14 16 23 C -0.13 -1.34 9.68 -39.63 -0.38 -1.72 16 24 C -0.07 -0.70 5.88 -104.55 -0.62 -1.31 16 25 C -0.12 -0.78 10.01 36.00 0.36 -0.42 16 26 C -0.13 -1.43 9.68 -39.63 -0.38 -1.81 16 27 C -0.07 -0.92 9.61 -39.22 -0.38 -1.30 16 28 C -0.09 -1.16 5.97 -39.21 -0.23 -1.40 16 29 C -0.12 -1.32 9.68 -39.64 -0.38 -1.70 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 32 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 33 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 34 H 0.13 1.84 7.99 -52.49 -0.42 1.43 16 35 H 0.28 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.13 1.73 5.67 -52.49 -0.30 1.44 16 37 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 38 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 39 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 40 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 41 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 42 H 0.13 1.87 7.99 -52.49 -0.42 1.45 16 43 H 0.13 1.70 5.66 -52.48 -0.30 1.40 16 44 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 385.54 15.07 5.81 5.81 Total: -1.00 -30.15 385.54 -11.10 -41.25 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -5.13 Total: 1.35 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: -5.72 Total: -24.44 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 1.31 Total: -43.01 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 5.82 SS G_CDS: -2.35 Total: 3.47 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.15 -11.10 -41.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004766865.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.025 kcal (2) G-P(sol) polarization free energy of solvation -30.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds