Wall clock time and date at job start Tue Mar 31 2020 05:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38342 * 119.86372 * 2 1 4 4 C 1.37980 * 120.13524 * 180.02562 * 3 2 1 5 5 C 1.39482 * 119.86170 * 359.97103 * 4 3 2 6 6 C 1.48109 * 120.13480 * 180.02562 * 5 4 3 7 7 N 1.32983 * 120.53295 * 325.01038 * 6 5 4 8 8 N 1.28694 * 120.43413 * 179.97438 * 7 6 5 9 9 C 1.32869 * 121.62097 * 0.02562 * 8 7 6 10 10 S 1.76193 * 119.47206 * 179.97438 * 9 8 7 11 11 C 1.76199 * 100.00214 * 0.02562 * 10 9 8 12 12 H 1.07997 * 119.99832 * 359.97438 * 11 10 9 13 13 C 1.38796 * 119.99800 * 180.02562 * 11 10 9 14 14 N 1.31549 * 120.00214 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99647 * 179.97438 * 13 11 10 16 16 H 1.48509 * 109.47226 * 60.00030 * 15 13 11 17 17 H 1.48497 * 109.47017 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47284 * 300.00094 * 15 13 11 19 19 N 1.32710 * 121.05054 * 359.97438 * 9 8 7 20 20 C 1.33053 * 119.45309 * 0.02562 * 19 9 8 21 21 C 1.48155 * 120.75215 * 179.97438 * 20 19 9 22 22 C 1.39448 * 120.13250 * 144.74486 * 21 20 19 23 23 C 1.37998 * 119.86404 * 179.74101 * 22 21 20 24 24 C 1.38337 * 120.13174 * 0.53898 * 23 22 21 25 25 C 1.50696 * 119.86974 * 179.74097 * 24 23 22 26 26 C 1.38343 * 120.26801 * 359.71438 * 24 23 22 27 27 C 1.37991 * 120.13339 * 0.02581 * 26 24 23 28 28 C 1.39477 * 119.73086 * 0.28737 * 5 4 3 29 29 C 1.37983 * 119.86227 * 359.45553 * 28 5 4 30 30 H 1.09001 * 109.47514 * 89.99769 * 1 2 3 31 31 H 1.08996 * 109.47240 * 209.99967 * 1 2 3 32 32 H 1.09004 * 109.47360 * 330.00173 * 1 2 3 33 33 H 1.08006 * 119.93438 * 359.97438 * 3 2 1 34 34 H 1.07998 * 120.07477 * 180.02562 * 4 3 2 35 35 H 0.97003 * 120.00343 * 180.02562 * 14 13 11 36 36 H 1.07996 * 120.07036 * 359.97438 * 22 21 20 37 37 H 1.08004 * 119.93307 * 180.25101 * 23 22 21 38 38 H 1.09008 * 109.47344 * 269.97988 * 25 24 23 39 39 H 1.09001 * 109.47200 * 29.97067 * 25 24 23 40 40 H 1.08995 * 109.47857 * 149.97659 * 25 24 23 41 41 H 1.07996 * 119.93615 * 180.02562 * 26 24 23 42 42 H 1.07994 * 120.07370 * 179.97438 * 27 26 24 43 43 H 1.08006 * 120.06960 * 179.70273 * 28 5 4 44 44 H 1.08002 * 119.93061 * 180.23759 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1997 0.0000 4 6 3.5756 1.2063 -0.0005 5 6 4.2759 -0.0001 -0.0005 6 6 5.7569 -0.0001 -0.0005 7 7 6.4326 0.9382 -0.6573 8 7 7.7195 0.9367 -0.6557 9 6 8.4142 0.0088 -0.0061 10 16 10.1750 0.0604 -0.0422 11 6 10.4188 1.4904 -1.0424 12 1 9.5672 2.0344 -1.4233 13 6 11.7053 1.9170 -1.3414 14 7 12.7425 1.2540 -0.8777 15 14 11.9637 3.4326 -2.4023 16 1 11.3392 4.6090 -1.7454 17 1 13.4187 3.6756 -2.5722 18 1 11.3385 3.2185 -3.7322 19 7 7.8028 -0.9562 0.6694 20 6 6.4731 -0.9950 0.6960 21 6 5.7610 -2.0596 1.4406 22 6 4.5607 -1.7759 2.0911 23 6 3.8993 -2.7730 2.7786 24 6 4.4305 -4.0493 2.8325 25 6 3.7062 -5.1323 3.5897 26 6 5.6236 -4.3355 2.1934 27 6 6.2915 -3.3481 1.4984 28 6 3.5756 -1.2063 -0.0059 29 6 2.1958 -1.1998 0.0000 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6525 2.1332 -0.0004 34 1 4.1124 2.1434 -0.0001 35 1 13.6417 1.5523 -1.0864 36 1 4.1476 -0.7788 2.0539 37 1 2.9675 -2.5555 3.2795 38 1 4.0481 -5.1428 4.6248 39 1 2.6338 -4.9390 3.5635 40 1 3.9128 -6.0982 3.1291 41 1 6.0332 -5.3338 2.2386 42 1 7.2230 -3.5725 1.0003 43 1 4.1123 -2.1436 -0.0107 44 1 1.6525 -2.1332 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004766865.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:07 Heat of formation + Delta-G solvation = 97.617964 kcal Electronic energy + Delta-G solvation = -28588.279503 eV Core-core repulsion = 24789.212259 eV Total energy + Delta-G solvation = -3799.067243 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 363.110 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.73368 -40.71359 -39.80156 -36.27864 -35.61810 -34.88639 -33.35680 -32.63496 -32.09145 -31.41150 -28.67689 -28.48099 -27.69554 -25.62562 -25.36300 -23.96385 -23.10889 -22.21315 -22.09100 -20.37386 -19.62261 -18.64758 -18.17080 -17.07756 -16.99106 -16.88360 -16.32846 -16.25407 -16.01388 -15.78120 -15.19894 -14.86175 -14.78674 -14.62519 -14.38335 -14.27347 -14.26013 -13.69389 -13.37782 -13.28376 -13.14351 -13.11067 -12.98184 -12.93770 -12.87997 -12.62541 -12.59204 -12.27795 -12.12969 -12.05785 -11.90218 -11.79018 -11.68820 -11.25861 -11.20463 -10.32764 -10.16466 -9.65219 -9.62058 -9.29730 -8.83531 -8.63862 -6.44945 -0.93948 -0.54177 0.25028 0.44277 0.49183 0.66890 0.70877 1.31991 1.38032 1.46259 2.01228 2.28027 2.48813 2.75263 2.79419 2.83587 2.96192 3.05245 3.29475 3.57093 3.87292 3.93528 4.01599 4.03397 4.07627 4.09124 4.13286 4.43718 4.47987 4.49119 4.58145 4.61013 4.83337 4.85104 4.87616 4.89915 4.95173 4.95643 5.12512 5.16429 5.29766 5.32485 5.37195 5.41709 5.44956 5.46939 5.58217 5.65071 5.68810 5.84305 5.99842 6.04972 6.14016 6.82603 7.44094 8.44783 Molecular weight = 363.11amu Principal moments of inertia in cm(-1) A = 0.010974 B = 0.002955 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.836094 B = 9474.674888 C =11824.455698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.065 4.065 3 C -0.127 4.127 4 C -0.092 4.092 5 C -0.063 4.063 6 C 0.016 3.984 7 N -0.199 5.199 8 N -0.324 5.324 9 C 0.190 3.810 10 S 0.172 5.828 11 C -0.575 4.575 12 H 0.097 0.903 13 C 0.036 3.964 14 N -0.896 5.896 15 Si 1.000 3.000 16 H -0.265 1.265 17 H -0.262 1.262 18 H -0.266 1.266 19 N -0.480 5.480 20 C 0.214 3.786 21 C -0.091 4.091 22 C -0.067 4.067 23 C -0.122 4.122 24 C -0.053 4.053 25 C -0.115 4.115 26 C -0.131 4.131 27 C -0.078 4.078 28 C -0.082 4.082 29 C -0.118 4.118 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.146 0.854 34 H 0.110 0.890 35 H 0.285 0.715 36 H 0.128 0.872 37 H 0.159 0.841 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.149 0.851 42 H 0.113 0.887 43 H 0.126 0.874 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.095 -11.177 7.815 30.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.066 4.066 3 C -0.145 4.145 4 C -0.112 4.112 5 C -0.066 4.066 6 C -0.141 4.141 7 N -0.047 5.047 8 N -0.178 5.178 9 C -0.181 4.181 10 S 0.415 5.585 11 C -0.724 4.724 12 H 0.115 0.885 13 C -0.171 4.171 14 N -0.530 5.530 15 Si 0.820 3.180 16 H -0.190 1.190 17 H -0.186 1.186 18 H -0.190 1.190 19 N -0.202 5.202 20 C 0.052 3.948 21 C -0.092 4.092 22 C -0.086 4.086 23 C -0.140 4.140 24 C -0.054 4.054 25 C -0.172 4.172 26 C -0.149 4.149 27 C -0.097 4.097 28 C -0.101 4.101 29 C -0.135 4.135 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.164 0.836 34 H 0.128 0.872 35 H 0.095 0.905 36 H 0.146 0.854 37 H 0.176 0.824 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.167 0.833 42 H 0.132 0.868 43 H 0.144 0.856 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -25.073 -11.072 7.742 28.482 hybrid contribution 0.191 1.460 -1.024 1.793 sum -24.883 -9.613 6.719 27.508 Atomic orbital electron populations 1.20891 0.88459 1.04270 1.03352 1.20412 0.97865 0.92283 0.96056 1.21193 0.92416 0.99433 1.01408 1.21240 0.95279 0.96402 0.98284 1.18082 0.86392 0.95627 1.06488 1.22276 0.97265 0.95136 0.99405 1.73577 1.01217 1.18585 1.11288 1.74159 1.00301 1.22910 1.20457 1.27503 1.06116 0.90886 0.93558 1.83485 0.83765 1.33814 1.57460 1.23658 0.96919 1.14237 1.37548 0.88483 1.26082 0.93670 1.00991 0.96397 1.69976 0.99770 1.40387 1.42914 0.84987 0.78027 0.76767 0.78201 1.19006 1.18604 1.19031 1.69259 1.09494 1.22739 1.18755 1.21602 0.89395 0.93063 0.90754 1.18221 0.96697 0.91688 1.02638 1.21416 0.92013 1.00967 0.94242 1.21191 1.01377 0.91710 0.99686 1.20484 0.94055 0.95672 0.95151 1.20925 1.00624 0.95884 0.99733 1.21229 0.95718 0.99685 0.98224 1.21281 0.98743 0.91919 0.97806 1.21394 0.95411 0.96144 0.97200 1.21160 0.92196 0.99165 1.01012 0.90212 0.89648 0.90447 0.83632 0.87152 0.90499 0.85409 0.82385 0.89978 0.89506 0.90280 0.83337 0.86843 0.85641 0.82653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.01 71.24 0.71 -0.23 16 2 C -0.07 -1.02 5.88 -19.81 -0.12 -1.13 16 3 C -0.13 -2.47 9.68 22.23 0.22 -2.25 16 4 C -0.09 -2.53 9.61 22.51 0.22 -2.32 16 5 C -0.06 -1.93 4.08 -20.06 -0.08 -2.01 16 6 C 0.02 0.65 6.54 42.27 0.28 0.93 16 7 N -0.20 -9.48 11.31 -47.63 -0.54 -10.02 16 8 N -0.32 -17.48 9.61 -58.26 -0.56 -18.04 16 9 C 0.19 10.06 7.90 180.28 1.43 11.48 16 10 S 0.17 9.59 21.84 -56.49 -1.23 8.35 16 11 C -0.58 -33.99 9.25 67.95 0.63 -33.36 16 12 H 0.10 5.89 6.52 -2.91 -0.02 5.87 16 13 C 0.04 2.02 5.49 84.87 0.47 2.49 16 14 N -0.90 -51.25 13.22 21.64 0.29 -50.96 16 15 Si 1.00 44.18 29.55 68.60 2.03 46.20 16 16 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 17 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 18 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 19 N -0.48 -22.59 10.19 -184.32 -1.88 -24.47 16 20 C 0.21 8.58 6.48 42.27 0.27 8.86 16 21 C -0.09 -2.73 4.08 -20.06 -0.08 -2.82 16 22 C -0.07 -1.56 5.98 22.50 0.13 -1.43 16 23 C -0.12 -1.95 9.68 22.24 0.22 -1.73 16 24 C -0.05 -0.79 5.88 -19.82 -0.12 -0.90 16 25 C -0.12 -0.88 10.01 71.23 0.71 -0.17 16 26 C -0.13 -2.48 9.68 22.24 0.22 -2.26 16 27 C -0.08 -2.11 9.61 22.51 0.22 -1.89 16 28 C -0.08 -1.94 5.97 22.51 0.13 -1.80 16 29 C -0.12 -1.94 9.68 22.23 0.22 -1.73 16 30 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.08 0.44 8.08 -2.39 -0.02 0.42 16 32 H 0.08 0.52 8.08 -2.38 -0.02 0.50 16 33 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 34 H 0.11 3.34 7.99 -2.91 -0.02 3.32 16 35 H 0.29 14.95 8.31 -92.71 -0.77 14.18 16 36 H 0.13 3.12 5.67 -2.91 -0.02 3.10 16 37 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 38 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 39 H 0.09 0.40 8.08 -2.39 -0.02 0.38 16 40 H 0.08 0.48 8.08 -2.39 -0.02 0.47 16 41 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 42 H 0.11 3.41 7.99 -2.91 -0.02 3.39 16 43 H 0.13 3.08 5.66 -2.91 -0.02 3.06 16 44 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -74.57 385.54 4.81 -69.76 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 1.04 Total: 11.45 kcal Atomic # 6 Polarization: -37.94 SS G_CDS: 5.66 Total: -32.28 kcal Atomic # 7 Polarization: -100.79 SS G_CDS: -2.69 Total: -103.48 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: 9.59 SS G_CDS: -1.23 Total: 8.35 kcal Total: -74.57 4.81 -69.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004766865.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.382 kcal (2) G-P(sol) polarization free energy of solvation -74.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds