Wall clock time and date at job start Tue Mar 31 2020 05:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34451 * 126.10656 * 2 1 4 4 C 1.50702 * 125.17268 * 359.95500 * 3 2 1 5 5 C 1.50708 * 109.47204 * 270.00158 * 4 3 2 6 6 H 1.08006 * 119.99554 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99885 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99877 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99610 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47083 * 90.00410 * 9 7 5 11 11 H 1.48503 * 109.46648 * 210.00210 * 9 7 5 12 12 H 1.48494 * 109.47260 * 329.99572 * 9 7 5 13 13 N 1.37049 * 109.65232 * 179.97438 * 3 2 1 14 14 C 1.36633 * 131.32667 * 179.97438 * 13 3 2 15 15 C 1.35087 * 120.75209 * 180.02562 * 14 13 3 16 16 C 1.40225 * 120.36361 * 359.97438 * 15 14 13 17 17 C 1.36460 * 119.43316 * 0.22994 * 16 15 14 18 18 C 1.36904 * 108.75584 * 359.97438 * 13 3 2 19 19 C 1.40862 * 107.44509 * 359.97438 * 18 13 3 20 20 C 1.41755 * 126.81948 * 179.97438 * 19 18 13 21 21 O 1.21858 * 120.00283 * 265.17658 * 20 19 18 22 22 C 1.47734 * 119.99727 * 85.17908 * 20 19 18 23 23 C 1.39695 * 120.07869 * 5.06612 * 22 20 19 24 24 C 1.37791 * 119.99858 * 179.67278 * 23 22 20 25 25 C 1.38847 * 120.21663 * 0.64424 * 24 23 22 26 26 C 1.39539 * 120.05552 * 359.63753 * 25 24 23 27 27 C 1.38142 * 119.97535 * 0.03440 * 26 25 24 28 28 O 1.36538 * 108.58996 * 180.02562 * 26 25 24 29 29 C 1.43974 * 105.45903 * 342.68985 * 28 26 25 30 30 O 1.36387 * 131.35432 * 179.66587 * 25 24 23 31 31 H 1.09002 * 109.47404 * 270.00230 * 1 2 3 32 32 H 1.09003 * 109.47149 * 30.00256 * 1 2 3 33 33 H 1.09000 * 109.46988 * 150.00077 * 1 2 3 34 34 H 1.08998 * 109.47092 * 30.00231 * 4 3 2 35 35 H 1.09000 * 109.46886 * 150.00547 * 4 3 2 36 36 H 0.97003 * 119.99373 * 180.02562 * 8 7 5 37 37 H 1.07993 * 119.62795 * 0.02562 * 14 13 3 38 38 H 1.08008 * 119.81895 * 180.02562 * 15 14 13 39 39 H 1.07997 * 120.28519 * 179.97438 * 16 15 14 40 40 H 1.07996 * 120.33616 * 179.68552 * 17 16 15 41 41 H 1.07990 * 119.99689 * 359.97302 * 23 22 20 42 42 H 1.07997 * 119.89035 * 180.27222 * 24 23 22 43 43 H 1.08005 * 120.04294 * 179.97438 * 27 26 25 44 44 H 1.08994 * 110.57365 * 268.62481 * 29 28 26 45 45 H 1.08999 * 110.56304 * 145.76331 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2993 1.0863 0.0000 4 6 1.8156 2.5135 -0.0010 5 6 1.6552 2.9887 -1.4222 6 1 1.8806 2.3234 -2.2426 7 6 1.2208 4.2726 -1.6749 8 7 0.9469 5.0827 -0.6758 9 14 1.0214 4.8612 -3.4365 10 1 -0.3577 4.5686 -3.9030 11 1 1.2653 6.3247 -3.4999 12 1 1.9980 4.1585 -4.3068 13 7 3.6137 0.6981 0.0006 14 6 4.7696 1.4265 0.0003 15 6 5.9729 0.8126 0.0005 16 6 6.0545 -0.5872 0.0015 17 6 4.9070 -1.3258 -0.0025 18 6 3.6686 -0.6699 0.0015 19 6 2.3428 -1.1458 0.0022 20 6 1.9267 -2.5009 0.0027 21 8 1.6626 -3.0576 -1.0486 22 6 1.8131 -3.2381 1.2779 23 6 2.0123 -2.5741 2.4907 24 6 1.8993 -3.2619 3.6793 25 6 1.6008 -4.6179 3.6764 26 6 1.4064 -5.2881 2.4680 27 6 1.5118 -4.6021 1.2736 28 8 1.1281 -6.5976 2.7365 29 6 1.5566 -6.8104 4.0944 30 8 1.4439 -5.5082 4.6976 31 1 -0.3634 0.0000 1.0277 32 1 -0.3633 0.8900 -0.5139 33 1 -0.3633 -0.8900 -0.5138 34 1 0.8558 2.5723 0.5123 35 1 2.5416 3.1435 0.5130 36 1 0.6409 5.9859 -0.8537 37 1 4.7208 2.5054 0.0000 38 1 6.8772 1.4033 0.0008 39 1 7.0172 -1.0767 0.0012 40 1 4.9529 -2.4048 -0.0069 41 1 2.2501 -1.5207 2.4968 42 1 2.0494 -2.7458 4.6161 43 1 1.3620 -5.1199 0.3377 44 1 2.5900 -7.1559 4.1202 45 1 0.9011 -7.5227 4.5955 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004932941.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:18 Heat of formation + Delta-G solvation = 0.808335 kcal Electronic energy + Delta-G solvation = -31676.381752 eV Core-core repulsion = 27398.070906 eV Total energy + Delta-G solvation = -4278.310846 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.130 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.42720 -41.91293 -39.35991 -37.29532 -36.58411 -36.52856 -33.48580 -32.85116 -31.30842 -30.91839 -30.57922 -29.29937 -27.48444 -26.41650 -26.03151 -24.45295 -23.53060 -23.12373 -22.44437 -21.68187 -19.78886 -19.26855 -18.15647 -17.69557 -17.55713 -16.69011 -16.58685 -16.29813 -16.02022 -15.40465 -15.32790 -14.80405 -14.72355 -14.64727 -14.57836 -14.25880 -14.08908 -13.69953 -13.58525 -13.27144 -13.00074 -12.87570 -12.61827 -12.56806 -12.27977 -12.10194 -11.78908 -11.42566 -11.36573 -11.33552 -11.13303 -11.06422 -10.79931 -10.71760 -10.63656 -9.94300 -9.91234 -9.63800 -9.50249 -9.12159 -8.54157 -8.33274 -7.83770 -6.75606 -6.13217 -4.20444 0.45867 1.03009 1.12677 1.70901 2.24693 2.52801 3.09782 3.19235 3.25004 3.27341 3.32225 3.37951 3.52876 3.81155 4.19709 4.33048 4.36157 4.38098 4.59589 4.84374 4.89044 4.91060 5.04278 5.05301 5.19036 5.24809 5.25823 5.27597 5.41583 5.65560 5.76250 5.80434 5.85808 6.00025 6.05834 6.10491 6.13968 6.19294 6.22683 6.28324 6.32584 6.43714 6.55917 6.66227 6.83952 6.88323 7.10423 7.30137 7.34876 7.67195 7.71636 7.80113 7.83845 8.17556 8.84541 9.45196 10.93339 Molecular weight = 363.13amu Principal moments of inertia in cm(-1) A = 0.013685 B = 0.002661 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.568609 B =10518.739666 C =11339.215743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.084 4.084 3 C 0.040 3.960 4 C 0.081 3.919 5 C -0.516 4.516 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.892 5.892 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.334 5.334 14 C 0.085 3.915 15 C -0.172 4.172 16 C -0.117 4.117 17 C -0.104 4.104 18 C 0.073 3.927 19 C -0.270 4.270 20 C 0.497 3.503 21 O -0.450 6.450 22 C -0.147 4.147 23 C -0.042 4.042 24 C -0.115 4.115 25 C 0.058 3.942 26 C 0.012 3.988 27 C -0.047 4.047 28 O -0.308 6.308 29 C 0.212 3.788 30 O -0.308 6.308 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.025 0.975 36 H 0.264 0.736 37 H 0.165 0.835 38 H 0.141 0.859 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.151 0.849 42 H 0.141 0.859 43 H 0.145 0.855 44 H 0.084 0.916 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.624 -17.541 10.432 21.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 C -0.068 4.068 4 C 0.044 3.956 5 C -0.555 4.555 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.531 5.531 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.199 1.199 13 N 0.003 4.997 14 C -0.037 4.037 15 C -0.192 4.192 16 C -0.137 4.137 17 C -0.122 4.122 18 C -0.033 4.033 19 C -0.279 4.279 20 C 0.375 3.625 21 O -0.325 6.325 22 C -0.149 4.149 23 C -0.061 4.061 24 C -0.133 4.133 25 C 0.013 3.987 26 C -0.032 4.032 27 C -0.066 4.066 28 O -0.224 6.224 29 C 0.101 3.899 30 O -0.223 6.223 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.183 0.817 38 H 0.158 0.842 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.168 0.832 42 H 0.159 0.841 43 H 0.163 0.837 44 H 0.102 0.898 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.393 -17.589 10.022 21.229 hybrid contribution 0.042 0.183 -0.777 0.799 sum 6.435 -17.405 9.245 20.733 Atomic orbital electron populations 1.20251 0.89432 1.03019 1.01523 1.19022 0.95315 0.89255 1.05037 1.21249 0.78541 0.99129 1.07924 1.17947 0.97036 0.82475 0.98174 1.21054 1.45492 0.97520 0.91388 0.92439 1.24966 0.95109 0.96597 0.97284 1.69939 1.45162 1.07245 1.30737 0.86548 0.78799 0.77781 0.84723 1.20379 1.21135 1.19852 1.41442 1.06096 1.06093 1.46089 1.21827 0.83923 0.98618 0.99320 1.20586 0.96468 0.95112 1.07031 1.20884 0.98063 0.93634 1.01155 1.20347 0.89724 0.99823 1.02351 1.18266 0.93375 0.82626 1.09039 1.18448 0.91939 0.93957 1.23524 1.18103 0.72101 0.85805 0.86505 1.90664 1.37385 1.70087 1.34328 1.20401 1.05484 0.92978 0.96007 1.21293 0.94253 1.00710 0.89803 1.20083 1.03661 0.89707 0.99875 1.20113 1.00491 0.92907 0.85199 1.19587 1.04839 0.84082 0.94660 1.20189 0.97671 0.92938 0.95777 1.87390 1.79895 1.24466 1.30667 1.25637 1.01667 0.85735 0.76891 1.87339 1.88312 1.15711 1.30982 0.91950 0.89849 0.92588 0.93402 0.95646 0.92680 0.81741 0.84151 0.85389 0.85073 0.83160 0.84111 0.83733 0.89815 0.85099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.51 9.74 36.00 0.35 -1.16 16 2 C -0.08 -1.63 6.14 -104.59 -0.64 -2.27 16 3 C 0.04 0.82 6.10 -81.60 -0.50 0.33 16 4 C 0.08 1.93 4.85 -29.03 -0.14 1.79 16 5 C -0.52 -13.64 9.09 -34.44 -0.31 -13.95 16 6 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -24.83 13.29 55.43 0.74 -24.09 16 9 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 N -0.33 -6.25 2.92 -56.60 -0.17 -6.42 16 14 C 0.08 1.37 10.65 -16.53 -0.18 1.20 16 15 C -0.17 -2.23 9.98 -39.96 -0.40 -2.63 16 16 C -0.12 -1.45 10.09 -39.48 -0.40 -1.85 16 17 C -0.10 -1.49 10.04 -39.51 -0.40 -1.88 16 18 C 0.07 1.27 6.72 -83.90 -0.56 0.71 16 19 C -0.27 -4.87 4.28 -106.19 -0.45 -5.32 16 20 C 0.50 8.35 6.43 -34.36 -0.22 8.13 16 21 O -0.45 -8.61 17.11 5.05 0.09 -8.53 16 22 C -0.15 -2.05 5.87 -104.93 -0.62 -2.67 16 23 C -0.04 -0.52 9.42 -39.20 -0.37 -0.89 16 24 C -0.11 -1.26 10.04 -39.52 -0.40 -1.66 16 25 C 0.06 0.68 7.16 -38.87 -0.28 0.40 16 26 C 0.01 0.15 7.14 -39.13 -0.28 -0.13 16 27 C -0.05 -0.62 9.60 -39.08 -0.38 -0.99 16 28 O -0.31 -3.48 11.41 -45.81 -0.52 -4.00 16 29 C 0.21 1.65 8.88 101.05 0.90 2.54 16 30 O -0.31 -3.28 11.39 -45.32 -0.52 -3.80 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.08 1.61 7.66 -51.93 -0.40 1.21 16 33 H 0.06 0.95 8.02 -51.93 -0.42 0.53 16 34 H 0.05 1.18 7.64 -51.93 -0.40 0.79 16 35 H 0.03 0.62 7.81 -51.93 -0.41 0.22 16 36 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.17 2.59 7.79 -52.49 -0.41 2.18 16 38 H 0.14 1.38 8.06 -52.48 -0.42 0.96 16 39 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 41 H 0.15 1.85 7.16 -52.49 -0.38 1.48 16 42 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 43 H 0.14 1.86 7.65 -52.48 -0.40 1.46 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.13 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 391.10 15.07 5.89 5.89 Total: -1.00 -31.69 391.10 -10.18 -41.87 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -5.30 Total: 1.91 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -5.37 Total: -18.73 kcal Atomic # 7 Polarization: -31.08 SS G_CDS: 0.57 Total: -30.51 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.95 Total: -16.33 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.69 -10.18 -41.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004932941.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.681 kcal (2) G-P(sol) polarization free energy of solvation -31.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds