Wall clock time and date at job start Tue Mar 31 2020 05:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34451 * 126.10656 * 2 1 4 4 C 1.50702 * 125.17268 * 359.95500 * 3 2 1 5 5 C 1.50708 * 109.47204 * 270.00158 * 4 3 2 6 6 H 1.08006 * 119.99554 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99885 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99877 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99610 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47083 * 90.00410 * 9 7 5 11 11 H 1.48503 * 109.46648 * 210.00210 * 9 7 5 12 12 H 1.48494 * 109.47260 * 329.99572 * 9 7 5 13 13 N 1.37049 * 109.65232 * 179.97438 * 3 2 1 14 14 C 1.36633 * 131.32667 * 179.97438 * 13 3 2 15 15 C 1.35087 * 120.75209 * 180.02562 * 14 13 3 16 16 C 1.40225 * 120.36361 * 359.97438 * 15 14 13 17 17 C 1.36460 * 119.43316 * 0.22994 * 16 15 14 18 18 C 1.36904 * 108.75584 * 359.97438 * 13 3 2 19 19 C 1.40862 * 107.44509 * 359.97438 * 18 13 3 20 20 C 1.41755 * 126.81948 * 179.97438 * 19 18 13 21 21 O 1.21858 * 120.00283 * 265.17658 * 20 19 18 22 22 C 1.47734 * 119.99727 * 85.17908 * 20 19 18 23 23 C 1.39695 * 120.07869 * 5.06612 * 22 20 19 24 24 C 1.37791 * 119.99858 * 179.67278 * 23 22 20 25 25 C 1.38847 * 120.21663 * 0.64424 * 24 23 22 26 26 C 1.39539 * 120.05552 * 359.63753 * 25 24 23 27 27 C 1.38142 * 119.97535 * 0.03440 * 26 25 24 28 28 O 1.36538 * 108.58996 * 180.02562 * 26 25 24 29 29 C 1.43974 * 105.45903 * 342.68985 * 28 26 25 30 30 O 1.36387 * 131.35432 * 179.66587 * 25 24 23 31 31 H 1.09002 * 109.47404 * 270.00230 * 1 2 3 32 32 H 1.09003 * 109.47149 * 30.00256 * 1 2 3 33 33 H 1.09000 * 109.46988 * 150.00077 * 1 2 3 34 34 H 1.08998 * 109.47092 * 30.00231 * 4 3 2 35 35 H 1.09000 * 109.46886 * 150.00547 * 4 3 2 36 36 H 0.97003 * 119.99373 * 180.02562 * 8 7 5 37 37 H 1.07993 * 119.62795 * 0.02562 * 14 13 3 38 38 H 1.08008 * 119.81895 * 180.02562 * 15 14 13 39 39 H 1.07997 * 120.28519 * 179.97438 * 16 15 14 40 40 H 1.07996 * 120.33616 * 179.68552 * 17 16 15 41 41 H 1.07990 * 119.99689 * 359.97302 * 23 22 20 42 42 H 1.07997 * 119.89035 * 180.27222 * 24 23 22 43 43 H 1.08005 * 120.04294 * 179.97438 * 27 26 25 44 44 H 1.08994 * 110.57365 * 268.62481 * 29 28 26 45 45 H 1.08999 * 110.56304 * 145.76331 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2993 1.0863 0.0000 4 6 1.8156 2.5135 -0.0010 5 6 1.6552 2.9887 -1.4222 6 1 1.8806 2.3234 -2.2426 7 6 1.2208 4.2726 -1.6749 8 7 0.9469 5.0827 -0.6758 9 14 1.0214 4.8612 -3.4365 10 1 -0.3577 4.5686 -3.9030 11 1 1.2653 6.3247 -3.4999 12 1 1.9980 4.1585 -4.3068 13 7 3.6137 0.6981 0.0006 14 6 4.7696 1.4265 0.0003 15 6 5.9729 0.8126 0.0005 16 6 6.0545 -0.5872 0.0015 17 6 4.9070 -1.3258 -0.0025 18 6 3.6686 -0.6699 0.0015 19 6 2.3428 -1.1458 0.0022 20 6 1.9267 -2.5009 0.0027 21 8 1.6626 -3.0576 -1.0486 22 6 1.8131 -3.2381 1.2779 23 6 2.0123 -2.5741 2.4907 24 6 1.8993 -3.2619 3.6793 25 6 1.6008 -4.6179 3.6764 26 6 1.4064 -5.2881 2.4680 27 6 1.5118 -4.6021 1.2736 28 8 1.1281 -6.5976 2.7365 29 6 1.5566 -6.8104 4.0944 30 8 1.4439 -5.5082 4.6976 31 1 -0.3634 0.0000 1.0277 32 1 -0.3633 0.8900 -0.5139 33 1 -0.3633 -0.8900 -0.5138 34 1 0.8558 2.5723 0.5123 35 1 2.5416 3.1435 0.5130 36 1 0.6409 5.9859 -0.8537 37 1 4.7208 2.5054 0.0000 38 1 6.8772 1.4033 0.0008 39 1 7.0172 -1.0767 0.0012 40 1 4.9529 -2.4048 -0.0069 41 1 2.2501 -1.5207 2.4968 42 1 2.0494 -2.7458 4.6161 43 1 1.3620 -5.1199 0.3377 44 1 2.5900 -7.1559 4.1202 45 1 0.9011 -7.5227 4.5955 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004932941.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:17 Heat of formation + Delta-G solvation = -14.563812 kcal Electronic energy + Delta-G solvation = -31677.048338 eV Core-core repulsion = 27398.070906 eV Total energy + Delta-G solvation = -4278.977432 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.130 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.33591 -43.16878 -40.56358 -38.33486 -37.83368 -37.38708 -35.35651 -34.23246 -32.80921 -31.88646 -31.56155 -30.87592 -28.80898 -27.80212 -26.90257 -25.72664 -25.09423 -24.07262 -23.54331 -23.06462 -21.02576 -20.56537 -19.00171 -18.75897 -18.57422 -18.40696 -17.73918 -17.54931 -17.22727 -16.61377 -16.48813 -16.36742 -15.99757 -15.94448 -15.54491 -15.44828 -14.97102 -14.92885 -14.68975 -14.40555 -14.17685 -14.10287 -13.95152 -13.93350 -13.71187 -13.44973 -13.20446 -13.15008 -12.84451 -12.61281 -12.46997 -12.37105 -12.30352 -12.01434 -11.90700 -11.71259 -11.45055 -11.16424 -11.00638 -10.62334 -10.05724 -9.25111 -9.22125 -8.33583 -7.97694 -6.34105 -0.58015 -0.06124 0.09965 0.46861 1.13618 1.37201 1.38935 1.48571 1.64767 1.79785 1.89644 2.38345 2.40962 2.52015 2.62551 3.09228 3.22915 3.29653 3.69268 3.76256 3.89894 3.94563 4.00773 4.05674 4.06531 4.13103 4.22021 4.27418 4.39395 4.46732 4.48386 4.67351 4.68642 4.84109 4.86473 4.91467 4.91852 5.06003 5.09268 5.15445 5.19941 5.24062 5.24437 5.29312 5.35154 5.41888 5.68723 5.72931 5.91143 5.98565 6.12039 6.19649 6.44363 6.46784 6.75188 7.34697 8.86030 Molecular weight = 363.13amu Principal moments of inertia in cm(-1) A = 0.013685 B = 0.002661 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.568609 B =10518.739666 C =11339.215743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.089 4.089 3 C -0.004 4.004 4 C 0.099 3.901 5 C -0.525 4.525 6 H 0.041 0.959 7 C 0.018 3.982 8 N -0.921 5.921 9 Si 0.953 3.047 10 H -0.274 1.274 11 H -0.276 1.276 12 H -0.273 1.273 13 N -0.338 5.338 14 C 0.043 3.957 15 C -0.143 4.143 16 C -0.092 4.092 17 C -0.121 4.121 18 C 0.079 3.921 19 C -0.293 4.293 20 C 0.505 3.495 21 O -0.486 6.486 22 C -0.158 4.158 23 C -0.036 4.036 24 C -0.109 4.109 25 C 0.063 3.937 26 C 0.008 3.992 27 C -0.053 4.053 28 O -0.322 6.322 29 C 0.203 3.797 30 O -0.314 6.314 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.026 0.974 35 H 0.008 0.992 36 H 0.267 0.733 37 H 0.157 0.843 38 H 0.182 0.818 39 H 0.176 0.824 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.166 0.834 43 H 0.140 0.860 44 H 0.110 0.890 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.102 -19.435 11.474 24.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.092 4.092 3 C -0.112 4.112 4 C 0.062 3.938 5 C -0.564 4.564 6 H 0.060 0.940 7 C -0.182 4.182 8 N -0.561 5.561 9 Si 0.779 3.221 10 H -0.200 1.200 11 H -0.201 1.201 12 H -0.198 1.198 13 N -0.001 5.001 14 C -0.078 4.078 15 C -0.163 4.163 16 C -0.113 4.113 17 C -0.139 4.139 18 C -0.029 4.029 19 C -0.300 4.300 20 C 0.385 3.615 21 O -0.364 6.364 22 C -0.160 4.160 23 C -0.054 4.054 24 C -0.127 4.127 25 C 0.018 3.982 26 C -0.037 4.037 27 C -0.071 4.071 28 O -0.239 6.239 29 C 0.093 3.907 30 O -0.230 6.230 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.045 0.955 35 H 0.026 0.974 36 H 0.076 0.924 37 H 0.174 0.826 38 H 0.199 0.801 39 H 0.193 0.807 40 H 0.170 0.830 41 H 0.165 0.835 42 H 0.184 0.816 43 H 0.158 0.842 44 H 0.127 0.873 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 8.874 -19.478 11.084 24.104 hybrid contribution -0.533 0.651 -0.984 1.295 sum 8.341 -18.826 10.100 22.935 Atomic orbital electron populations 1.20206 0.89096 1.01914 1.02502 1.19205 0.95840 0.89748 1.04419 1.20681 0.80249 0.97735 1.12497 1.17512 0.95524 0.84539 0.96274 1.21242 1.45260 0.97532 0.92320 0.94028 1.25690 0.94811 0.96712 1.00950 1.70030 1.45934 1.07597 1.32523 0.85621 0.78685 0.77585 0.80240 1.19984 1.20110 1.19826 1.41472 1.05889 1.06850 1.45879 1.22154 0.84484 0.98800 1.02403 1.21164 0.96347 0.95969 1.02832 1.21470 0.99337 0.93189 0.97289 1.20718 0.88996 1.01122 1.03078 1.18760 0.94484 0.82166 1.07448 1.18527 0.92162 0.94099 1.25229 1.18247 0.70765 0.85348 0.87114 1.90636 1.39341 1.70662 1.35720 1.20098 1.07560 0.93233 0.95096 1.21252 0.93928 1.00526 0.89742 1.20270 1.02630 0.89570 1.00251 1.20258 0.99447 0.93247 0.85296 1.19601 1.04678 0.84807 0.94568 1.20119 0.98100 0.92746 0.96177 1.87375 1.80115 1.23782 1.32597 1.26233 1.04199 0.84957 0.75352 1.87332 1.88085 1.16621 1.30954 0.89966 0.92194 0.92165 0.95540 0.97412 0.92422 0.82603 0.80118 0.80684 0.83016 0.83468 0.81629 0.84197 0.87291 0.81723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.03 9.74 71.24 0.69 -2.34 16 2 C -0.09 -3.67 6.14 -19.84 -0.12 -3.79 16 3 C 0.00 -0.18 6.10 40.88 0.25 0.07 16 4 C 0.10 5.05 4.85 29.11 0.14 5.19 16 5 C -0.53 -29.21 9.09 25.60 0.23 -28.97 16 6 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 7 C 0.02 0.97 5.46 84.65 0.46 1.44 16 8 N -0.92 -52.94 13.29 21.45 0.28 -52.65 16 9 Si 0.95 43.82 29.54 68.60 2.03 45.84 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 12 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 13 N -0.34 -12.96 2.92 -332.97 -0.97 -13.94 16 14 C 0.04 1.37 10.65 83.22 0.89 2.26 16 15 C -0.14 -3.23 9.98 22.03 0.22 -3.01 16 16 C -0.09 -1.88 10.09 22.34 0.23 -1.66 16 17 C -0.12 -3.17 10.04 22.32 0.22 -2.94 16 18 C 0.08 2.75 6.72 39.46 0.26 3.01 16 19 C -0.29 -10.84 4.28 -20.88 -0.09 -10.93 16 20 C 0.50 17.42 6.43 25.65 0.17 17.59 16 21 O -0.49 -19.32 17.11 -4.86 -0.08 -19.41 16 22 C -0.16 -4.42 5.87 -20.06 -0.12 -4.54 16 23 C -0.04 -0.86 9.42 22.52 0.21 -0.65 16 24 C -0.11 -2.19 10.04 22.31 0.22 -1.96 16 25 C 0.06 1.35 7.16 22.73 0.16 1.52 16 26 C 0.01 0.18 7.14 22.56 0.16 0.34 16 27 C -0.05 -1.38 9.60 22.60 0.22 -1.16 16 28 O -0.32 -6.70 11.41 -76.50 -0.87 -7.57 16 29 C 0.20 2.53 8.88 113.37 1.01 3.54 16 30 O -0.31 -5.84 11.39 -74.73 -0.85 -6.70 16 31 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.06 2.51 7.66 -2.39 -0.02 2.49 16 33 H 0.06 2.17 8.02 -2.39 -0.02 2.15 16 34 H 0.03 1.42 7.64 -2.39 -0.02 1.40 16 35 H 0.01 0.40 7.81 -2.39 -0.02 0.39 16 36 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 37 H 0.16 5.11 7.79 -2.91 -0.02 5.09 16 38 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 39 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 40 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 41 H 0.15 3.62 7.16 -2.92 -0.02 3.60 16 42 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 43 H 0.14 3.71 7.65 -2.91 -0.02 3.68 16 44 H 0.11 0.83 8.14 -2.39 -0.02 0.82 16 45 H 0.17 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -72.72 391.10 5.99 -66.73 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 1.04 Total: 14.70 kcal Atomic # 6 Polarization: -32.43 SS G_CDS: 5.42 Total: -27.01 kcal Atomic # 7 Polarization: -65.90 SS G_CDS: -0.69 Total: -66.59 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -1.81 Total: -33.67 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -72.72 5.99 -66.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004932941.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.167 kcal (2) G-P(sol) polarization free energy of solvation -72.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds