Wall clock time and date at job start Tue Mar 31 2020 06:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35953 * 117.00002 * 2 1 4 4 C 1.38038 * 119.99641 * 0.02562 * 3 2 1 5 5 C 1.40044 * 119.83361 * 179.97438 * 4 3 2 6 6 C 1.46856 * 120.08356 * 179.97438 * 5 4 3 7 7 C 1.35237 * 120.00309 * 180.02562 * 6 5 4 8 8 C 1.46185 * 119.99969 * 180.02562 * 7 6 5 9 9 O 1.21882 * 120.00190 * 359.97438 * 8 7 6 10 10 C 1.47017 * 119.99646 * 179.72322 * 8 7 6 11 11 C 1.35967 * 125.13987 * 180.27235 * 10 8 7 12 12 C 1.46198 * 106.07337 * 179.97438 * 11 10 8 13 13 C 1.39730 * 134.19008 * 180.02562 * 12 11 10 14 14 C 1.36625 * 119.70905 * 180.02562 * 13 12 11 15 15 C 1.38838 * 120.43898 * 359.96081 * 14 13 12 16 16 C 1.37830 * 120.75025 * 0.02562 * 15 14 13 17 17 C 1.38989 * 119.85674 * 0.02562 * 16 15 14 18 18 O 1.34747 * 133.22368 * 180.29020 * 17 16 15 19 19 C 1.40106 * 119.83646 * 0.27429 * 5 4 3 20 20 C 1.37612 * 119.99021 * 359.42144 * 19 5 4 21 21 C 1.39094 * 120.16831 * 0.60399 * 20 19 5 22 22 O 1.35592 * 119.91680 * 179.69818 * 21 20 19 23 23 C 1.34730 * 116.99772 * 354.37316 * 22 21 20 24 24 H 1.07993 * 120.00530 * 5.07116 * 23 22 21 25 25 C 1.38747 * 119.99509 * 185.06479 * 23 22 21 26 26 N 1.31495 * 120.00330 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 119.99877 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47261 * 60.00015 * 27 25 23 29 29 H 1.48494 * 109.47309 * 180.02562 * 27 25 23 30 30 H 1.48506 * 109.47128 * 300.00163 * 27 25 23 31 31 H 1.08997 * 109.46662 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46769 * 299.99627 * 1 2 3 33 33 H 1.08998 * 109.46801 * 59.99738 * 1 2 3 34 34 H 1.07997 * 120.08799 * 359.95061 * 4 3 2 35 35 H 1.08001 * 120.00272 * 0.02562 * 6 5 4 36 36 H 1.08001 * 119.99423 * 359.97438 * 7 6 5 37 37 H 1.08006 * 126.96126 * 359.97438 * 11 10 8 38 38 H 1.08002 * 120.14666 * 359.96436 * 13 12 11 39 39 H 1.07997 * 119.77813 * 179.97438 * 14 13 12 40 40 H 1.08004 * 119.62358 * 180.02562 * 15 14 13 41 41 H 1.08002 * 120.06968 * 179.97438 * 16 15 14 42 42 H 1.07998 * 120.00107 * 179.72145 * 19 5 4 43 43 H 1.08001 * 119.91470 * 180.29559 * 20 19 5 44 44 H 0.96991 * 120.00106 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2944 2.3690 0.0005 5 6 1.9337 3.6150 0.0011 6 6 1.1392 4.8500 0.0011 7 6 1.7582 6.0524 0.0011 8 6 0.9673 7.2818 0.0016 9 8 -0.2502 7.2232 0.0016 10 6 1.6403 8.5888 0.0078 11 6 1.0101 9.7936 0.0142 12 6 2.0673 10.8034 0.0192 13 6 2.0795 12.2006 0.0270 14 6 3.2721 12.8673 0.0295 15 6 4.4701 12.1657 0.0254 16 6 4.4797 10.7874 0.0180 17 6 3.2790 10.0872 0.0142 18 8 2.9766 8.7741 0.0122 19 6 3.3332 3.6803 -0.0047 20 6 4.0759 2.5219 0.0011 21 6 3.4409 1.2844 0.0000 22 8 4.1778 0.1462 -0.0004 23 6 5.5131 0.2821 -0.1175 24 1 5.9573 1.2664 -0.1231 25 6 6.3175 -0.8427 -0.2309 26 7 5.7766 -2.0413 -0.2244 27 14 8.1689 -0.6545 -0.3925 28 1 8.7012 0.0484 0.8024 29 1 8.7956 -1.9965 -0.4981 30 1 8.4817 0.1346 -1.6111 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 0.2158 2.3141 0.0001 35 1 0.0604 4.7982 0.0011 36 1 2.8370 6.1042 0.0015 37 1 -0.0556 9.9690 0.0153 38 1 1.1504 12.7512 0.0299 39 1 3.2829 13.9472 0.0351 40 1 5.4053 12.7061 0.0279 41 1 5.4180 10.2528 0.0144 42 1 3.8290 4.6398 -0.0089 43 1 5.1547 2.5737 0.0014 44 1 6.3389 -2.8275 -0.3040 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005129523.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:34 Heat of formation + Delta-G solvation = -19.450913 kcal Electronic energy + Delta-G solvation = -29692.755659 eV Core-core repulsion = 25315.847644 eV Total energy + Delta-G solvation = -4376.908015 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.119 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.68220 -39.80771 -39.19770 -38.10290 -37.75302 -36.62052 -33.23063 -33.00797 -32.35392 -30.79075 -30.15047 -29.76451 -28.73080 -26.77242 -25.81672 -25.01290 -23.10244 -22.75743 -21.89939 -21.67092 -20.66219 -19.15483 -18.28928 -17.93140 -17.66429 -17.26400 -16.51090 -16.35450 -16.11487 -15.57531 -15.25769 -15.07625 -14.73158 -14.64727 -14.37258 -14.18646 -14.04678 -13.94290 -13.67006 -13.54259 -13.47991 -13.23282 -12.59721 -12.50472 -12.31364 -12.18201 -11.87961 -11.76640 -11.53356 -11.32011 -11.14063 -11.07933 -10.84451 -10.79019 -10.58071 -10.49952 -10.08353 -9.66394 -9.49060 -8.99066 -8.91608 -8.55484 -8.04797 -6.98137 -6.69893 -4.18930 0.07468 0.84033 1.02200 1.68027 2.07787 2.33180 2.51985 3.01408 3.03099 3.05965 3.33765 3.37870 3.76429 3.77712 3.89632 4.27447 4.39926 4.54793 4.59444 4.77039 4.82707 4.89638 4.93912 4.98964 5.14940 5.18513 5.26732 5.40828 5.48325 5.50364 5.53201 5.54010 5.68057 5.79107 5.79839 5.89468 5.93853 6.02494 6.06475 6.14334 6.20235 6.36772 6.40756 6.51870 6.75540 6.82682 6.95021 7.01854 7.19530 7.40777 7.46834 7.70787 8.02099 8.72647 9.40775 10.45281 Molecular weight = 364.12amu Principal moments of inertia in cm(-1) A = 0.010548 B = 0.001955 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.992518 B =14318.402411 C =16952.441619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.051 3.949 4 C -0.133 4.133 5 C -0.177 4.177 6 C 0.052 3.948 7 C -0.300 4.300 8 C 0.465 3.535 9 O -0.459 6.459 10 C -0.027 4.027 11 C -0.132 4.132 12 C -0.146 4.146 13 C -0.062 4.062 14 C -0.141 4.141 15 C -0.086 4.086 16 C -0.109 4.109 17 C 0.068 3.932 18 O -0.172 6.172 19 C -0.050 4.050 20 C -0.227 4.227 21 C 0.151 3.849 22 O -0.142 6.142 23 C -0.389 4.389 24 H 0.099 0.901 25 C 0.042 3.958 26 N -0.840 5.840 27 Si 0.946 3.054 28 H -0.266 1.266 29 H -0.275 1.275 30 H -0.266 1.266 31 H 0.092 0.908 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.134 0.866 37 H 0.168 0.832 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.119 0.881 43 H 0.138 0.862 44 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.169 22.360 0.289 22.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.006 3.994 4 C -0.152 4.152 5 C -0.178 4.178 6 C 0.033 3.967 7 C -0.319 4.319 8 C 0.349 3.651 9 O -0.340 6.340 10 C -0.075 4.075 11 C -0.151 4.151 12 C -0.147 4.147 13 C -0.080 4.080 14 C -0.159 4.159 15 C -0.104 4.104 16 C -0.128 4.128 17 C 0.019 3.981 18 O -0.073 6.073 19 C -0.069 4.069 20 C -0.247 4.247 21 C 0.093 3.907 22 O -0.041 6.041 23 C -0.464 4.464 24 H 0.116 0.884 25 C -0.166 4.166 26 N -0.471 5.471 27 Si 0.770 3.230 28 H -0.191 1.191 29 H -0.200 1.200 30 H -0.191 1.191 31 H 0.111 0.889 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.151 0.849 37 H 0.185 0.815 38 H 0.147 0.853 39 H 0.148 0.852 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.137 0.863 43 H 0.156 0.844 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.452 21.347 0.292 22.034 hybrid contribution 0.677 0.432 -0.074 0.806 sum -4.775 21.779 0.219 22.297 Atomic orbital electron populations 1.22923 0.80111 1.03129 1.00427 1.86236 1.19625 1.26154 1.89719 1.18024 0.89338 0.84636 1.07402 1.20885 0.98604 0.90880 1.04867 1.18150 0.92845 0.91312 1.15533 1.22437 0.99126 0.91250 0.83908 1.22901 1.00880 0.91718 1.16431 1.19088 0.87613 0.85695 0.72691 1.90729 1.14735 1.88265 1.40253 1.22812 0.80599 0.97288 1.06814 1.22882 0.99988 0.89808 1.02423 1.19976 0.92603 0.94714 1.07371 1.20376 0.98864 0.91224 0.97577 1.20801 0.92001 1.00334 1.02745 1.21021 0.98793 0.92494 0.98121 1.20046 0.94774 0.93395 1.04565 1.19845 0.95702 0.81279 1.01234 1.84081 1.23493 1.24259 1.75508 1.21008 0.92499 0.97538 0.95838 1.20835 1.00784 0.90682 1.12391 1.18917 0.88269 0.87581 0.95936 1.83965 1.19820 1.26064 1.74298 1.21538 0.78307 0.95199 1.51404 0.88362 1.25459 1.01095 0.94100 0.95931 1.70021 1.36996 0.97919 1.42184 0.85690 0.79475 0.78313 0.79541 1.19121 1.20002 1.19120 0.88924 0.93422 0.93414 0.85770 0.85869 0.84871 0.81492 0.85283 0.85170 0.84563 0.84582 0.86340 0.84408 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.81 101.05 0.99 1.42 16 2 O -0.30 -6.34 10.28 -34.20 -0.35 -6.69 16 3 C 0.05 1.07 6.70 -39.13 -0.26 0.81 16 4 C -0.13 -2.34 8.78 -38.98 -0.34 -2.68 16 5 C -0.18 -3.02 5.87 -105.03 -0.62 -3.63 16 6 C 0.05 0.77 9.46 -37.17 -0.35 0.41 16 7 C -0.30 -4.29 9.21 -37.46 -0.35 -4.64 16 8 C 0.46 6.68 7.06 -32.84 -0.23 6.45 16 9 O -0.46 -7.28 16.72 5.03 0.08 -7.20 16 10 C -0.03 -0.36 6.99 -36.84 -0.26 -0.62 16 11 C -0.13 -1.56 10.81 -37.20 -0.40 -1.96 16 12 C -0.15 -1.63 6.38 -105.19 -0.67 -2.30 16 13 C -0.06 -0.53 10.06 -39.61 -0.40 -0.93 16 14 C -0.14 -0.98 9.98 -39.94 -0.40 -1.38 16 15 C -0.09 -0.61 10.01 -39.51 -0.40 -1.01 16 16 C -0.11 -1.00 10.07 -39.45 -0.40 -1.39 16 17 C 0.07 0.80 7.40 -38.35 -0.28 0.52 16 18 O -0.17 -2.31 10.35 2.80 0.03 -2.28 16 19 C -0.05 -0.89 9.40 -39.11 -0.37 -1.26 16 20 C -0.23 -4.65 9.14 -39.49 -0.36 -5.01 16 21 C 0.15 3.53 6.67 -38.73 -0.26 3.27 16 22 O -0.14 -3.90 9.52 -13.79 -0.13 -4.03 16 23 C -0.39 -10.26 9.48 30.92 0.29 -9.97 16 24 H 0.10 2.34 5.18 -52.49 -0.27 2.06 16 25 C 0.04 1.09 5.50 -17.51 -0.10 0.99 16 26 N -0.84 -23.43 13.67 55.48 0.76 -22.68 16 27 Si 0.95 19.20 29.55 -169.99 -5.02 14.17 16 28 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 29 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 30 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 31 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 33 H 0.05 0.60 7.66 -51.93 -0.40 0.21 16 34 H 0.12 1.80 6.28 -52.49 -0.33 1.47 16 35 H 0.12 1.69 7.52 -52.49 -0.39 1.30 16 36 H 0.13 1.82 5.97 -52.49 -0.31 1.51 16 37 H 0.17 1.67 8.06 -52.48 -0.42 1.25 16 38 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 39 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 40 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 41 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.12 1.77 6.15 -52.49 -0.32 1.45 16 43 H 0.14 2.73 5.62 -52.49 -0.29 2.44 16 44 H 0.28 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 388.98 15.07 5.86 5.86 Total: -1.00 -31.61 388.98 -8.32 -39.93 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -4.39 Total: 5.81 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -5.15 Total: -22.90 kcal Atomic # 7 Polarization: -23.43 SS G_CDS: 0.76 Total: -22.68 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.37 Total: -20.20 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.17 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.61 -8.32 -39.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005129523.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.480 kcal (2) G-P(sol) polarization free energy of solvation -31.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds