Wall clock time and date at job start Tue Mar 31 2020 06:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08991 * 110.41008 * 2 1 4 4 C 1.49731 * 110.56567 * 122.54569 * 2 1 3 5 5 C 1.37800 * 134.29419 * 298.75954 * 4 2 1 6 6 C 1.39356 * 116.98980 * 179.97438 * 5 4 2 7 7 S 1.76206 * 118.76316 * 179.97438 * 6 5 4 8 8 O 1.42104 * 106.39636 * 203.53881 * 7 6 5 9 9 O 1.42099 * 106.40191 * 336.45532 * 7 6 5 10 10 N 1.65601 * 107.21848 * 90.00156 * 7 6 5 11 11 C 1.46497 * 119.99965 * 89.99727 * 10 7 6 12 12 C 1.46497 * 119.99569 * 269.99420 * 10 7 6 13 13 C 1.50708 * 109.46805 * 95.00361 * 12 10 7 14 14 H 1.07998 * 119.99852 * 359.97438 * 13 12 10 15 15 C 1.37870 * 119.99805 * 179.97438 * 13 12 10 16 16 N 1.31509 * 120.00271 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99876 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46837 * 90.00155 * 17 15 13 19 19 H 1.48502 * 109.47012 * 210.00131 * 17 15 13 20 20 H 1.48494 * 109.47012 * 330.00116 * 17 15 13 21 21 C 1.38717 * 122.46936 * 359.92076 * 6 5 4 22 22 C 1.37428 * 120.69850 * 0.11310 * 21 6 5 23 23 C 1.38740 * 105.34095 * 118.76255 * 4 2 1 24 24 N 1.39192 * 112.19449 * 0.11777 * 23 4 2 25 25 C 1.47365 * 120.20798 * 179.74953 * 24 23 4 26 26 C 1.53308 * 108.37747 * 332.74321 * 25 24 23 27 27 C 1.50037 * 126.01166 * 180.13451 * 22 21 6 28 28 C 1.34131 * 110.49978 * 359.79754 * 24 23 4 29 29 O 1.21280 * 126.18997 * 180.20922 * 28 24 23 30 30 H 1.09006 * 109.46965 * 181.02291 * 1 2 3 31 31 H 1.09003 * 109.46998 * 301.01416 * 1 2 3 32 32 H 1.08989 * 109.46845 * 61.02007 * 1 2 3 33 33 H 1.07996 * 121.50518 * 359.91258 * 5 4 2 34 34 H 1.09001 * 109.47081 * 89.99754 * 11 10 7 35 35 H 1.08997 * 109.46807 * 209.99766 * 11 10 7 36 36 H 1.09000 * 109.47272 * 329.99753 * 11 10 7 37 37 H 1.08996 * 109.47336 * 214.99657 * 12 10 7 38 38 H 1.08996 * 109.47655 * 335.00590 * 12 10 7 39 39 H 0.96999 * 120.00130 * 179.97438 * 16 15 13 40 40 H 1.07993 * 119.64907 * 180.02562 * 21 6 5 41 41 H 1.09003 * 109.68087 * 213.02235 * 25 24 23 42 42 H 1.08997 * 109.71416 * 92.48686 * 25 24 23 43 43 H 1.09002 * 109.01380 * 295.32192 * 26 25 24 44 44 H 1.08999 * 109.01231 * 176.52765 * 26 25 24 45 45 H 1.08994 * 109.44068 * 88.26103 * 27 22 21 46 46 H 1.09008 * 109.43603 * 328.38717 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9101 1.0215 0.0000 4 6 2.0560 -0.7542 1.1817 5 6 1.9497 -0.5997 2.5469 6 6 2.6034 -1.5388 3.3424 7 16 2.4990 -1.3853 5.0947 8 8 3.6317 -2.0602 5.6247 9 8 2.2131 -0.0192 5.3615 10 7 1.1710 -2.2453 5.5839 11 6 1.3038 -3.6617 5.9338 12 6 -0.1364 -1.5897 5.6667 13 6 -0.8996 -1.8280 4.3892 14 1 -0.4550 -2.4093 3.5950 15 6 -2.1654 -1.3039 4.2344 16 7 -2.7066 -0.5956 5.2013 17 14 -3.1112 -1.5987 2.6507 18 1 -3.9114 -2.8433 2.7764 19 1 -4.0179 -0.4508 2.3947 20 1 -2.1560 -1.7362 1.5221 21 6 3.3322 -2.5904 2.8067 22 6 3.4409 -2.7472 1.4457 23 6 2.7877 -1.8061 0.6498 24 7 2.7842 -1.7982 -0.7421 25 6 3.5136 -2.8366 -1.4913 26 6 4.6749 -3.3337 -0.6225 27 6 4.1929 -3.8373 0.7405 28 6 2.0625 -0.7663 -1.2041 29 8 1.8685 -0.4931 -2.3697 30 1 -0.3633 -1.0276 0.0183 31 1 -0.3633 0.5295 0.8808 32 1 -0.3632 0.4979 -0.8989 33 1 1.3862 0.2130 2.9807 34 1 1.5284 -3.7539 6.9964 35 1 0.3702 -4.1793 5.7135 36 1 2.1115 -4.1056 5.3519 37 1 -0.6965 -2.0007 6.5065 38 1 0.0028 -0.5185 5.8122 39 1 -3.5970 -0.2266 5.0923 40 1 3.8206 -3.2926 3.4661 41 1 3.9028 -2.4154 -2.4183 42 1 2.8434 -3.6658 -1.7178 43 1 5.3787 -2.5157 -0.4685 44 1 5.1844 -4.1455 -1.1415 45 1 3.5373 -4.6962 0.5973 46 1 5.0516 -4.1338 1.3430 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005153953.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:22 Heat of formation + Delta-G solvation = -71.866051 kcal Electronic energy + Delta-G solvation = -32360.162918 eV Core-core repulsion = 28148.718715 eV Total energy + Delta-G solvation = -4211.444203 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 364.129 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.08062 -38.63873 -36.76822 -36.63953 -35.69033 -35.52895 -35.24958 -32.52895 -32.35331 -30.95012 -29.21032 -27.82945 -26.51682 -25.12546 -25.04958 -23.74984 -22.32095 -21.61443 -21.09745 -19.64220 -18.28825 -17.33222 -17.23256 -16.78697 -16.70228 -16.29235 -16.20716 -15.55814 -15.29101 -14.82719 -14.50501 -14.30699 -14.15575 -13.89592 -13.71062 -13.50128 -13.32022 -13.19195 -13.03189 -12.64507 -12.41840 -12.34500 -12.20888 -12.13972 -11.78349 -11.72916 -11.55755 -11.49142 -11.40505 -11.21140 -11.12996 -10.86327 -10.78391 -10.65309 -10.53119 -10.48568 -10.10544 -9.99692 -9.80461 -8.75141 -8.54357 -8.20891 -8.01389 -6.15303 -4.21950 0.74695 1.11204 1.29773 2.27234 2.48231 3.20328 3.29323 3.29616 3.37587 3.72853 3.96438 4.11884 4.32225 4.33220 4.42909 4.49228 4.54483 4.77944 4.83441 4.91865 5.11366 5.12280 5.19244 5.21826 5.26133 5.27308 5.30140 5.49115 5.54792 5.64415 5.74013 5.75775 5.82756 5.90843 5.99351 6.04459 6.06576 6.20538 6.24021 6.26005 6.42626 6.52598 6.66339 6.92374 7.27895 7.37636 7.56747 7.71378 7.81581 8.10144 8.83472 9.44584 10.92549 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.008813 B = 0.005186 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3176.540389 B = 5397.703701 C = 7391.939389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.075 4.075 3 H 0.126 0.874 4 C -0.155 4.155 5 C 0.064 3.936 6 C -0.687 4.687 7 S 2.692 3.308 8 O -0.979 6.979 9 O -0.957 6.957 10 N -0.986 5.986 11 C 0.104 3.896 12 C 0.242 3.758 13 C -0.540 4.540 14 H 0.062 0.938 15 C 0.068 3.932 16 N -0.888 5.888 17 Si 0.884 3.116 18 H -0.281 1.281 19 H -0.284 1.284 20 H -0.269 1.269 21 C 0.013 3.987 22 C -0.133 4.133 23 C 0.179 3.821 24 N -0.555 5.555 25 C 0.115 3.885 26 C -0.133 4.133 27 C -0.072 4.072 28 C 0.532 3.468 29 O -0.504 6.504 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.159 0.841 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.042 0.958 38 H 0.055 0.945 39 H 0.265 0.735 40 H 0.142 0.858 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.081 0.919 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.471 -5.782 -8.710 16.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.096 4.096 3 H 0.144 0.856 4 C -0.159 4.159 5 C 0.044 3.956 6 C -0.774 4.774 7 S 2.782 3.218 8 O -0.970 6.970 9 O -0.947 6.947 10 N -0.826 5.826 11 C -0.042 4.042 12 C 0.120 3.880 13 C -0.580 4.580 14 H 0.080 0.920 15 C -0.135 4.135 16 N -0.526 5.526 17 Si 0.711 3.289 18 H -0.207 1.207 19 H -0.210 1.210 20 H -0.194 1.194 21 C -0.007 4.007 22 C -0.137 4.137 23 C 0.081 3.919 24 N -0.277 5.277 25 C -0.005 4.005 26 C -0.171 4.171 27 C -0.109 4.109 28 C 0.321 3.679 29 O -0.378 6.378 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.177 0.823 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.159 0.841 41 H 0.109 0.891 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.108 0.892 45 H 0.099 0.901 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.775 -5.118 -9.004 16.446 hybrid contribution -0.989 -0.575 -1.732 2.076 sum 11.786 -5.692 -10.736 16.929 Atomic orbital electron populations 1.21671 0.89949 1.03708 1.03736 1.20548 0.99142 1.00430 0.89437 0.85618 1.19405 1.03702 0.98382 0.94413 1.20433 0.89891 0.95027 0.90207 1.31153 1.12531 1.05405 1.28298 1.01868 0.72668 0.73645 0.73669 1.93506 1.49937 1.75954 1.77563 1.93551 1.84689 1.32703 1.83798 1.57298 1.25256 1.20072 1.79963 1.21277 1.02141 0.81475 0.99343 1.19299 0.76962 0.93877 0.97867 1.21544 1.00765 1.34000 1.01655 0.91959 1.24893 0.97343 0.94837 0.96433 1.69919 1.16189 1.34297 1.32177 0.86732 0.80177 0.77973 0.83998 1.20714 1.20971 1.19367 1.20258 0.92550 0.94016 0.93861 1.19174 1.03438 0.98185 0.92880 1.18713 0.94955 0.95260 0.82924 1.46322 1.48096 1.27537 1.05750 1.21920 0.93673 0.89781 0.95165 1.21815 0.97252 1.02203 0.95822 1.20211 0.99867 0.95972 0.94818 1.21058 0.76883 0.79799 0.90138 1.90733 1.58739 1.69773 1.18520 0.91801 0.89823 0.91255 0.82343 0.93390 0.90643 0.92746 0.94040 0.92750 0.92536 0.84075 0.89097 0.90409 0.90856 0.89213 0.90079 0.89471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 9.29 37.16 0.35 -1.60 16 2 C -0.07 -1.06 3.56 -92.57 -0.33 -1.39 16 3 H 0.13 1.52 8.14 -51.93 -0.42 1.09 16 4 C -0.16 -2.42 5.70 -105.06 -0.60 -3.02 16 5 C 0.06 1.09 9.64 -39.33 -0.38 0.71 16 6 C -0.69 -11.58 6.00 -38.99 -0.23 -11.81 16 7 S 2.69 50.66 5.62 -107.50 -0.60 50.06 16 8 O -0.98 -18.52 16.23 -57.17 -0.93 -19.45 16 9 O -0.96 -20.64 15.78 -57.17 -0.90 -21.54 16 10 N -0.99 -19.23 3.17 -123.06 -0.39 -19.62 16 11 C 0.10 1.66 10.31 59.85 0.62 2.28 16 12 C 0.24 5.67 5.41 -5.19 -0.03 5.64 16 13 C -0.54 -13.41 9.38 -34.44 -0.32 -13.73 16 14 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 15 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.89 -24.35 13.29 55.43 0.74 -23.61 16 17 Si 0.88 19.97 29.54 -169.99 -5.02 14.95 16 18 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 21 C 0.01 0.19 9.34 -39.70 -0.37 -0.18 16 22 C -0.13 -1.74 5.79 -104.77 -0.61 -2.35 16 23 C 0.18 2.59 6.26 -83.87 -0.52 2.07 16 24 N -0.56 -7.48 3.14 -112.22 -0.35 -7.83 16 25 C 0.11 1.13 7.05 -3.41 -0.02 1.10 16 26 C -0.13 -1.04 5.82 -26.52 -0.15 -1.19 16 27 C -0.07 -0.65 6.09 -28.15 -0.17 -0.82 16 28 C 0.53 8.00 7.71 -10.46 -0.08 7.92 16 29 O -0.50 -8.63 17.98 5.56 0.10 -8.53 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.07 0.91 8.14 -51.94 -0.42 0.49 16 33 H 0.16 2.73 7.63 -52.49 -0.40 2.33 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 36 H 0.05 0.73 7.79 -51.93 -0.40 0.33 16 37 H 0.04 1.01 8.11 -51.93 -0.42 0.59 16 38 H 0.05 1.39 6.91 -51.93 -0.36 1.03 16 39 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.14 1.75 7.50 -52.49 -0.39 1.36 16 41 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.09 0.65 8.14 -51.92 -0.42 0.22 16 LS Contribution 390.57 15.07 5.89 5.89 Total: -1.00 -32.12 390.57 -11.03 -43.14 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.59 Total: 1.26 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: -2.96 Total: -14.72 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: -0.01 Total: -51.06 kcal Atomic # 8 Polarization: -47.80 SS G_CDS: -1.73 Total: -49.53 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 16 Polarization: 50.66 SS G_CDS: -0.60 Total: 50.06 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.12 -11.03 -43.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005153953.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.722 kcal (2) G-P(sol) polarization free energy of solvation -32.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds