Wall clock time and date at job start Tue Mar 31 2020 06:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86793 * 120.00101 * 2 1 4 4 H 1.48505 * 109.47411 * 270.00172 * 3 2 1 5 5 H 1.48501 * 109.47143 * 29.99986 * 3 2 1 6 6 H 1.48504 * 109.47342 * 150.00062 * 3 2 1 7 7 C 1.38891 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99900 * 163.62079 * 7 2 1 9 9 N 1.37143 * 119.99960 * 343.62911 * 7 2 1 10 10 C 1.34779 * 119.99819 * 164.74325 * 9 7 2 11 11 O 1.21277 * 119.99489 * 174.95041 * 10 9 7 12 12 C 1.50695 * 120.00312 * 354.94472 * 10 9 7 13 13 O 1.45191 * 109.47398 * 180.02562 * 12 10 9 14 14 C 1.34842 * 117.00459 * 180.02562 * 13 12 10 15 15 O 1.21572 * 120.00147 * 359.97438 * 14 13 12 16 16 C 1.46896 * 120.00524 * 179.97438 * 14 13 12 17 17 C 1.35945 * 125.44463 * 180.02562 * 16 14 13 18 18 C 1.41548 * 107.72428 * 179.97438 * 17 16 14 19 19 C 1.40126 * 133.36667 * 179.97438 * 18 17 16 20 20 C 1.36427 * 119.83108 * 180.02562 * 19 18 17 21 21 C 1.38948 * 120.61590 * 359.97019 * 20 19 18 22 22 C 1.37669 * 120.65411 * 0.05292 * 21 20 19 23 23 C 1.39229 * 119.81244 * 359.96644 * 22 21 20 24 24 N 1.37463 * 133.17285 * 180.02562 * 23 22 21 25 25 H 0.97002 * 125.61097 * 359.97438 * 24 23 22 26 26 C 1.39784 * 119.99823 * 344.73053 * 9 7 2 27 27 C 1.38955 * 120.08272 * 281.21405 * 26 9 7 28 28 C 1.38084 * 119.92720 * 179.79040 * 27 26 9 29 29 C 1.38314 * 120.07085 * 0.46530 * 28 27 26 30 30 C 1.38305 * 120.16004 * 359.79212 * 29 28 27 31 31 C 1.38087 * 120.07568 * 359.97143 * 30 29 28 32 32 H 0.97000 * 120.00417 * 5.02001 * 1 2 3 33 33 H 1.09004 * 109.46830 * 60.00313 * 12 10 9 34 34 H 1.09005 * 109.46936 * 300.00386 * 12 10 9 35 35 H 1.07998 * 126.13905 * 359.93292 * 17 16 14 36 36 H 1.08001 * 120.08023 * 0.06107 * 19 18 17 37 37 H 1.08002 * 119.69283 * 180.02562 * 20 19 18 38 38 H 1.08001 * 119.67389 * 180.02562 * 21 20 19 39 39 H 1.08000 * 120.09011 * 180.23442 * 22 21 20 40 40 H 1.08003 * 120.04183 * 0.02562 * 27 26 9 41 41 H 1.08000 * 119.96646 * 180.25475 * 28 27 26 42 42 H 1.08006 * 119.91700 * 179.76554 * 29 28 27 43 43 H 1.07997 * 119.96261 * 180.02562 * 30 29 28 44 44 H 1.07998 * 120.03916 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5458 1.4401 0.7000 7 6 2.0086 -1.2028 -0.0005 8 1 3.0558 -1.2217 -0.2643 9 7 1.3646 -2.3666 0.3337 10 6 1.9287 -3.5560 0.0443 11 8 1.4047 -4.5830 0.4203 12 6 3.2102 -3.6096 -0.7467 13 8 3.6108 -4.9936 -0.9259 14 6 4.7465 -5.2176 -1.6175 15 8 5.3841 -4.2814 -2.0590 16 6 5.2135 -6.5929 -1.8374 17 6 6.3382 -6.9447 -2.5152 18 6 6.4271 -8.3573 -2.4988 19 6 7.3516 -9.2694 -3.0250 20 6 7.1638 -10.6081 -2.8417 21 6 6.0628 -11.0782 -2.1364 22 6 5.1402 -10.2024 -1.6101 23 6 5.3096 -8.8314 -1.7840 24 7 4.5800 -7.7358 -1.3877 25 1 3.7559 -7.7608 -0.8767 26 6 0.1233 -2.3192 0.9748 27 6 0.0531 -2.0604 2.3382 28 6 -1.1751 -2.0100 2.9674 29 6 -2.3339 -2.2262 2.2439 30 6 -2.2674 -2.4893 0.8877 31 6 -1.0429 -2.5364 0.2511 32 1 -0.4851 0.8368 -0.0735 33 1 3.9914 -3.0715 -0.2097 34 1 3.0550 -3.1475 -1.7217 35 1 7.0379 -6.2679 -2.9828 36 1 8.2110 -8.9133 -3.5738 37 1 7.8780 -11.3091 -3.2479 38 1 5.9293 -12.1412 -2.0000 39 1 4.2898 -10.5775 -1.0601 40 1 0.9577 -1.8951 2.9045 41 1 -1.2307 -1.8049 4.0263 42 1 -3.2929 -2.1900 2.7393 43 1 -3.1742 -2.6573 0.3258 44 1 -0.9917 -2.7423 -0.8078 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005492255.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:39 Heat of formation + Delta-G solvation = -13.045939 kcal Electronic energy + Delta-G solvation = -30857.682209 eV Core-core repulsion = 26513.344686 eV Total energy + Delta-G solvation = -4344.337523 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.126 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.73613 -40.10860 -39.32467 -37.43968 -36.99430 -36.11666 -34.84709 -32.37881 -31.83771 -30.20034 -29.96520 -29.56489 -29.21013 -27.53811 -25.11551 -24.46744 -22.34161 -21.91714 -21.60919 -21.37540 -20.28962 -19.47884 -18.51486 -18.06332 -17.52237 -16.47328 -16.40565 -16.18194 -15.83773 -15.55473 -14.95781 -14.78490 -14.64645 -14.46835 -14.33202 -14.14214 -13.86396 -13.58706 -13.53836 -13.17569 -12.93436 -12.52720 -12.34888 -12.26828 -11.98344 -11.80177 -11.69397 -11.58619 -11.23056 -11.15895 -11.05210 -10.72264 -10.61509 -10.50582 -10.42827 -10.32593 -10.12971 -9.54849 -8.79101 -8.49269 -8.28744 -8.01730 -7.94701 -7.67503 -6.39118 -4.18980 0.49329 1.40450 1.81820 2.33015 2.42818 2.51291 2.86898 2.99896 3.05354 3.12751 3.15051 3.50542 3.67642 3.91430 4.33580 4.47544 4.75204 4.77967 4.84250 4.91359 4.94087 5.09222 5.16872 5.28399 5.46103 5.58154 5.67690 5.71357 5.73239 5.78955 5.79897 5.84291 5.94724 6.20027 6.31363 6.33343 6.38541 6.43124 6.46887 6.48636 6.70736 6.84777 6.96291 7.16023 7.23677 7.25008 7.37839 7.47988 7.65200 7.74726 7.86544 8.26531 8.82076 9.13648 9.56045 10.45290 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.014109 B = 0.002227 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.078954 B =12572.587768 C =14210.020663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.050 3.950 3 Si 0.922 3.078 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.366 4.366 8 H 0.104 0.896 9 N -0.403 5.403 10 C 0.462 3.538 11 O -0.579 6.579 12 C 0.075 3.925 13 O -0.334 6.334 14 C 0.526 3.474 15 O -0.491 6.491 16 C 0.043 3.957 17 C -0.103 4.103 18 C -0.124 4.124 19 C -0.058 4.058 20 C -0.152 4.152 21 C -0.088 4.088 22 C -0.131 4.131 23 C 0.116 3.884 24 N -0.563 5.563 25 H 0.430 0.570 26 C 0.236 3.764 27 C -0.120 4.120 28 C -0.123 4.123 29 C -0.143 4.143 30 C -0.121 4.121 31 C -0.066 4.066 32 H 0.275 0.725 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.160 0.840 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.107 0.893 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.751 -13.418 -2.929 15.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.159 4.159 3 Si 0.747 3.253 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.491 4.491 8 H 0.122 0.878 9 N -0.121 5.121 10 C 0.251 3.749 11 O -0.463 6.463 12 C -0.002 4.002 13 O -0.249 6.249 14 C 0.370 3.630 15 O -0.379 6.379 16 C -0.065 4.065 17 C -0.129 4.129 18 C -0.128 4.128 19 C -0.077 4.077 20 C -0.171 4.171 21 C -0.108 4.108 22 C -0.151 4.151 23 C 0.005 3.995 24 N -0.167 5.167 25 H 0.270 0.730 26 C 0.146 3.854 27 C -0.140 4.140 28 C -0.141 4.141 29 C -0.161 4.161 30 C -0.140 4.140 31 C -0.085 4.085 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.118 0.882 35 H 0.177 0.823 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.330 -13.354 -2.709 15.472 hybrid contribution -0.044 1.442 0.128 1.448 sum 7.285 -11.912 -2.581 14.200 Atomic orbital electron populations 1.69931 1.05843 1.28296 1.43448 1.25282 0.95481 0.99871 0.95299 0.86001 0.79561 0.80962 0.78748 1.20004 1.20498 1.19128 1.19634 0.95404 0.83275 1.50790 0.87799 1.41173 1.16332 1.04956 1.49609 1.19436 0.87036 0.83688 0.84726 1.90607 1.65547 1.33213 1.56958 1.22711 0.97175 0.77825 1.02454 1.86543 1.39193 1.32192 1.67017 1.19964 0.79304 0.87780 0.75984 1.90910 1.56089 1.43093 1.47805 1.19099 0.97052 0.83957 1.06418 1.20907 0.96761 0.93929 1.01301 1.18162 0.97228 0.93100 1.04312 1.20399 0.97424 0.92272 0.97595 1.20633 0.99037 0.95297 1.02155 1.20891 0.93785 0.99150 0.96933 1.20127 1.01610 0.89013 1.04374 1.18398 0.93098 0.88810 0.99223 1.42063 1.23861 1.03441 1.47323 0.72977 1.17047 0.84758 0.93635 0.89965 1.20973 0.97209 1.01768 0.94065 1.20671 0.92489 1.02325 0.98652 1.20764 0.97216 1.03637 0.94516 1.20690 0.96626 1.02120 0.94565 1.20800 0.91603 0.97633 0.98454 0.91411 0.88740 0.88234 0.82284 0.85661 0.85868 0.85531 0.85739 0.87405 0.87488 0.87659 0.87465 0.87647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.94 10.34 55.49 0.57 -20.36 16 2 C 0.05 1.19 5.24 -17.49 -0.09 1.10 16 3 Si 0.92 18.81 29.59 -169.99 -5.03 13.78 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.37 -8.80 9.19 -14.93 -0.14 -8.93 16 8 H 0.10 2.33 6.46 -52.49 -0.34 1.99 16 9 N -0.40 -9.85 2.66 -58.98 -0.16 -10.01 16 10 C 0.46 10.91 7.66 -10.99 -0.08 10.83 16 11 O -0.58 -14.97 16.48 -14.10 -0.23 -15.20 16 12 C 0.07 1.49 4.50 36.00 0.16 1.65 16 13 O -0.33 -6.26 9.76 -47.57 -0.46 -6.73 16 14 C 0.53 8.87 7.94 34.23 0.27 9.14 16 15 O -0.49 -9.01 16.63 -19.32 -0.32 -9.33 16 16 C 0.04 0.62 6.99 -82.32 -0.58 0.04 16 17 C -0.10 -1.30 10.53 -39.14 -0.41 -1.72 16 18 C -0.12 -1.46 6.16 -106.93 -0.66 -2.12 16 19 C -0.06 -0.55 10.06 -39.53 -0.40 -0.94 16 20 C -0.15 -1.24 9.96 -39.97 -0.40 -1.64 16 21 C -0.09 -0.72 10.01 -39.53 -0.40 -1.11 16 22 C -0.13 -1.26 10.08 -39.42 -0.40 -1.65 16 23 C 0.12 1.38 7.25 -83.97 -0.61 0.77 16 24 N -0.56 -7.18 6.19 -7.37 -0.05 -7.22 16 25 H 0.43 5.07 8.96 -40.82 -0.37 4.70 16 26 C 0.24 5.72 2.29 -83.70 -0.19 5.53 16 27 C -0.12 -2.72 9.95 -39.37 -0.39 -3.11 16 28 C -0.12 -2.42 10.04 -39.61 -0.40 -2.81 16 29 C -0.14 -2.69 10.04 -39.53 -0.40 -3.09 16 30 C -0.12 -2.43 10.04 -39.61 -0.40 -2.83 16 31 C -0.07 -1.51 8.66 -39.37 -0.34 -1.85 16 32 H 0.27 6.58 8.32 -40.82 -0.34 6.24 16 33 H 0.09 1.78 7.52 -51.93 -0.39 1.39 16 34 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 35 H 0.16 1.77 8.06 -52.49 -0.42 1.34 16 36 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 38 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 39 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.11 2.37 8.06 -52.48 -0.42 1.95 16 41 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 42 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 43 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 44 H 0.11 2.47 8.06 -52.49 -0.42 2.05 16 LS Contribution 389.55 15.07 5.87 5.87 Total: -1.00 -30.23 389.55 -10.53 -40.76 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -4.88 Total: 11.20 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -5.84 Total: -2.76 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.37 Total: -37.59 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -1.02 Total: -31.26 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.23 -10.53 -40.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005492255.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.716 kcal (2) G-P(sol) polarization free energy of solvation -30.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds