Wall clock time and date at job start Tue Mar 31 2020 05:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99808 * 2 1 4 4 H 1.48501 * 109.47029 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47043 * 299.99939 * 3 2 1 6 6 H 1.48498 * 109.47207 * 60.00004 * 3 2 1 7 7 C 1.37875 * 120.00457 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00439 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99854 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47355 * 180.02562 * 9 7 2 11 11 C 1.34780 * 120.00081 * 89.99466 * 10 9 7 12 12 O 1.21286 * 119.99930 * 5.22483 * 11 10 9 13 13 C 1.50696 * 119.99678 * 185.21812 * 11 10 9 14 14 O 1.42907 * 109.46908 * 185.13541 * 13 11 10 15 15 C 1.35275 * 116.99898 * 180.02562 * 14 13 11 16 16 N 1.32425 * 120.89366 * 359.97336 * 15 14 13 17 17 C 1.32387 * 121.51868 * 180.02562 * 16 15 14 18 18 N 1.31177 * 122.94947 * 0.02562 * 17 16 15 19 19 C 1.34052 * 120.41021 * 359.97438 * 18 17 16 20 20 C 1.40193 * 122.01127 * 180.02562 * 19 18 17 21 21 C 1.36289 * 119.58115 * 179.97438 * 20 19 18 22 22 C 1.39239 * 121.04834 * 0.02562 * 21 20 19 23 23 C 1.36338 * 120.91608 * 359.97438 * 22 21 20 24 24 C 1.40017 * 119.49372 * 359.97438 * 23 22 21 25 25 C 1.39927 * 119.99923 * 269.99945 * 10 9 7 26 26 C 1.38875 * 120.07206 * 112.47048 * 25 10 9 27 27 C 1.38106 * 119.93124 * 179.74995 * 26 25 10 28 28 C 1.38292 * 120.06553 * 0.52665 * 27 26 25 29 29 C 1.38272 * 120.14440 * 359.74938 * 28 27 26 30 30 C 1.38112 * 120.07073 * 359.97371 * 29 28 27 31 31 H 0.97000 * 120.00053 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.47085 * 59.99401 * 9 7 2 33 33 H 1.09000 * 109.46486 * 300.00138 * 9 7 2 34 34 H 1.09003 * 109.47397 * 65.14032 * 13 11 10 35 35 H 1.08998 * 109.47925 * 305.13765 * 13 11 10 36 36 H 1.08002 * 118.52619 * 179.97438 * 17 16 15 37 37 H 1.07994 * 120.20738 * 0.24875 * 20 19 18 38 38 H 1.08001 * 119.47169 * 179.97438 * 21 20 19 39 39 H 1.08002 * 119.54448 * 179.97438 * 22 21 20 40 40 H 1.08007 * 120.25370 * 179.97438 * 23 22 21 41 41 H 1.08007 * 120.03302 * 0.02562 * 26 25 10 42 42 H 1.07999 * 119.97028 * 180.27515 * 27 26 25 43 43 H 1.07998 * 119.92123 * 179.72472 * 28 27 26 44 44 H 1.07999 * 119.96667 * 180.02562 * 29 28 27 45 45 H 1.08003 * 120.03907 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0017 10 7 2.2031 -3.6126 -0.0015 11 6 2.6403 -4.1253 1.1659 12 8 2.1752 -3.7298 2.2139 13 6 3.7067 -5.1900 1.1688 14 8 3.9130 -5.6539 2.5047 15 6 4.8452 -6.6178 2.6830 16 7 5.5283 -7.1012 1.6567 17 6 6.4430 -8.0448 1.8169 18 7 6.7359 -8.5634 2.9857 19 6 6.1032 -8.1456 4.0912 20 6 6.3899 -8.6761 5.3569 21 6 5.7166 -8.2143 6.4482 22 6 4.7464 -7.2229 6.3270 23 6 4.4426 -6.6850 5.1116 24 6 5.1164 -7.1362 3.9702 25 6 2.6587 -4.1439 -1.2132 26 6 3.9877 -3.9888 -1.5851 27 6 4.4355 -4.5188 -2.7792 28 6 3.5593 -5.1939 -3.6094 29 6 2.2342 -5.3450 -3.2447 30 6 1.7815 -4.8223 -2.0491 31 1 -0.4850 0.8400 0.0004 32 1 0.6248 -2.5563 -0.8919 33 1 0.6242 -2.5574 0.8880 34 1 4.6366 -4.7740 0.7811 35 1 3.3911 -6.0224 0.5399 36 1 6.9712 -8.4043 0.9462 37 1 7.1426 -9.4426 5.4670 38 1 5.9385 -8.6245 7.4223 39 1 4.2274 -6.8751 7.2079 40 1 3.6878 -5.9168 5.0298 41 1 4.6715 -3.4582 -0.9390 42 1 5.4699 -4.4024 -3.0670 43 1 3.9110 -5.6035 -4.5448 44 1 1.5525 -5.8731 -3.8950 45 1 0.7462 -4.9403 -1.7649 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005505821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:23 Heat of formation + Delta-G solvation = 36.708552 kcal Electronic energy + Delta-G solvation = -31338.733302 eV Core-core repulsion = 27094.271958 eV Total energy + Delta-G solvation = -4244.461345 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.137 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.65091 -40.17470 -38.97292 -38.01561 -37.60237 -34.98164 -33.52730 -32.79223 -31.77859 -30.81427 -30.37484 -29.55406 -28.95086 -26.73971 -24.90963 -24.37651 -23.05061 -22.59936 -22.24151 -22.11427 -19.44142 -19.22609 -18.55260 -17.86428 -17.07026 -16.76009 -16.48466 -16.09022 -15.88143 -15.39093 -15.29305 -15.10608 -14.61095 -14.56854 -14.34588 -14.23327 -14.09178 -13.64848 -13.35833 -13.21984 -12.88939 -12.62471 -12.50278 -12.39965 -12.33007 -11.91830 -11.72312 -11.54411 -11.29039 -11.07874 -10.89846 -10.86657 -10.72305 -10.34970 -10.25105 -9.81879 -9.53677 -9.51522 -9.51124 -8.75591 -8.67479 -8.51433 -8.40505 -7.81837 -6.13703 -4.18862 0.12063 0.47810 1.47699 1.58125 1.68146 2.32518 2.76833 3.01139 3.25368 3.32896 3.36773 3.65287 3.86156 3.87564 3.94396 3.95763 4.36956 4.40641 4.44596 4.64001 4.70050 4.93862 5.07236 5.09060 5.12116 5.13370 5.21349 5.21906 5.25471 5.30864 5.60964 5.61533 5.65262 5.75178 5.91221 5.92675 5.99586 6.15314 6.19204 6.43890 6.52462 6.66931 6.67993 6.70332 6.83142 6.95568 7.11168 7.22575 7.34287 7.81220 7.92921 8.08015 8.13084 8.63898 8.85333 9.46109 10.94707 Molecular weight = 363.14amu Principal moments of inertia in cm(-1) A = 0.009665 B = 0.002900 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2896.219035 B = 9652.709737 C =11603.059248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.064 3.936 3 Si 0.900 3.100 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.248 3.752 10 N -0.553 5.553 11 C 0.516 3.484 12 O -0.508 6.508 13 C 0.051 3.949 14 O -0.265 6.265 15 C 0.413 3.587 16 N -0.591 5.591 17 C 0.343 3.657 18 N -0.538 5.538 19 C 0.184 3.816 20 C -0.117 4.117 21 C -0.069 4.069 22 C -0.139 4.139 23 C -0.049 4.049 24 C -0.169 4.169 25 C 0.152 3.848 26 C -0.125 4.125 27 C -0.106 4.106 28 C -0.131 4.131 29 C -0.109 4.109 30 C -0.122 4.122 31 H 0.264 0.736 32 H 0.039 0.961 33 H 0.051 0.949 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.199 0.801 37 H 0.141 0.859 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.144 0.856 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.122 0.878 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.198 -18.156 2.579 21.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.568 4.568 8 H 0.077 0.923 9 C 0.131 3.869 10 N -0.283 5.283 11 C 0.302 3.698 12 O -0.382 6.382 13 C -0.028 4.028 14 O -0.164 6.164 15 C 0.215 3.785 16 N -0.326 5.326 17 C 0.054 3.946 18 N -0.257 5.257 19 C 0.058 3.942 20 C -0.136 4.136 21 C -0.089 4.089 22 C -0.157 4.157 23 C -0.069 4.069 24 C -0.174 4.174 25 C 0.061 3.939 26 C -0.144 4.144 27 C -0.125 4.125 28 C -0.149 4.149 29 C -0.127 4.127 30 C -0.141 4.141 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.120 0.880 35 H 0.116 0.884 36 H 0.215 0.785 37 H 0.158 0.842 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.162 0.838 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.060 -17.992 2.661 21.286 hybrid contribution 0.049 1.443 0.186 1.456 sum 11.108 -16.549 2.847 20.134 Atomic orbital electron populations 1.69933 1.05988 1.27134 1.50021 1.24908 0.94906 0.99251 0.94819 0.86412 0.80002 0.83178 0.77692 1.19736 1.20843 1.20756 1.21387 0.93435 0.90340 1.51684 0.92255 1.19522 0.87021 0.81167 0.99145 1.45849 1.45822 1.34703 1.01888 1.19721 0.83014 0.82605 0.84445 1.90731 1.56663 1.60434 1.30358 1.22736 1.00560 0.98218 0.81256 1.86232 1.50764 1.48294 1.31158 1.20405 0.84494 0.84349 0.89252 1.68144 1.13123 1.17822 1.33464 1.24602 0.88679 0.86275 0.95021 1.68793 1.28543 1.29722 0.98685 1.18813 0.90431 0.91098 0.93832 1.20659 1.01687 1.01567 0.89656 1.21092 0.94034 0.94935 0.98884 1.20990 0.98940 0.97802 0.97938 1.21106 0.97129 0.97689 0.91025 1.18701 1.03257 1.02536 0.92954 1.17789 0.92692 0.95200 0.88255 1.21368 0.95602 0.99983 0.97468 1.20970 0.99620 0.97899 0.93995 1.21087 0.93723 1.00422 0.99676 1.20977 0.95831 0.99870 0.96056 1.21296 1.00064 0.97754 0.95018 0.92598 0.94265 0.93099 0.87996 0.88418 0.78461 0.84152 0.84857 0.84890 0.83774 0.85913 0.85975 0.86254 0.85969 0.85655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.53 -14.74 9.39 -34.44 -0.32 -15.07 16 8 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 9 C 0.25 6.36 5.15 -5.19 -0.03 6.33 16 10 N -0.55 -11.66 2.51 -114.74 -0.29 -11.95 16 11 C 0.52 10.76 7.65 -10.99 -0.08 10.67 16 12 O -0.51 -12.56 16.06 -14.30 -0.23 -12.79 16 13 C 0.05 0.83 4.34 36.00 0.16 0.98 16 14 O -0.27 -4.42 9.03 -37.38 -0.34 -4.76 16 15 C 0.41 6.12 7.57 -16.10 -0.12 5.99 16 16 N -0.59 -8.01 9.37 -14.26 -0.13 -8.14 16 17 C 0.34 3.97 12.22 -92.17 -1.13 2.84 16 18 N -0.54 -6.73 10.45 -12.63 -0.13 -6.86 16 19 C 0.18 2.31 6.61 -84.85 -0.56 1.74 16 20 C -0.12 -1.14 10.01 -39.55 -0.40 -1.53 16 21 C -0.07 -0.55 9.95 -39.91 -0.40 -0.95 16 22 C -0.14 -1.27 9.96 -39.89 -0.40 -1.66 16 23 C -0.05 -0.59 9.61 -39.60 -0.38 -0.97 16 24 C -0.17 -2.29 5.75 -106.72 -0.61 -2.91 16 25 C 0.15 2.68 4.43 -83.69 -0.37 2.31 16 26 C -0.12 -1.93 8.45 -39.39 -0.33 -2.26 16 27 C -0.11 -1.35 10.04 -39.61 -0.40 -1.74 16 28 C -0.13 -1.54 10.04 -39.55 -0.40 -1.94 16 29 C -0.11 -1.38 10.04 -39.62 -0.40 -1.77 16 30 C -0.12 -1.89 9.66 -39.39 -0.38 -2.27 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.04 1.02 7.84 -51.93 -0.41 0.61 16 33 H 0.05 1.45 7.36 -51.93 -0.38 1.07 16 34 H 0.10 1.55 6.87 -51.93 -0.36 1.19 16 35 H 0.10 1.45 7.85 -51.93 -0.41 1.04 16 36 H 0.20 1.52 8.06 -52.49 -0.42 1.09 16 37 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 40 H 0.14 1.77 7.72 -52.48 -0.41 1.37 16 41 H 0.12 1.90 7.55 -52.48 -0.40 1.50 16 42 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 43 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 44 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 45 H 0.13 1.91 8.06 -52.48 -0.42 1.48 16 LS Contribution 393.68 15.07 5.93 5.93 Total: -1.00 -33.83 393.68 -11.40 -45.23 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -5.28 Total: 2.51 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -6.65 Total: -0.50 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: 0.18 Total: -52.24 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.57 Total: -17.55 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.83 -11.40 -45.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005505821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.942 kcal (2) G-P(sol) polarization free energy of solvation -33.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds