Wall clock time and date at job start Tue Mar 31 2020 06:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38291 * 119.92455 * 2 1 4 4 C 1.38108 * 120.07206 * 180.02562 * 3 2 1 5 5 C 1.38899 * 119.92291 * 359.97438 * 4 3 2 6 6 N 1.39841 * 120.06757 * 179.97438 * 5 4 3 7 7 N 1.39465 * 124.70130 * 359.70217 * 6 5 4 8 8 C 1.34650 * 110.59966 * 179.83875 * 7 6 5 9 9 O 1.21659 * 126.56722 * 180.13516 * 8 7 6 10 10 C 1.47558 * 106.85541 * 0.40342 * 8 7 6 11 11 C 1.38012 * 127.46341 * 179.79047 * 10 8 7 12 12 C 1.46242 * 120.00108 * 187.67269 * 11 10 8 13 13 C 1.40245 * 120.25693 * 42.49413 * 12 11 10 14 14 C 1.37606 * 119.86846 * 179.70031 * 13 12 11 15 15 C 1.38740 * 120.39407 * 0.59982 * 14 13 12 16 16 C 1.38027 * 120.52192 * 359.68034 * 15 14 13 17 17 C 1.38793 * 120.12040 * 0.02562 * 16 15 14 18 18 O 1.35413 * 120.19997 * 180.02562 * 17 16 15 19 19 C 1.34745 * 116.99746 * 5.62198 * 18 17 16 20 20 H 1.07997 * 120.00268 * 354.93219 * 19 18 17 21 21 C 1.38785 * 119.99722 * 174.92071 * 19 18 17 22 22 N 1.31460 * 119.99809 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00450 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47411 * 89.99615 * 23 21 19 25 25 H 1.48504 * 109.47244 * 210.00056 * 23 21 19 26 26 H 1.48506 * 109.46881 * 329.99513 * 23 21 19 27 27 C 1.34647 * 124.69644 * 179.97438 * 6 5 4 28 28 O 1.21672 * 126.56676 * 0.02562 * 27 6 5 29 29 C 1.38887 * 119.85618 * 0.02562 * 5 4 3 30 30 C 1.38104 * 119.93331 * 359.97438 * 29 5 4 31 31 H 1.09004 * 109.46868 * 270.00400 * 1 2 3 32 32 H 1.08999 * 109.47237 * 30.00021 * 1 2 3 33 33 H 1.08995 * 109.47136 * 150.00523 * 1 2 3 34 34 H 1.07997 * 119.96703 * 359.97438 * 3 2 1 35 35 H 1.07996 * 120.03922 * 180.27322 * 4 3 2 36 36 H 0.97006 * 124.69887 * 359.97438 * 7 6 5 37 37 H 1.07997 * 120.00158 * 7.66850 * 11 10 8 38 38 H 1.08007 * 120.06255 * 0.02562 * 13 12 11 39 39 H 1.08001 * 119.80439 * 180.32135 * 14 13 12 40 40 H 1.07998 * 119.73871 * 179.69564 * 15 14 13 41 41 H 1.07999 * 119.93926 * 179.97438 * 16 15 14 42 42 H 0.97004 * 119.99891 * 180.02562 * 22 21 19 43 43 H 1.08006 * 120.03464 * 179.97438 * 29 5 4 44 44 H 1.07996 * 119.96892 * 179.97438 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5780 1.2021 -0.0005 5 6 4.2740 0.0001 -0.0005 6 7 5.6724 0.0001 -0.0016 7 7 6.4663 1.1467 -0.0087 8 6 7.7722 0.8188 -0.0043 9 8 8.7132 1.5899 -0.0061 10 6 7.8432 -0.6551 -0.0035 11 6 8.9778 -1.4409 -0.0034 12 6 8.8642 -2.8892 -0.1716 13 6 7.9833 -3.4231 -1.1233 14 6 7.8873 -4.7870 -1.2791 15 6 8.6482 -5.6387 -0.4914 16 6 9.5161 -5.1309 0.4541 17 6 9.6344 -3.7587 0.6252 18 8 10.4857 -3.2587 1.5520 19 6 11.2755 -4.1403 2.1959 20 1 11.1550 -5.1996 2.0233 21 6 12.2440 -3.6871 3.0806 22 7 13.0149 -4.5472 3.7084 23 14 12.4522 -1.8549 3.3794 24 1 11.5809 -1.4350 4.5063 25 1 13.8696 -1.5660 3.7153 26 1 12.0716 -1.1072 2.1541 27 6 6.4389 -1.1069 -0.0012 28 8 6.0481 -2.2591 -0.0003 29 6 3.5780 -1.2018 -0.0005 30 6 2.1970 -1.1985 0.0000 31 1 -0.3633 0.0001 1.0277 32 1 -0.3634 0.8900 -0.5138 33 1 -0.3633 -0.8900 -0.5137 34 1 1.6552 2.1328 -0.0004 35 1 4.1162 2.1384 0.0039 36 1 6.1249 2.0547 -0.0139 37 1 9.9495 -0.9863 0.1207 38 1 7.3852 -2.7650 -1.7363 39 1 7.2124 -5.1969 -2.0159 40 1 8.5609 -6.7076 -0.6193 41 1 10.1035 -5.8026 1.0625 42 1 13.6915 -4.2304 4.3270 43 1 4.1163 -2.1382 -0.0010 44 1 1.6552 -2.1327 -0.0004 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005541394.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:56 Heat of formation + Delta-G solvation = 24.846840 kcal Electronic energy + Delta-G solvation = -31534.806651 eV Core-core repulsion = 27192.112282 eV Total energy + Delta-G solvation = -4342.694369 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.126 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.05179 -41.08908 -40.35163 -39.54230 -38.47243 -37.85612 -35.25345 -34.56437 -34.06258 -32.12644 -31.37257 -31.10883 -30.83080 -28.01332 -27.28221 -26.19935 -24.21184 -23.41238 -23.17532 -22.52204 -21.85269 -21.09304 -19.98870 -19.74217 -19.03006 -17.84727 -17.61532 -17.41252 -16.84518 -16.71018 -16.44971 -16.30048 -15.92092 -15.79955 -15.68929 -15.58003 -15.32149 -15.23129 -14.84436 -14.64129 -14.43220 -14.41426 -14.19612 -14.06853 -13.66959 -13.29709 -13.02631 -12.77462 -12.71156 -12.57538 -12.49998 -12.40033 -12.16943 -12.07005 -11.79608 -11.47072 -11.13874 -10.98267 -10.81866 -10.53718 -9.99676 -9.56239 -9.12330 -8.80931 -8.57938 -6.28904 -0.95397 0.14098 0.34980 0.36736 0.61429 0.66323 1.30091 1.32302 1.38515 1.47181 1.97182 2.21076 2.25998 2.69809 2.76367 2.85265 2.89698 3.05156 3.58420 3.75417 3.80077 3.93859 4.00701 4.08128 4.16956 4.18163 4.37535 4.41558 4.43246 4.47217 4.62643 4.75934 4.79965 4.84710 4.90451 4.92393 5.07075 5.09536 5.20620 5.25402 5.33113 5.37404 5.52587 5.58077 5.60854 5.66178 5.68961 5.80726 5.94273 6.07421 6.11716 6.55772 6.75149 6.88070 7.43261 8.52339 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.012069 B = 0.002796 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.446232 B =10012.192573 C =11217.387625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.109 4.109 3 C -0.088 4.088 4 C -0.154 4.154 5 C 0.135 3.865 6 N -0.356 5.356 7 N -0.501 5.501 8 C 0.580 3.420 9 O -0.531 6.531 10 C -0.334 4.334 11 C 0.159 3.841 12 C -0.200 4.200 13 C 0.004 3.996 14 C -0.194 4.194 15 C -0.036 4.036 16 C -0.247 4.247 17 C 0.166 3.834 18 O -0.225 6.225 19 C -0.401 4.401 20 H 0.092 0.908 21 C 0.023 3.977 22 N -0.909 5.909 23 Si 0.953 3.047 24 H -0.269 1.269 25 H -0.265 1.265 26 H -0.257 1.257 27 C 0.564 3.436 28 O -0.491 6.491 29 C -0.161 4.161 30 C -0.093 4.093 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.158 0.842 35 H 0.143 0.857 36 H 0.450 0.550 37 H 0.146 0.854 38 H 0.132 0.868 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.121 0.879 42 H 0.288 0.712 43 H 0.139 0.861 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.014 10.499 -10.617 28.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.110 4.110 3 C -0.106 4.106 4 C -0.175 4.175 5 C 0.043 3.957 6 N -0.171 5.171 7 N -0.257 5.257 8 C 0.369 3.631 9 O -0.407 6.407 10 C -0.341 4.341 11 C 0.138 3.862 12 C -0.201 4.201 13 C -0.014 4.014 14 C -0.212 4.212 15 C -0.054 4.054 16 C -0.266 4.266 17 C 0.114 3.886 18 O -0.131 6.131 19 C -0.476 4.476 20 H 0.110 0.890 21 C -0.178 4.178 22 N -0.548 5.548 23 Si 0.775 3.225 24 H -0.195 1.195 25 H -0.189 1.189 26 H -0.181 1.181 27 C 0.356 3.644 28 O -0.365 6.365 29 C -0.182 4.182 30 C -0.111 4.111 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.176 0.824 35 H 0.161 0.839 36 H 0.300 0.700 37 H 0.163 0.837 38 H 0.150 0.850 39 H 0.170 0.830 40 H 0.168 0.832 41 H 0.139 0.861 42 H 0.097 0.903 43 H 0.157 0.843 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -23.445 10.405 -10.374 27.668 hybrid contribution 0.749 0.629 0.719 1.214 sum -22.696 11.035 -9.655 27.020 Atomic orbital electron populations 1.20820 0.88839 1.03909 1.03141 1.20337 0.97914 0.92654 1.00064 1.21182 0.92410 0.99139 0.97913 1.20923 0.95561 0.95600 1.05392 1.18069 0.77568 0.96672 1.03351 1.44579 1.02411 0.99012 1.71116 1.44936 1.01854 1.01912 1.76979 1.17802 0.81358 0.88314 0.75589 1.90908 1.38577 1.58607 1.52565 1.22073 0.94176 0.94677 1.23197 1.22776 0.97002 0.91759 0.74616 1.18180 1.06370 0.90821 1.04758 1.21105 0.90606 0.96105 0.93620 1.21070 1.03784 0.92525 1.03819 1.21432 0.91514 1.01133 0.91339 1.21285 1.06156 0.94106 1.05092 1.19629 0.88546 0.92799 0.87649 1.83390 1.46094 1.37405 1.46182 1.20776 1.13810 0.89936 1.23094 0.89040 1.25165 0.93957 1.03774 0.94863 1.69653 1.20899 1.36564 1.27670 0.85470 0.78331 0.78878 0.79787 1.19459 1.18950 1.18096 1.18045 0.86119 0.83370 0.76833 1.90806 1.78506 1.17076 1.50134 1.21500 0.95623 0.97260 1.03835 1.21174 0.92195 0.99355 0.98383 0.90432 0.90113 0.90811 0.82411 0.83893 0.69973 0.83673 0.84994 0.82988 0.83181 0.86080 0.90251 0.84338 0.83712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 71.24 0.71 -0.16 16 2 C -0.11 -1.50 5.88 -19.84 -0.12 -1.62 16 3 C -0.09 -1.14 9.69 22.25 0.22 -0.92 16 4 C -0.15 -2.50 9.62 22.40 0.22 -2.28 16 5 C 0.14 3.08 6.66 38.18 0.25 3.34 16 6 N -0.36 -9.30 3.73 -306.46 -1.14 -10.44 16 7 N -0.50 -11.68 6.68 -175.88 -1.17 -12.86 16 8 C 0.58 17.82 8.59 86.72 0.75 18.56 16 9 O -0.53 -18.95 18.05 -4.22 -0.08 -19.03 16 10 C -0.33 -11.14 6.07 -18.42 -0.11 -11.25 16 11 C 0.16 5.79 9.44 24.30 0.23 6.02 16 12 C -0.20 -7.70 5.35 -20.07 -0.11 -7.81 16 13 C 0.00 0.12 7.09 22.61 0.16 0.28 16 14 C -0.19 -5.73 10.02 22.24 0.22 -5.50 16 15 C -0.04 -1.16 10.03 22.34 0.22 -0.94 16 16 C -0.25 -10.22 9.15 22.35 0.20 -10.01 16 17 C 0.17 7.43 6.67 23.04 0.15 7.59 16 18 O -0.23 -11.61 8.05 -18.21 -0.15 -11.75 16 19 C -0.40 -22.41 9.95 67.95 0.68 -21.74 16 20 H 0.09 5.30 5.44 -2.91 -0.02 5.28 16 21 C 0.02 1.30 5.50 84.88 0.47 1.76 16 22 N -0.91 -52.33 13.96 21.63 0.30 -52.02 16 23 Si 0.95 44.28 28.62 68.60 1.96 46.25 16 24 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 25 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 26 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 27 C 0.56 17.98 7.26 86.71 0.63 18.61 16 28 O -0.49 -16.98 11.46 -4.26 -0.05 -17.03 16 29 C -0.16 -3.77 9.34 22.39 0.21 -3.56 16 30 C -0.09 -1.62 9.69 22.25 0.22 -1.41 16 31 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.08 0.42 8.08 -2.39 -0.02 0.40 16 33 H 0.07 0.50 8.08 -2.39 -0.02 0.49 16 34 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 35 H 0.14 1.59 6.78 -2.91 -0.02 1.57 16 36 H 0.45 7.05 7.66 -213.72 -1.64 5.41 16 37 H 0.15 5.30 8.06 -2.91 -0.02 5.27 16 38 H 0.13 3.92 6.74 -2.91 -0.02 3.90 16 39 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 40 H 0.15 3.74 8.06 -2.91 -0.02 3.71 16 41 H 0.12 5.38 5.64 -2.91 -0.02 5.37 16 42 H 0.29 15.23 8.31 -92.71 -0.77 14.46 16 43 H 0.14 3.83 5.32 -2.91 -0.02 3.82 16 44 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -69.28 378.34 4.33 -64.95 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: -0.55 Total: 22.98 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: 5.20 Total: -11.05 kcal Atomic # 7 Polarization: -73.31 SS G_CDS: -2.01 Total: -75.32 kcal Atomic # 8 Polarization: -47.54 SS G_CDS: -0.27 Total: -47.81 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.96 Total: 46.25 kcal Total: -69.28 4.33 -64.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005541394.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.797 kcal (2) G-P(sol) polarization free energy of solvation -69.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds