Wall clock time and date at job start Tue Mar 31 2020 06:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86798 * 120.00411 * 2 1 4 4 H 1.48498 * 109.46890 * 265.74080 * 3 2 1 5 5 H 1.48492 * 109.47224 * 25.74101 * 3 2 1 6 6 H 1.48500 * 109.47303 * 145.74318 * 3 2 1 7 7 C 1.38899 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99773 * 337.86502 * 7 2 1 9 9 N 1.37136 * 119.99790 * 157.86271 * 7 2 1 10 10 C 1.34775 * 119.99997 * 152.87231 * 9 7 2 11 11 O 1.21283 * 120.00164 * 174.95036 * 10 9 7 12 12 C 1.50704 * 119.99956 * 354.95173 * 10 9 7 13 13 S 1.80997 * 109.47073 * 179.97438 * 12 10 9 14 14 C 1.76198 * 99.99749 * 180.02562 * 13 12 10 15 15 C 1.40309 * 119.23674 * 179.97438 * 14 13 12 16 16 C 1.36177 * 119.87915 * 179.74336 * 15 14 13 17 17 C 1.41043 * 118.29787 * 0.25777 * 16 15 14 18 18 C 1.40328 * 121.24488 * 180.02562 * 17 16 15 19 19 C 1.36214 * 119.64771 * 180.02562 * 18 17 16 20 20 C 1.39279 * 120.84552 * 359.95801 * 19 18 17 21 21 C 1.36145 * 121.02968 * 0.02562 * 20 19 18 22 22 C 1.40534 * 119.75987 * 359.97438 * 21 20 19 23 23 N 1.31789 * 119.24129 * 0.25518 * 14 13 12 24 24 C 1.39789 * 120.00180 * 332.87113 * 9 7 2 25 25 C 1.38956 * 120.07625 * 117.86901 * 24 9 7 26 26 C 1.38086 * 119.91924 * 179.79298 * 25 24 9 27 27 C 1.38309 * 120.07899 * 0.45809 * 26 25 24 28 28 C 1.38312 * 120.15392 * 359.79535 * 27 26 25 29 29 C 1.38074 * 120.07802 * 359.97438 * 28 27 26 30 30 H 0.97005 * 119.99431 * 359.97438 * 1 2 3 31 31 H 1.09009 * 109.46955 * 60.00201 * 12 10 9 32 32 H 1.08992 * 109.47289 * 300.00010 * 12 10 9 33 33 H 1.08003 * 120.06291 * 0.02808 * 15 14 13 34 34 H 1.07999 * 120.85192 * 180.22865 * 16 15 14 35 35 H 1.08007 * 120.17164 * 359.95023 * 18 17 16 36 36 H 1.08000 * 119.57691 * 179.97438 * 19 18 17 37 37 H 1.08002 * 119.48544 * 180.02562 * 20 19 18 38 38 H 1.07998 * 120.12049 * 180.02562 * 21 20 19 39 39 H 1.07995 * 120.04351 * 359.97438 * 25 24 9 40 40 H 1.08004 * 119.96360 * 180.25139 * 26 25 24 41 41 H 1.08000 * 119.92049 * 179.76802 * 27 26 25 42 42 H 1.08000 * 119.95739 * 179.97438 * 28 27 26 43 43 H 1.08001 * 120.04302 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 2.5858 1.9943 -1.3962 5 1 1.4038 2.6769 0.6080 6 1 3.4979 1.4677 0.7881 7 6 2.0086 -1.2029 0.0005 8 1 1.5282 -2.1036 0.3534 9 7 3.3041 -1.2469 -0.4470 10 6 4.1476 -2.1876 0.0222 11 8 5.2649 -2.2850 -0.4395 12 6 3.7024 -3.1186 1.1205 13 16 5.0481 -4.2585 1.5276 14 6 4.2754 -5.2022 2.7992 15 6 4.9936 -6.2370 3.4173 16 6 4.4110 -6.9713 4.4051 17 6 3.0846 -6.6638 4.7730 18 6 2.4247 -7.3803 5.7832 19 6 1.1432 -7.0561 6.1120 20 6 0.4784 -6.0212 5.4589 21 6 1.0890 -5.3056 4.4746 22 6 2.4108 -5.6109 4.1078 23 7 3.0343 -4.9235 3.1439 24 6 3.7500 -0.3161 -1.3898 25 6 4.7750 0.5650 -1.0677 26 6 5.2158 1.4803 -2.0030 27 6 4.6318 1.5270 -3.2559 28 6 3.6078 0.6550 -3.5781 29 6 3.1652 -0.2660 -2.6495 30 1 -0.4849 0.8401 0.0004 31 1 2.8343 -3.6866 0.7857 32 1 3.4378 -2.5379 2.0041 33 1 6.0084 -6.4478 3.1133 34 1 4.9506 -7.7689 4.8940 35 1 2.9299 -8.1853 6.2963 36 1 0.6363 -7.6086 6.8894 37 1 -0.5374 -5.7825 5.7375 38 1 0.5597 -4.5058 3.9781 39 1 5.2284 0.5321 -0.0881 40 1 6.0152 2.1628 -1.7548 41 1 4.9760 2.2464 -3.9842 42 1 3.1538 0.6945 -4.5573 43 1 2.3653 -0.9464 -2.9015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005626712.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:23 Heat of formation + Delta-G solvation = 69.493191 kcal Electronic energy + Delta-G solvation = -28599.600971 eV Core-core repulsion = 24701.595484 eV Total energy + Delta-G solvation = -3898.005487 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 364.099 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.68706 -39.90373 -37.73498 -37.05287 -35.02822 -33.56078 -32.19591 -30.63834 -30.45373 -30.36563 -29.93903 -28.15679 -25.09529 -24.52602 -23.65047 -22.24194 -22.07865 -21.96085 -19.42507 -18.58025 -18.01419 -17.43066 -17.19829 -16.30886 -15.95305 -15.58388 -15.23870 -14.99869 -14.71722 -14.55265 -14.34981 -14.08566 -13.95331 -13.85934 -13.62974 -13.14631 -12.95700 -12.83668 -12.75606 -12.42013 -12.34375 -12.11474 -11.70089 -11.67819 -11.47338 -11.09825 -10.97450 -10.71986 -10.62726 -10.62542 -10.24343 -10.00200 -9.50455 -9.42843 -9.25744 -9.04388 -8.51174 -8.43224 -8.30407 -7.74612 -7.29358 -6.63041 -4.20998 0.33493 0.74417 1.66974 1.86660 1.95797 1.97271 2.45494 2.79745 3.10970 3.25706 3.29291 3.44859 4.05497 4.10391 4.14831 4.36000 4.36836 4.56318 4.74124 4.79423 4.89612 4.93646 5.07990 5.21842 5.32659 5.41638 5.46160 5.53999 5.67508 5.72695 5.76896 5.80058 5.94094 5.96203 5.98773 6.13237 6.15354 6.27636 6.29974 6.35996 6.43389 6.57081 6.77127 6.86886 7.02579 7.08437 7.19165 7.54500 7.79604 7.81818 8.10089 8.68354 9.09394 9.36664 10.44428 Molecular weight = 364.10amu Principal moments of inertia in cm(-1) A = 0.014727 B = 0.002765 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.756067 B =10125.807728 C =11537.871385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.080 3.920 3 Si 0.859 3.141 4 H -0.251 1.251 5 H -0.292 1.292 6 H -0.260 1.260 7 C -0.358 4.358 8 H 0.116 0.884 9 N -0.412 5.412 10 C 0.489 3.511 11 O -0.569 6.569 12 C -0.104 4.104 13 S 0.004 5.996 14 C 0.138 3.862 15 C -0.151 4.151 16 C -0.048 4.048 17 C -0.116 4.116 18 C -0.094 4.094 19 C -0.126 4.126 20 C -0.101 4.101 21 C -0.093 4.093 22 C 0.146 3.854 23 N -0.479 5.479 24 C 0.158 3.842 25 C -0.126 4.126 26 C -0.117 4.117 27 C -0.139 4.139 28 C -0.114 4.114 29 C -0.109 4.109 30 H 0.278 0.722 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.139 0.861 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.235 -9.565 7.634 12.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.130 4.130 3 Si 0.685 3.315 4 H -0.176 1.176 5 H -0.219 1.219 6 H -0.185 1.185 7 C -0.483 4.483 8 H 0.134 0.866 9 N -0.127 5.127 10 C 0.279 3.721 11 O -0.453 6.453 12 C -0.255 4.255 13 S 0.244 5.756 14 C -0.125 4.125 15 C -0.175 4.175 16 C -0.075 4.075 17 C -0.120 4.120 18 C -0.112 4.112 19 C -0.144 4.144 20 C -0.121 4.121 21 C -0.112 4.112 22 C 0.022 3.978 23 N -0.194 5.194 24 C 0.066 3.934 25 C -0.146 4.146 26 C -0.136 4.136 27 C -0.157 4.157 28 C -0.133 4.133 29 C -0.129 4.129 30 H 0.089 0.911 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.159 0.841 34 H 0.158 0.842 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.146 0.854 38 H 0.156 0.844 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.182 -8.859 6.463 12.129 hybrid contribution -0.878 0.369 1.160 1.501 sum 4.304 -8.490 7.623 12.195 Atomic orbital electron populations 1.69762 1.06317 1.28698 1.43147 1.25177 0.95063 0.98594 0.94120 0.87189 0.80166 0.83080 0.81091 1.17567 1.21905 1.18452 1.19223 0.85348 0.97742 1.46018 0.86615 1.41386 1.11135 1.26418 1.33759 1.19635 0.84373 0.84153 0.83956 1.90629 1.20218 1.73526 1.60909 1.23454 1.00072 0.99171 1.02778 1.86137 1.18610 1.34298 1.36507 1.23903 0.93318 0.96488 0.98787 1.21427 1.01499 0.96517 0.98092 1.21324 0.93297 0.97838 0.95075 1.18791 0.95372 0.98585 0.99291 1.20913 0.95084 0.98979 0.96266 1.20868 0.95044 0.98104 1.00431 1.20903 1.00213 0.95333 0.95668 1.20906 0.92660 1.00266 0.97378 1.18898 0.94523 0.92066 0.92350 1.68635 1.08078 1.27769 1.14880 1.17653 0.94784 0.91609 0.89375 1.21182 0.98234 0.95311 0.99845 1.20847 1.00050 0.98919 0.93735 1.20958 0.97907 1.00135 0.96725 1.20912 0.97358 0.96013 0.98987 1.21180 1.00655 0.99396 0.91679 0.91128 0.86544 0.86154 0.84129 0.84168 0.85557 0.85800 0.85376 0.84362 0.86287 0.86441 0.86671 0.86319 0.85396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.78 13.96 55.49 0.77 -22.00 16 2 C 0.08 2.09 5.20 -17.48 -0.09 2.00 16 3 Si 0.86 20.40 23.47 -169.99 -3.99 16.41 16 4 H -0.25 -5.82 5.27 56.52 0.30 -5.53 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.26 -6.19 6.11 56.52 0.35 -5.84 16 7 C -0.36 -9.11 9.12 -14.93 -0.14 -9.24 16 8 H 0.12 3.03 6.90 -52.49 -0.36 2.66 16 9 N -0.41 -9.91 2.49 -58.97 -0.15 -10.06 16 10 C 0.49 11.31 7.47 -10.98 -0.08 11.23 16 11 O -0.57 -14.02 15.43 5.55 0.09 -13.93 16 12 C -0.10 -2.08 3.97 36.01 0.14 -1.94 16 13 S 0.00 0.06 21.18 -107.50 -2.28 -2.21 16 14 C 0.14 2.20 6.98 -16.79 -0.12 2.09 16 15 C -0.15 -1.91 9.74 -39.54 -0.39 -2.30 16 16 C -0.05 -0.53 9.88 -39.26 -0.39 -0.92 16 17 C -0.12 -1.47 5.74 -106.77 -0.61 -2.08 16 18 C -0.09 -0.93 9.77 -39.52 -0.39 -1.31 16 19 C -0.13 -1.18 9.96 -39.92 -0.40 -1.58 16 20 C -0.10 -1.08 9.94 -39.95 -0.40 -1.47 16 21 C -0.09 -1.26 9.98 -39.47 -0.39 -1.65 16 22 C 0.15 2.23 6.60 -84.86 -0.56 1.67 16 23 N -0.48 -8.21 9.05 -9.80 -0.09 -8.30 16 24 C 0.16 3.65 2.29 -83.69 -0.19 3.46 16 25 C -0.13 -2.72 5.86 -39.37 -0.23 -2.95 16 26 C -0.12 -2.15 9.55 -39.61 -0.38 -2.53 16 27 C -0.14 -2.38 9.74 -39.53 -0.38 -2.76 16 28 C -0.11 -2.07 9.63 -39.61 -0.38 -2.45 16 29 C -0.11 -2.34 8.48 -39.37 -0.33 -2.67 16 30 H 0.28 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.12 2.34 7.45 -51.91 -0.39 1.95 16 32 H 0.12 2.44 8.11 -51.92 -0.42 2.02 16 33 H 0.14 1.44 8.06 -52.48 -0.42 1.01 16 34 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 35 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 36 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 39 H 0.12 2.61 7.71 -52.49 -0.40 2.20 16 40 H 0.12 1.78 8.06 -52.48 -0.42 1.36 16 41 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 42 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.13 2.73 8.06 -52.49 -0.42 2.31 16 LS Contribution 373.02 15.07 5.62 5.62 Total: -1.00 -30.73 373.02 -10.82 -41.55 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -5.10 Total: 8.35 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -5.71 Total: -15.42 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.54 Total: -40.36 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.09 Total: -13.93 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -3.99 Total: 16.41 kcal Atomic # 16 Polarization: 0.06 SS G_CDS: -2.28 Total: -2.21 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.73 -10.82 -41.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005626712.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.048 kcal (2) G-P(sol) polarization free energy of solvation -30.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds