Wall clock time and date at job start Tue Mar 31 2020 06:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31424 * 1 3 3 Si 1.86801 * 120.00056 * 2 1 4 4 H 1.48502 * 109.47122 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47123 * 299.99688 * 3 2 1 6 6 H 1.48504 * 109.47025 * 59.99858 * 3 2 1 7 7 C 1.38795 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99975 * 179.97438 * 7 2 1 9 9 O 1.34862 * 120.00005 * 0.02562 * 7 2 1 10 10 C 1.34780 * 117.00043 * 179.97438 * 9 7 2 11 11 O 1.21545 * 119.99784 * 0.02562 * 10 9 7 12 12 C 1.47364 * 120.00272 * 179.97438 * 10 9 7 13 13 C 1.39887 * 120.11378 * 0.02562 * 12 10 9 14 14 C 1.37710 * 120.31117 * 180.46724 * 13 12 10 15 15 C 1.39196 * 119.72601 * 359.69587 * 14 13 12 16 16 C 1.38879 * 119.79583 * 359.15067 * 15 14 13 17 17 C 1.37022 * 121.15743 * 1.86479 * 16 15 14 18 18 S 1.76467 * 117.33824 * 182.31691 * 16 15 14 19 19 O 1.42105 * 106.97528 * 265.82947 * 18 16 15 20 20 O 1.42091 * 106.70934 * 131.86230 * 18 16 15 21 21 N 1.65405 * 104.64363 * 18.89686 * 18 16 15 22 22 C 1.30725 * 121.88300 * 339.89207 * 21 18 16 23 23 C 1.46745 * 114.75717 * 175.96531 * 22 21 18 24 24 C 1.46136 * 127.43149 * 136.55049 * 23 22 21 25 25 C 1.50143 * 117.11607 * 344.15039 * 24 23 22 26 26 C 1.48373 * 120.14460 * 53.18289 * 25 24 23 27 27 C 1.46452 * 124.70953 * 345.88225 * 26 25 24 28 28 N 1.34826 * 123.51141 * 357.69129 * 22 21 18 29 29 H 0.97006 * 120.00027 * 0.02562 * 1 2 3 30 30 H 1.07997 * 119.84076 * 0.49266 * 13 12 10 31 31 H 1.07994 * 120.13404 * 179.71202 * 14 13 12 32 32 H 1.08002 * 120.39578 * 178.61124 * 17 16 15 33 33 H 1.09000 * 105.73097 * 261.33955 * 23 22 21 34 34 H 1.08997 * 105.73869 * 11.75755 * 23 22 21 35 35 H 1.09002 * 107.91757 * 106.07915 * 24 23 22 36 36 H 1.08999 * 107.91890 * 222.22161 * 24 23 22 37 37 H 1.08995 * 107.28824 * 175.91338 * 25 24 23 38 38 H 1.09000 * 107.28603 * 290.45753 * 25 24 23 39 39 H 1.09001 * 106.31461 * 109.87137 * 26 25 24 40 40 H 1.08991 * 106.32235 * 221.95227 * 26 25 24 41 41 H 1.09001 * 106.97111 * 193.58702 * 27 26 25 42 42 H 1.09000 * 106.97186 * 79.85594 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.7083 1.3464 0.0006 5 1 1.8896 2.3964 -1.2125 6 1 1.8895 2.3965 1.2125 7 6 2.0082 -1.2020 0.0005 8 1 3.0882 -1.2020 0.0001 9 8 1.3339 -2.3699 0.0005 10 6 2.0679 -3.5003 0.0005 11 8 3.2817 -3.4367 0.0010 12 6 1.3989 -4.8134 0.0011 13 6 0.0021 -4.8894 0.0011 14 6 -0.6273 -6.1142 0.0113 15 6 0.1324 -7.2806 0.0153 16 6 1.5187 -7.2013 -0.0090 17 6 2.1598 -5.9904 0.0013 18 16 2.4164 -8.7195 -0.0657 19 8 2.7382 -9.0615 1.2755 20 8 3.3867 -8.5822 -1.0946 21 7 1.3160 -9.8364 -0.5925 22 6 0.0279 -9.6321 -0.5033 23 6 -0.8038 -10.6827 -1.1014 24 6 -2.0143 -11.2824 -0.5439 25 6 -2.2762 -11.0624 0.9180 26 6 -2.2848 -9.6871 1.4747 27 6 -1.7704 -8.5038 0.7820 28 7 -0.5142 -8.5324 0.0575 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5854 -3.9832 -0.0074 31 1 -1.7058 -6.1695 0.0160 32 1 3.2388 -5.9433 0.0047 33 1 -1.0845 -10.3121 -2.0873 34 1 -0.1289 -11.5140 -1.3052 35 1 -2.8677 -10.8937 -1.0997 36 1 -1.9669 -12.3573 -0.7181 37 1 -3.2439 -11.5097 1.1447 38 1 -1.5277 -11.6307 1.4702 39 1 -3.3214 -9.4665 1.7296 40 1 -1.7555 -9.7384 2.4261 41 1 -1.6915 -7.7097 1.5245 42 1 -2.5385 -8.1899 0.0752 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005872751.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:36 Heat of formation + Delta-G solvation = -71.653883 kcal Electronic energy + Delta-G solvation = -30609.256752 eV Core-core repulsion = 26261.988654 eV Total energy + Delta-G solvation = -4347.268098 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 364.097 amu Computer time = 2.58 seconds Orbital eigenvalues (eV) -41.48666 -39.51325 -38.28720 -36.98050 -36.41470 -35.63511 -35.60005 -35.08685 -32.39422 -31.88880 -31.54971 -30.51915 -27.99557 -25.98714 -25.51549 -23.71477 -23.40483 -21.13491 -20.49490 -20.33534 -19.33726 -18.52409 -17.87929 -17.41529 -17.27652 -16.45047 -16.02193 -15.77603 -15.53284 -15.15842 -15.03727 -14.78264 -14.69474 -14.52153 -14.41749 -14.28476 -14.13306 -13.46289 -13.27785 -13.08790 -12.90117 -12.60104 -12.16398 -11.99077 -11.91664 -11.87334 -11.85544 -11.67804 -11.42301 -11.29864 -11.23432 -10.92008 -10.65056 -10.64021 -10.49969 -10.18516 -10.01311 -9.94864 -9.51910 -9.26936 -8.75961 -8.49449 -6.62363 -4.22853 0.38409 0.47280 0.88236 1.13359 1.89048 2.82079 2.88652 3.10540 3.10942 3.18194 3.60848 3.77918 3.83815 3.98627 4.09562 4.13514 4.15850 4.30901 4.38487 4.49627 4.53736 4.77023 4.85509 4.91827 4.99422 5.04672 5.07976 5.13492 5.21425 5.22972 5.36983 5.40383 5.43814 5.60338 5.63021 5.67241 5.76349 5.78902 5.96949 6.22023 6.28454 6.51785 6.71086 6.85867 7.23085 7.75796 8.52903 8.86807 9.62781 10.54879 Molecular weight = 364.10amu Principal moments of inertia in cm(-1) A = 0.016338 B = 0.002709 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.403640 B =10332.656084 C =11618.418828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.042 3.958 3 Si 0.947 3.053 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.370 4.370 8 H 0.101 0.899 9 O -0.202 6.202 10 C 0.427 3.573 11 O -0.547 6.547 12 C -0.104 4.104 13 C -0.005 4.005 14 C -0.155 4.155 15 C 0.204 3.796 16 C -0.706 4.706 17 C 0.054 3.946 18 S 2.633 3.367 19 O -0.958 6.958 20 O -0.943 6.943 21 N -0.955 5.955 22 C 0.557 3.443 23 C -0.110 4.110 24 C -0.097 4.097 25 C -0.118 4.118 26 C -0.133 4.133 27 C 0.116 3.884 28 N -0.563 5.563 29 H 0.272 0.728 30 H 0.159 0.841 31 H 0.145 0.855 32 H 0.153 0.847 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.096 0.904 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.584 -21.207 0.127 25.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.164 4.164 3 Si 0.771 3.229 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.446 4.446 8 H 0.119 0.881 9 O -0.109 6.109 10 C 0.275 3.725 11 O -0.446 6.446 12 C -0.107 4.107 13 C -0.024 4.024 14 C -0.175 4.175 15 C 0.108 3.892 16 C -0.793 4.793 17 C 0.034 3.966 18 S 2.720 3.280 19 O -0.946 6.946 20 O -0.932 6.932 21 N -0.804 5.804 22 C 0.287 3.713 23 C -0.152 4.152 24 C -0.136 4.136 25 C -0.155 4.155 26 C -0.171 4.171 27 C -0.006 4.006 28 N -0.272 5.272 29 H 0.082 0.918 30 H 0.177 0.823 31 H 0.163 0.837 32 H 0.170 0.830 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.085 0.915 41 H 0.115 0.885 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.047 -21.712 0.131 24.831 hybrid contribution -0.328 1.962 0.194 1.999 sum -12.375 -19.750 0.325 23.309 Atomic orbital electron populations 1.69970 1.06126 1.28112 1.44971 1.25420 0.95922 0.99081 0.95941 0.85544 0.79625 0.79476 0.78282 1.18695 1.19959 1.19968 1.21446 0.92789 0.79492 1.50848 0.88117 1.83867 1.39255 1.13287 1.74495 1.20424 0.85960 0.85144 0.80935 1.90677 1.14809 1.87630 1.51442 1.19656 0.93690 0.92138 1.05182 1.21790 0.93855 0.98291 0.88439 1.20951 1.00157 0.90164 1.06270 1.17677 0.90116 0.84756 0.96621 1.30667 1.04640 1.21907 1.22043 1.20574 1.00690 0.88627 0.86682 1.04193 0.76365 0.72579 0.74868 1.93624 1.83059 1.81689 1.36269 1.93617 1.57256 1.85139 1.57213 1.75185 1.10661 1.46431 1.48100 1.20355 0.89508 0.83699 0.77736 1.18805 0.98462 0.97624 1.00265 1.19502 0.95975 1.01750 0.96343 1.19989 1.03387 0.95991 0.96181 1.19578 1.03016 0.93832 1.00682 1.20098 0.83276 1.00272 0.96966 1.44789 1.24067 1.05747 1.52551 0.91765 0.82334 0.83704 0.82972 0.87694 0.87158 0.91384 0.89807 0.90880 0.91970 0.89324 0.91486 0.88546 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.56 13.67 55.49 0.76 -22.80 16 2 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 3 Si 0.95 20.48 29.55 -169.99 -5.02 15.46 16 4 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.37 -10.58 9.65 30.94 0.30 -10.28 16 8 H 0.10 2.93 6.86 -52.48 -0.36 2.57 16 9 O -0.20 -5.56 8.98 -21.79 -0.20 -5.76 16 10 C 0.43 10.72 7.83 34.44 0.27 10.99 16 11 O -0.55 -15.06 15.60 -19.30 -0.30 -15.36 16 12 C -0.10 -2.07 5.88 -104.85 -0.62 -2.69 16 13 C 0.00 -0.08 9.59 -39.16 -0.38 -0.45 16 14 C -0.15 -1.89 8.73 -39.42 -0.34 -2.23 16 15 C 0.20 2.70 5.94 -83.06 -0.49 2.20 16 16 C -0.71 -11.70 5.84 -39.79 -0.23 -11.94 16 17 C 0.05 1.02 9.32 -39.30 -0.37 0.66 16 18 S 2.63 45.25 6.08 -107.50 -0.65 44.60 16 19 O -0.96 -18.57 18.05 -57.11 -1.03 -19.60 16 20 O -0.94 -18.83 17.98 -57.11 -1.03 -19.85 16 21 N -0.96 -13.17 10.44 31.73 0.33 -12.84 16 22 C 0.56 5.75 6.73 -157.26 -1.06 4.69 16 23 C -0.11 -0.66 5.04 -32.98 -0.17 -0.82 16 24 C -0.10 -0.31 5.47 -31.41 -0.17 -0.49 16 25 C -0.12 -0.42 5.34 -30.41 -0.16 -0.59 16 26 C -0.13 -0.55 5.27 -32.11 -0.17 -0.72 16 27 C 0.12 0.69 4.43 -7.94 -0.04 0.66 16 28 N -0.56 -5.57 3.07 -116.91 -0.36 -5.93 16 29 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.16 2.56 7.59 -52.49 -0.40 2.17 16 31 H 0.15 1.16 6.86 -52.49 -0.36 0.80 16 32 H 0.15 2.91 7.67 -52.49 -0.40 2.51 16 33 H 0.11 0.47 8.03 -51.93 -0.42 0.05 16 34 H 0.11 0.66 7.70 -51.93 -0.40 0.26 16 35 H 0.07 0.14 8.11 -51.93 -0.42 -0.28 16 36 H 0.08 0.17 8.09 -51.93 -0.42 -0.25 16 37 H 0.07 0.15 8.09 -51.93 -0.42 -0.27 16 38 H 0.06 0.29 8.10 -51.93 -0.42 -0.13 16 39 H 0.09 0.18 8.05 -51.93 -0.42 -0.24 16 40 H 0.07 0.34 8.06 -51.93 -0.42 -0.08 16 41 H 0.10 0.57 6.90 -51.93 -0.36 0.21 16 42 H 0.07 0.27 7.82 -51.93 -0.41 -0.13 16 LS Contribution 361.54 15.07 5.45 5.45 Total: -1.00 -38.34 361.54 -10.53 -48.87 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -4.75 Total: -2.26 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -3.72 Total: -9.98 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.73 Total: -41.56 kcal Atomic # 8 Polarization: -58.02 SS G_CDS: -2.55 Total: -60.58 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 45.25 SS G_CDS: -0.65 Total: 44.60 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -38.34 -10.53 -48.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005872751.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.784 kcal (2) G-P(sol) polarization free energy of solvation -38.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.58 seconds