Wall clock time and date at job start Tue Mar 31 2020 05:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38332 * 119.87176 * 2 1 4 4 C 1.38010 * 120.12232 * 179.97438 * 3 2 1 5 5 C 1.39376 * 119.87260 * 0.02562 * 4 3 2 6 6 C 1.48337 * 120.11959 * 179.97438 * 5 4 3 7 7 C 1.35044 * 122.28104 * 179.97438 * 6 5 4 8 8 S 1.76219 * 108.23081 * 179.73713 * 7 6 5 9 9 C 1.76121 * 90.01057 * 0.30772 * 8 7 6 10 10 C 1.46537 * 125.32929 * 179.97438 * 9 8 7 11 11 C 1.34807 * 119.99972 * 359.68573 * 10 9 8 12 12 C 1.47046 * 120.00218 * 180.02562 * 11 10 9 13 13 C 1.39827 * 120.21233 * 0.02562 * 12 11 10 14 14 C 1.37827 * 119.89867 * 179.97438 * 13 12 11 15 15 C 1.38568 * 120.33496 * 359.97438 * 14 13 12 16 16 C 1.38115 * 120.43316 * 0.02562 * 15 14 13 17 17 C 1.38726 * 120.09582 * 0.02562 * 16 15 14 18 18 O 1.35578 * 120.16943 * 180.02562 * 17 16 15 19 19 C 1.34803 * 116.99831 * 354.40598 * 18 17 16 20 20 H 1.08004 * 120.00055 * 5.05676 * 19 18 17 21 21 C 1.38614 * 119.99907 * 185.06249 * 19 18 17 22 22 N 1.31574 * 119.99927 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99828 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47261 * 60.00020 * 23 21 19 25 25 H 1.48505 * 109.46866 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47299 * 299.99482 * 23 21 19 27 27 N 1.30435 * 109.34025 * 359.68804 * 9 8 7 28 28 C 1.39371 * 119.75248 * 0.24646 * 5 4 3 29 29 C 1.38013 * 119.87396 * 359.47393 * 28 5 4 30 30 H 1.08998 * 109.47225 * 90.00049 * 1 2 3 31 31 H 1.09010 * 109.47115 * 209.99927 * 1 2 3 32 32 H 1.09001 * 109.47505 * 329.99382 * 1 2 3 33 33 H 1.08003 * 119.93894 * 359.97438 * 3 2 1 34 34 H 1.07997 * 120.06124 * 180.02562 * 4 3 2 35 35 H 1.08000 * 125.88562 * 0.02562 * 7 6 5 36 36 H 1.07997 * 120.00200 * 179.69611 * 10 9 8 37 37 H 1.08007 * 120.00370 * 0.02562 * 11 10 9 38 38 H 1.07998 * 120.04451 * 359.97438 * 13 12 11 39 39 H 1.07993 * 119.82920 * 179.97438 * 14 13 12 40 40 H 1.07994 * 119.78152 * 180.28226 * 15 14 13 41 41 H 1.08001 * 119.95449 * 180.02562 * 16 15 14 42 42 H 0.96998 * 119.99804 * 179.97438 * 22 21 19 43 43 H 1.07997 * 120.05778 * 179.72595 * 28 5 4 44 44 H 1.08001 * 119.93461 * 180.26910 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1995 0.0000 4 6 3.5761 1.2056 0.0005 5 6 4.2755 0.0000 0.0005 6 6 5.7589 0.0001 0.0005 7 6 6.4802 -1.1415 0.0010 8 16 8.1896 -0.7136 -0.0068 9 6 7.7623 0.9949 -0.0007 10 6 8.7165 2.1071 -0.0025 11 6 10.0414 1.8585 -0.0030 12 6 10.9990 2.9744 -0.0043 13 6 10.5401 4.2953 -0.0044 14 6 11.4433 5.3363 -0.0051 15 6 12.8053 5.0812 -0.0051 16 6 13.2737 3.7819 -0.0049 17 6 12.3805 2.7205 -0.0053 18 8 12.8387 1.4444 -0.0046 19 6 14.1706 1.2724 -0.1207 20 1 14.8274 2.1298 -0.1265 21 6 14.6973 -0.0049 -0.2326 22 7 13.8972 -1.0494 -0.2251 23 14 16.5430 -0.2432 -0.3941 24 1 17.2214 0.3211 0.8003 25 1 16.8476 -1.6930 -0.4982 26 1 17.0272 0.4525 -1.6135 27 7 6.4635 1.1154 -0.0004 28 6 3.5761 -1.2054 -0.0052 29 6 2.1960 -1.1994 0.0001 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3634 -0.8901 0.5139 32 1 -0.3634 0.8899 0.5139 33 1 1.6529 2.1331 -0.0004 34 1 4.1130 2.1426 0.0010 35 1 6.0786 -2.1441 0.0011 36 1 8.3583 3.1259 -0.0033 37 1 10.3998 0.8396 -0.0025 38 1 9.4796 4.4992 -0.0040 39 1 11.0877 6.3560 -0.0057 40 1 13.5051 5.9037 -0.0010 41 1 14.3369 3.5919 -0.0045 42 1 14.2657 -1.9432 -0.3039 43 1 4.1131 -2.1424 -0.0097 44 1 1.6530 -2.1330 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006087430.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:18 Heat of formation + Delta-G solvation = 74.270865 kcal Electronic energy + Delta-G solvation = -26894.352445 eV Core-core repulsion = 23061.980044 eV Total energy + Delta-G solvation = -3832.372401 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 363.103 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.02812 -39.28529 -38.55834 -36.70202 -34.44418 -33.08013 -32.48736 -31.21208 -30.41537 -29.21676 -28.49248 -27.00744 -25.57086 -24.81022 -22.83621 -22.48447 -21.78683 -21.02734 -19.67848 -19.30530 -18.18245 -17.52959 -17.07978 -16.36089 -15.48070 -15.29787 -15.05034 -14.82859 -14.57467 -14.49294 -14.33728 -13.93643 -13.87212 -13.78041 -13.61232 -13.49055 -13.05998 -12.71053 -12.56353 -12.47005 -12.26378 -11.86525 -11.76016 -11.66233 -11.63633 -11.17715 -11.04883 -11.00199 -10.89827 -10.65750 -10.50479 -10.40877 -9.57501 -9.46844 -9.29848 -9.18369 -9.06986 -8.98904 -8.19488 -7.74251 -7.04075 -6.64209 -4.20560 0.36916 0.97102 1.29503 1.55077 1.76379 1.93813 2.23380 2.75435 3.03589 3.05088 3.07755 3.36065 3.81494 3.87236 4.06976 4.49292 4.62483 4.69077 4.84777 4.90985 4.95437 5.02379 5.06464 5.21861 5.32082 5.32970 5.39130 5.41539 5.55644 5.57455 5.63185 5.72212 5.75854 5.85944 5.94626 5.99629 6.04719 6.08795 6.36374 6.44078 6.45736 6.51891 6.61255 6.67928 6.78704 6.84572 6.97484 7.14569 7.20772 7.28273 7.62581 7.79794 7.90883 8.80348 9.45107 10.52106 Molecular weight = 363.10amu Principal moments of inertia in cm(-1) A = 0.014112 B = 0.001980 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.709223 B =14135.732094 C =16098.465003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.088 4.088 3 C -0.123 4.123 4 C -0.083 4.083 5 C -0.020 4.020 6 C 0.110 3.890 7 C -0.270 4.270 8 S 0.105 5.895 9 C 0.144 3.856 10 C -0.164 4.164 11 C 0.003 3.997 12 C -0.161 4.161 13 C -0.048 4.048 14 C -0.218 4.218 15 C -0.058 4.058 16 C -0.234 4.234 17 C 0.172 3.828 18 O -0.161 6.161 19 C -0.394 4.394 20 H 0.095 0.905 21 C 0.043 3.957 22 N -0.851 5.851 23 Si 0.943 3.057 24 H -0.268 1.268 25 H -0.276 1.276 26 H -0.268 1.268 27 N -0.482 5.482 28 C -0.102 4.102 29 C -0.122 4.122 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.123 0.877 34 H 0.134 0.866 35 H 0.173 0.827 36 H 0.140 0.860 37 H 0.127 0.873 38 H 0.120 0.880 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.131 0.869 42 H 0.274 0.726 43 H 0.124 0.876 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.615 1.900 0.267 17.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 C -0.141 4.141 4 C -0.102 4.102 5 C -0.022 4.022 6 C -0.022 4.022 7 C -0.410 4.410 8 S 0.363 5.637 9 C -0.129 4.129 10 C -0.186 4.186 11 C -0.021 4.021 12 C -0.163 4.163 13 C -0.067 4.067 14 C -0.237 4.237 15 C -0.076 4.076 16 C -0.253 4.253 17 C 0.116 3.884 18 O -0.062 6.062 19 C -0.470 4.470 20 H 0.113 0.887 21 C -0.163 4.163 22 N -0.484 5.484 23 Si 0.767 3.233 24 H -0.193 1.193 25 H -0.201 1.201 26 H -0.193 1.193 27 N -0.195 5.195 28 C -0.121 4.121 29 C -0.140 4.140 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.141 0.859 34 H 0.151 0.849 35 H 0.191 0.809 36 H 0.157 0.843 37 H 0.144 0.856 38 H 0.138 0.862 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.149 0.851 42 H 0.084 0.916 43 H 0.142 0.858 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.984 1.251 0.263 17.032 hybrid contribution 0.212 -0.227 -0.078 0.320 sum -16.772 1.024 0.186 16.805 Atomic orbital electron populations 1.20797 0.91274 1.02712 1.02268 1.19995 0.96049 0.93251 0.99515 1.21004 0.93988 0.97552 1.01604 1.21306 0.93676 0.98121 0.97111 1.18151 0.88843 0.93739 1.01509 1.18602 0.93842 0.86992 1.02811 1.26925 0.96029 1.03206 1.14809 1.85504 1.04984 1.04481 1.68683 1.25996 0.92057 0.95127 0.99724 1.20797 0.90375 0.95311 1.12144 1.22149 0.91618 0.98858 0.89486 1.17877 0.89848 0.92659 1.15917 1.20971 0.98855 0.91083 0.95746 1.20565 0.93205 0.98054 1.11831 1.20933 0.95250 0.95786 0.95650 1.21147 1.00407 0.92263 1.11459 1.19461 0.91741 0.85543 0.91657 1.83876 1.25935 1.20372 1.75979 1.21363 0.78945 0.94239 1.52410 0.88715 1.25336 1.00775 0.94149 0.96060 1.70018 1.35651 0.98790 1.43943 0.85743 0.80080 0.78101 0.79374 1.19312 1.20109 1.19312 1.66612 1.04163 1.29834 1.18918 1.21126 0.94128 0.97101 0.99751 1.20882 0.93698 0.97567 1.01885 0.91199 0.91607 0.91559 0.85903 0.84854 0.80943 0.84271 0.85563 0.86221 0.87170 0.87142 0.85129 0.91575 0.85823 0.85905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.01 36.01 0.36 -0.38 16 2 C -0.09 -0.83 5.88 -104.56 -0.62 -1.44 16 3 C -0.12 -1.28 9.68 -39.63 -0.38 -1.66 16 4 C -0.08 -1.05 9.62 -39.24 -0.38 -1.43 16 5 C -0.02 -0.27 5.88 -104.90 -0.62 -0.88 16 6 C 0.11 1.70 6.61 -84.81 -0.56 1.14 16 7 C -0.27 -3.85 10.59 29.60 0.31 -3.53 16 8 S 0.10 1.69 22.23 -107.50 -2.39 -0.70 16 9 C 0.14 2.48 7.40 -14.80 -0.11 2.37 16 10 C -0.16 -2.80 9.59 -37.46 -0.36 -3.16 16 11 C 0.00 0.06 9.21 -37.23 -0.34 -0.29 16 12 C -0.16 -3.22 5.88 -104.89 -0.62 -3.84 16 13 C -0.05 -0.82 9.41 -39.14 -0.37 -1.19 16 14 C -0.22 -3.50 10.02 -39.61 -0.40 -3.90 16 15 C -0.06 -0.98 10.03 -39.50 -0.40 -1.37 16 16 C -0.23 -4.71 9.16 -39.45 -0.36 -5.07 16 17 C 0.17 3.89 6.66 -38.56 -0.26 3.63 16 18 O -0.16 -4.22 8.94 0.66 0.01 -4.21 16 19 C -0.39 -10.22 9.48 30.87 0.29 -9.93 16 20 H 0.10 2.26 5.21 -52.48 -0.27 1.98 16 21 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 22 N -0.85 -23.31 13.67 55.48 0.76 -22.55 16 23 Si 0.94 19.28 29.55 -169.99 -5.02 14.26 16 24 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 25 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 26 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 27 N -0.48 -8.18 9.90 -8.22 -0.08 -8.26 16 28 C -0.10 -1.13 9.47 -39.24 -0.37 -1.50 16 29 C -0.12 -1.18 9.68 -39.63 -0.38 -1.56 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.37 8.08 -51.92 -0.42 -0.05 16 32 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 33 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 34 H 0.13 1.73 7.67 -52.49 -0.40 1.32 16 35 H 0.17 1.92 6.81 -52.49 -0.36 1.56 16 36 H 0.14 2.14 6.07 -52.49 -0.32 1.82 16 37 H 0.13 2.66 6.71 -52.48 -0.35 2.30 16 38 H 0.12 1.71 6.17 -52.49 -0.32 1.39 16 39 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 41 H 0.13 2.59 5.64 -52.49 -0.30 2.30 16 42 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.12 1.15 6.59 -52.49 -0.35 0.81 16 44 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 391.11 15.07 5.89 5.89 Total: -1.00 -29.15 391.11 -11.24 -40.39 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -4.76 Total: 8.16 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: -5.65 Total: -32.99 kcal Atomic # 7 Polarization: -31.49 SS G_CDS: 0.68 Total: -30.81 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: 0.01 Total: -4.21 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.26 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.39 Total: -0.70 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.15 -11.24 -40.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006087430.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.665 kcal (2) G-P(sol) polarization free energy of solvation -29.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds