Wall clock time and date at job start Tue Mar 31 2020 06:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86793 * 120.00397 * 2 1 4 4 H 1.48508 * 109.46982 * 269.99896 * 3 2 1 5 5 H 1.48501 * 109.47174 * 29.99830 * 3 2 1 6 6 H 1.48503 * 109.47657 * 149.99983 * 3 2 1 7 7 C 1.37882 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00442 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99827 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46886 * 179.97438 * 9 7 2 11 11 N 1.46509 * 109.47020 * 179.97438 * 10 9 7 12 12 C 1.34381 * 124.27523 * 270.35683 * 11 10 9 13 13 O 1.21689 * 126.06252 * 359.97438 * 12 11 10 14 14 C 1.47670 * 107.87606 * 180.14483 * 12 11 10 15 15 N 1.31124 * 127.51472 * 179.82442 * 14 12 11 16 16 N 1.40102 * 119.99423 * 173.05630 * 15 14 12 17 17 C 1.34780 * 119.99701 * 174.19324 * 16 15 14 18 18 O 1.21536 * 120.00121 * 359.97438 * 17 16 15 19 19 C 1.47733 * 119.99836 * 180.02562 * 17 16 15 20 20 C 1.40080 * 120.56383 * 179.71607 * 19 17 16 21 21 C 1.38342 * 118.28117 * 179.75611 * 20 19 17 22 22 C 1.38358 * 119.31235 * 0.54700 * 21 20 19 23 23 N 1.31938 * 121.09208 * 359.69170 * 22 21 20 24 24 C 1.31690 * 121.88176 * 0.02692 * 23 22 21 25 25 C 1.48138 * 104.95873 * 359.56410 * 14 12 11 26 26 C 1.39041 * 133.20690 * 180.24210 * 25 14 12 27 27 C 1.38056 * 119.73362 * 180.02562 * 26 25 14 28 28 C 1.38482 * 120.06761 * 0.02562 * 27 26 25 29 29 C 1.38020 * 120.62044 * 0.02562 * 28 27 26 30 30 C 1.39051 * 124.27181 * 90.00348 * 11 10 9 31 31 H 0.97003 * 119.99819 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.47229 * 60.00188 * 9 7 2 33 33 H 1.08995 * 109.47266 * 299.99942 * 9 7 2 34 34 H 1.09003 * 109.47658 * 60.00229 * 10 9 7 35 35 H 1.08996 * 109.47431 * 299.99584 * 10 9 7 36 36 H 0.96994 * 120.00217 * 353.91645 * 16 15 14 37 37 H 1.08001 * 120.85595 * 0.02562 * 20 19 17 38 38 H 1.08005 * 120.34303 * 180.23696 * 21 20 19 39 39 H 1.08003 * 119.46023 * 179.72305 * 22 21 20 40 40 H 1.08000 * 119.71485 * 180.02562 * 24 23 22 41 41 H 1.08002 * 120.13851 * 0.03276 * 26 25 14 42 42 H 1.07994 * 119.97255 * 180.02562 * 27 26 25 43 43 H 1.08002 * 119.69193 * 179.97438 * 28 27 26 44 44 H 1.08001 * 119.93710 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1295 0.0014 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0023 11 7 5.4865 -2.6367 0.0022 12 6 6.2432 -2.6308 -1.1082 13 8 5.8337 -2.6250 -2.2541 14 6 7.6599 -2.6366 -0.6914 15 7 8.7195 -2.6368 -1.4638 16 7 9.9954 -2.4961 -0.9024 17 6 11.0902 -2.6132 -1.6797 18 8 10.9706 -2.8413 -2.8675 19 6 12.4356 -2.4655 -1.0877 20 6 13.5816 -2.5907 -1.8834 21 6 14.8177 -2.4384 -1.2811 22 6 14.8824 -2.1811 0.0768 23 7 13.7860 -2.0731 0.8028 24 6 12.5866 -2.2044 0.2751 25 6 7.6227 -2.6358 0.7895 26 6 8.6120 -2.6353 1.7666 27 6 8.2567 -2.6350 3.1006 28 6 6.9201 -2.6358 3.4627 29 6 5.9310 -2.6374 2.5001 30 6 6.2695 -2.6359 1.1513 31 1 -0.4850 0.8401 -0.0004 32 1 3.8745 -0.6801 0.8912 33 1 3.8752 -0.6806 -0.8888 34 1 3.6584 -3.1512 -0.8875 35 1 3.6578 -3.1499 0.8925 36 1 10.0907 -2.3105 0.0448 37 1 13.5021 -2.7966 -2.9406 38 1 15.7230 -2.5244 -1.8639 39 1 15.8463 -2.0662 0.5504 40 1 11.7125 -2.1088 0.9022 41 1 9.6541 -2.6350 1.4831 42 1 9.0219 -2.6342 3.8627 43 1 6.6490 -2.6360 4.5082 44 1 4.8920 -2.6384 2.7949 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006231325.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:23 Heat of formation + Delta-G solvation = 71.023749 kcal Electronic energy + Delta-G solvation = -30866.112773 eV Core-core repulsion = 26557.713536 eV Total energy + Delta-G solvation = -4308.399237 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.132 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.78045 -41.13760 -39.48964 -38.50469 -36.88877 -36.04554 -34.02283 -33.20928 -33.00082 -32.05726 -31.01119 -30.67117 -29.11139 -26.93431 -25.29135 -24.39260 -24.01437 -22.73952 -22.10536 -21.30677 -21.11109 -20.11680 -18.71202 -17.96870 -17.50809 -17.18634 -17.09012 -16.52117 -16.08080 -16.03724 -15.72030 -15.58109 -15.48800 -14.56221 -14.42767 -14.34848 -14.28785 -14.13466 -13.92252 -13.74745 -13.24988 -13.14714 -12.93352 -12.85735 -12.57444 -12.49425 -11.94111 -11.80563 -11.16907 -11.06454 -11.01987 -10.84033 -10.57769 -10.33396 -10.15752 -10.12712 -10.01698 -9.94146 -9.89855 -9.83407 -9.40506 -8.85782 -8.65249 -7.96375 -6.16110 -4.16911 -0.17912 0.16996 0.56030 1.01651 1.55021 1.64707 2.33061 2.75872 3.05780 3.24367 3.25707 3.33046 3.35631 3.51075 3.53112 3.75876 3.87903 4.09525 4.15267 4.28311 4.32238 4.35826 4.35931 4.61906 4.71076 4.74191 4.93609 5.03036 5.17477 5.20741 5.30284 5.35179 5.41640 5.47191 5.58917 5.83215 5.86973 5.97189 5.98855 6.20027 6.28533 6.32610 6.44495 6.54059 6.79819 6.93523 7.04908 7.17553 7.22529 7.57615 7.71151 7.87541 8.35040 8.85176 9.44705 10.96385 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.013956 B = 0.002285 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.891249 B =12253.122173 C =12981.925097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.074 3.926 3 Si 0.877 3.123 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.525 4.525 8 H 0.077 0.923 9 C -0.026 4.026 10 C 0.123 3.877 11 N -0.537 5.537 12 C 0.582 3.418 13 O -0.459 6.459 14 C 0.089 3.911 15 N -0.130 5.130 16 N -0.575 5.575 17 C 0.580 3.420 18 O -0.484 6.484 19 C -0.185 4.185 20 C -0.009 4.009 21 C -0.176 4.176 22 C 0.126 3.874 23 N -0.482 5.482 24 C 0.136 3.864 25 C -0.176 4.176 26 C -0.056 4.056 27 C -0.149 4.149 28 C -0.060 4.060 29 C -0.132 4.132 30 C 0.195 3.805 31 H 0.265 0.735 32 H 0.022 0.978 33 H 0.020 0.980 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.390 0.610 37 H 0.153 0.847 38 H 0.148 0.852 39 H 0.166 0.834 40 H 0.155 0.845 41 H 0.112 0.888 42 H 0.134 0.866 43 H 0.137 0.863 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.000 -6.362 8.033 31.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.563 4.563 8 H 0.095 0.905 9 C -0.064 4.064 10 C 0.004 3.996 11 N -0.257 5.257 12 C 0.366 3.634 13 O -0.326 6.326 14 C -0.102 4.102 15 N 0.059 4.941 16 N -0.322 5.322 17 C 0.367 3.633 18 O -0.354 6.354 19 C -0.192 4.192 20 C -0.036 4.036 21 C -0.195 4.195 22 C -0.030 4.030 23 N -0.191 5.191 24 C -0.023 4.023 25 C -0.183 4.183 26 C -0.077 4.077 27 C -0.168 4.168 28 C -0.080 4.080 29 C -0.153 4.153 30 C 0.095 3.905 31 H 0.075 0.925 32 H 0.041 0.959 33 H 0.038 0.962 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.233 0.767 37 H 0.171 0.829 38 H 0.166 0.834 39 H 0.183 0.817 40 H 0.172 0.828 41 H 0.130 0.870 42 H 0.152 0.848 43 H 0.155 0.845 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 29.857 -6.303 6.289 31.156 hybrid contribution 0.140 0.978 0.405 1.068 sum 29.997 -5.324 6.694 31.192 Atomic orbital electron populations 1.69889 1.06220 1.27161 1.50089 1.24940 0.94720 0.99096 0.94142 0.86816 0.80258 0.83653 0.78832 1.20064 1.21137 1.19106 1.20836 0.88282 0.94907 1.52282 0.90507 1.19944 0.97936 0.91190 0.97378 1.22092 0.71759 1.01706 1.04015 1.45860 1.08878 1.67209 1.03771 1.17366 0.83802 0.77573 0.84703 1.90929 1.78018 1.45196 1.18471 1.23690 0.94475 1.01226 0.90843 1.75556 0.88535 1.06513 1.23458 1.47180 1.02563 1.70187 1.12230 1.17915 0.82407 0.76756 0.86173 1.90843 1.86088 1.44041 1.14459 1.20783 0.93435 1.08857 0.96086 1.21799 0.90553 0.90088 1.01139 1.22242 0.98666 1.02002 0.96621 1.23137 0.97444 0.91376 0.91043 1.67744 0.98369 1.13395 1.39560 1.22979 0.95973 0.92146 0.91200 1.19402 0.94394 1.12749 0.91705 1.20376 0.96285 0.98657 0.92360 1.20949 0.96741 1.04121 0.94989 1.21079 0.92043 0.95370 0.99480 1.20553 1.01468 1.04471 0.88843 1.18349 0.88895 0.94493 0.88812 0.92464 0.95940 0.96202 0.88975 0.89344 0.76654 0.82945 0.83420 0.81708 0.82816 0.87017 0.84826 0.84532 0.84069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.82 13.96 55.43 0.77 -26.04 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 21.48 27.47 -169.99 -4.67 16.82 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 7 C -0.52 -14.24 9.66 -34.44 -0.33 -14.58 16 8 H 0.08 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.03 -0.60 4.36 -27.88 -0.12 -0.73 16 10 C 0.12 2.30 5.72 -4.04 -0.02 2.28 16 11 N -0.54 -9.20 2.73 -114.48 -0.31 -9.52 16 12 C 0.58 10.81 8.07 -12.59 -0.10 10.70 16 13 O -0.46 -9.99 17.71 5.20 0.09 -9.90 16 14 C 0.09 1.40 7.55 -80.25 -0.61 0.80 16 15 N -0.13 -2.08 11.19 34.75 0.39 -1.69 16 16 N -0.57 -6.96 6.18 30.50 0.19 -6.77 16 17 C 0.58 7.11 7.89 -12.38 -0.10 7.02 16 18 O -0.48 -7.73 16.75 5.33 0.09 -7.64 16 19 C -0.18 -1.61 5.89 -104.83 -0.62 -2.22 16 20 C -0.01 -0.07 9.72 -38.85 -0.38 -0.44 16 21 C -0.18 -0.82 10.10 -39.50 -0.40 -1.22 16 22 C 0.13 0.65 11.17 -17.46 -0.20 0.46 16 23 N -0.48 -3.58 10.35 -12.89 -0.13 -3.71 16 24 C 0.14 0.99 10.71 -17.11 -0.18 0.81 16 25 C -0.18 -2.28 6.15 -104.85 -0.64 -2.93 16 26 C -0.06 -0.52 9.42 -39.35 -0.37 -0.89 16 27 C -0.15 -1.15 10.05 -39.56 -0.40 -1.55 16 28 C -0.06 -0.52 10.01 -39.57 -0.40 -0.91 16 29 C -0.13 -1.53 9.78 -39.35 -0.39 -1.91 16 30 C 0.20 2.77 6.73 -83.59 -0.56 2.21 16 31 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.02 0.51 7.20 -51.93 -0.37 0.13 16 33 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 34 H 0.09 1.79 7.97 -51.93 -0.41 1.37 16 35 H 0.09 1.45 7.74 -51.93 -0.40 1.05 16 36 H 0.39 3.49 3.16 -182.60 -0.58 2.92 16 37 H 0.15 1.01 7.74 -52.49 -0.41 0.60 16 38 H 0.15 0.25 8.06 -52.48 -0.42 -0.17 16 39 H 0.17 0.34 8.06 -52.48 -0.42 -0.08 16 40 H 0.15 0.77 5.94 -52.49 -0.31 0.46 16 41 H 0.11 0.72 5.01 -52.49 -0.26 0.46 16 42 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 43 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 44 H 0.14 1.57 7.80 -52.49 -0.41 1.16 16 LS Contribution 384.19 15.07 5.79 5.79 Total: -1.00 -36.53 384.19 -8.53 -45.06 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -4.83 Total: -1.27 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -5.91 Total: -1.13 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: 0.90 Total: -47.73 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: 0.18 Total: -17.54 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.53 -8.53 -45.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006231325.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.081 kcal (2) G-P(sol) polarization free energy of solvation -36.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds