Wall clock time and date at job start Tue Mar 31 2020 06:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86793 * 120.00397 * 2 1 4 4 H 1.48508 * 109.46982 * 269.99896 * 3 2 1 5 5 H 1.48501 * 109.47174 * 29.99830 * 3 2 1 6 6 H 1.48503 * 109.47657 * 149.99983 * 3 2 1 7 7 C 1.37882 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00442 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99827 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46886 * 179.97438 * 9 7 2 11 11 N 1.46509 * 109.47020 * 179.97438 * 10 9 7 12 12 C 1.34381 * 124.27523 * 270.35683 * 11 10 9 13 13 O 1.21689 * 126.06252 * 359.97438 * 12 11 10 14 14 C 1.47670 * 107.87606 * 180.14483 * 12 11 10 15 15 N 1.31124 * 127.51472 * 179.82442 * 14 12 11 16 16 N 1.40102 * 119.99423 * 173.05630 * 15 14 12 17 17 C 1.34780 * 119.99701 * 174.19324 * 16 15 14 18 18 O 1.21536 * 120.00121 * 359.97438 * 17 16 15 19 19 C 1.47733 * 119.99836 * 180.02562 * 17 16 15 20 20 C 1.40080 * 120.56383 * 179.71607 * 19 17 16 21 21 C 1.38342 * 118.28117 * 179.75611 * 20 19 17 22 22 C 1.38358 * 119.31235 * 0.54700 * 21 20 19 23 23 N 1.31938 * 121.09208 * 359.69170 * 22 21 20 24 24 C 1.31690 * 121.88176 * 0.02692 * 23 22 21 25 25 C 1.48138 * 104.95873 * 359.56410 * 14 12 11 26 26 C 1.39041 * 133.20690 * 180.24210 * 25 14 12 27 27 C 1.38056 * 119.73362 * 180.02562 * 26 25 14 28 28 C 1.38482 * 120.06761 * 0.02562 * 27 26 25 29 29 C 1.38020 * 120.62044 * 0.02562 * 28 27 26 30 30 C 1.39051 * 124.27181 * 90.00348 * 11 10 9 31 31 H 0.97003 * 119.99819 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.47229 * 60.00188 * 9 7 2 33 33 H 1.08995 * 109.47266 * 299.99942 * 9 7 2 34 34 H 1.09003 * 109.47658 * 60.00229 * 10 9 7 35 35 H 1.08996 * 109.47431 * 299.99584 * 10 9 7 36 36 H 0.96994 * 120.00217 * 353.91645 * 16 15 14 37 37 H 1.08001 * 120.85595 * 0.02562 * 20 19 17 38 38 H 1.08005 * 120.34303 * 180.23696 * 21 20 19 39 39 H 1.08003 * 119.46023 * 179.72305 * 22 21 20 40 40 H 1.08000 * 119.71485 * 180.02562 * 24 23 22 41 41 H 1.08002 * 120.13851 * 0.03276 * 26 25 14 42 42 H 1.07994 * 119.97255 * 180.02562 * 27 26 25 43 43 H 1.08002 * 119.69193 * 179.97438 * 28 27 26 44 44 H 1.08001 * 119.93710 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1295 0.0014 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0023 11 7 5.4865 -2.6367 0.0022 12 6 6.2432 -2.6308 -1.1082 13 8 5.8337 -2.6250 -2.2541 14 6 7.6599 -2.6366 -0.6914 15 7 8.7195 -2.6368 -1.4638 16 7 9.9954 -2.4961 -0.9024 17 6 11.0902 -2.6132 -1.6797 18 8 10.9706 -2.8413 -2.8675 19 6 12.4356 -2.4655 -1.0877 20 6 13.5816 -2.5907 -1.8834 21 6 14.8177 -2.4384 -1.2811 22 6 14.8824 -2.1811 0.0768 23 7 13.7860 -2.0731 0.8028 24 6 12.5866 -2.2044 0.2751 25 6 7.6227 -2.6358 0.7895 26 6 8.6120 -2.6353 1.7666 27 6 8.2567 -2.6350 3.1006 28 6 6.9201 -2.6358 3.4627 29 6 5.9310 -2.6374 2.5001 30 6 6.2695 -2.6359 1.1513 31 1 -0.4850 0.8401 -0.0004 32 1 3.8745 -0.6801 0.8912 33 1 3.8752 -0.6806 -0.8888 34 1 3.6584 -3.1512 -0.8875 35 1 3.6578 -3.1499 0.8925 36 1 10.0907 -2.3105 0.0448 37 1 13.5021 -2.7966 -2.9406 38 1 15.7230 -2.5244 -1.8639 39 1 15.8463 -2.0662 0.5504 40 1 11.7125 -2.1088 0.9022 41 1 9.6541 -2.6350 1.4831 42 1 9.0219 -2.6342 3.8627 43 1 6.6490 -2.6360 4.5082 44 1 4.8920 -2.6384 2.7949 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006231325.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:22 Heat of formation + Delta-G solvation = 45.778947 kcal Electronic energy + Delta-G solvation = -30867.207470 eV Core-core repulsion = 26557.713536 eV Total energy + Delta-G solvation = -4309.493934 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.132 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.91890 -41.82801 -40.29558 -39.62899 -38.03365 -37.28009 -35.63507 -34.45302 -33.68184 -33.14651 -32.20526 -31.52713 -30.27764 -28.27428 -26.37672 -25.36077 -24.61197 -23.80610 -23.06232 -22.75968 -22.16958 -21.31750 -19.57897 -19.24446 -18.74353 -18.28862 -17.95701 -17.40119 -17.28668 -17.10500 -16.65819 -16.58445 -16.40850 -16.27549 -15.42899 -15.38772 -15.11663 -14.93745 -14.85613 -14.79269 -14.74195 -14.25764 -14.23720 -13.98079 -13.54140 -13.31526 -13.20615 -13.05000 -12.85954 -12.58958 -12.20368 -12.03605 -11.85629 -11.77376 -11.58893 -11.38294 -11.24644 -11.10754 -10.96279 -10.83901 -10.62692 -10.36888 -9.75597 -9.05676 -8.35538 -6.40507 -1.13730 -0.51610 0.10192 0.18344 0.58571 0.66424 1.29758 1.32540 1.41861 1.44261 1.56857 1.82087 2.29219 2.69376 2.70660 2.71834 2.85892 2.99522 3.16751 3.43294 3.47228 3.61779 3.68005 3.81298 3.90377 3.92841 4.05991 4.28497 4.31148 4.34247 4.38231 4.48157 4.55989 4.61467 4.72145 4.88027 4.88200 5.00594 5.07709 5.18194 5.26384 5.33677 5.45803 5.47716 5.49220 5.58559 5.65663 5.84831 5.99814 6.15886 6.50100 6.66209 6.70678 6.79297 7.24239 8.80078 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.013956 B = 0.002285 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.891249 B =12253.122173 C =12981.925097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.016 3.984 3 Si 0.939 3.061 4 H -0.280 1.280 5 H -0.274 1.274 6 H -0.249 1.249 7 C -0.528 4.528 8 H 0.049 0.951 9 C -0.017 4.017 10 C 0.134 3.866 11 N -0.537 5.537 12 C 0.568 3.432 13 O -0.515 6.515 14 C 0.087 3.913 15 N -0.165 5.165 16 N -0.560 5.560 17 C 0.580 3.420 18 O -0.533 6.533 19 C -0.203 4.203 20 C -0.021 4.021 21 C -0.164 4.164 22 C 0.131 3.869 23 N -0.500 5.500 24 C 0.139 3.861 25 C -0.182 4.182 26 C -0.053 4.053 27 C -0.125 4.125 28 C -0.049 4.049 29 C -0.138 4.138 30 C 0.154 3.846 31 H 0.269 0.731 32 H 0.034 0.966 33 H 0.000 1.000 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.406 0.594 37 H 0.148 0.852 38 H 0.181 0.819 39 H 0.200 0.800 40 H 0.174 0.826 41 H 0.141 0.859 42 H 0.180 0.820 43 H 0.174 0.826 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.705 -5.724 12.136 37.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.182 4.182 3 Si 0.763 3.237 4 H -0.206 1.206 5 H -0.200 1.200 6 H -0.172 1.172 7 C -0.567 4.567 8 H 0.067 0.933 9 C -0.055 4.055 10 C 0.014 3.986 11 N -0.258 5.258 12 C 0.354 3.646 13 O -0.387 6.387 14 C -0.103 4.103 15 N 0.023 4.977 16 N -0.309 5.309 17 C 0.370 3.630 18 O -0.407 6.407 19 C -0.210 4.210 20 C -0.047 4.047 21 C -0.183 4.183 22 C -0.024 4.024 23 N -0.208 5.208 24 C -0.019 4.019 25 C -0.188 4.188 26 C -0.074 4.074 27 C -0.143 4.143 28 C -0.068 4.068 29 C -0.159 4.159 30 C 0.056 3.944 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.018 0.982 34 H 0.093 0.907 35 H 0.130 0.870 36 H 0.252 0.748 37 H 0.166 0.834 38 H 0.199 0.801 39 H 0.217 0.783 40 H 0.191 0.809 41 H 0.158 0.842 42 H 0.197 0.803 43 H 0.192 0.808 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 34.607 -5.672 10.487 36.603 hybrid contribution -1.154 0.698 -0.734 1.535 sum 33.453 -4.974 9.754 35.199 Atomic orbital electron populations 1.70016 1.07879 1.28257 1.51780 1.25802 0.95520 1.02873 0.94029 0.85831 0.79752 0.79395 0.78718 1.20588 1.19963 1.17213 1.21135 0.90514 0.93865 1.51157 0.93308 1.19776 0.95174 0.93868 0.96699 1.21721 0.73452 0.99031 1.04348 1.45626 1.08003 1.67247 1.04896 1.17903 0.85500 0.76881 0.84364 1.90871 1.79237 1.48183 1.20387 1.23304 0.92858 1.01667 0.92491 1.75448 0.90093 1.06835 1.25282 1.47096 1.01091 1.69640 1.13066 1.18636 0.83422 0.75240 0.85671 1.90813 1.86781 1.46516 1.16581 1.20589 0.91447 1.11782 0.97134 1.21983 0.91268 0.90292 1.01175 1.22577 0.98669 1.00287 0.96780 1.23794 0.98209 0.89202 0.91235 1.67845 0.98751 1.14188 1.40031 1.23213 0.96942 0.91291 0.90495 1.19451 0.94887 1.14038 0.90408 1.20779 0.96862 0.97371 0.92363 1.21524 0.97470 1.00337 0.94962 1.21577 0.91750 0.92987 1.00519 1.20825 1.02590 1.04362 0.88130 1.18669 0.88935 0.97953 0.88823 0.92228 0.94807 0.98155 0.90737 0.87003 0.74805 0.83404 0.80130 0.78310 0.80919 0.84214 0.80268 0.80850 0.84127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.88 13.96 21.45 0.30 -57.58 16 2 C 0.02 0.94 5.47 84.66 0.46 1.40 16 3 Si 0.94 44.75 27.47 68.60 1.88 46.63 16 4 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 5 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.25 -11.01 6.54 99.48 0.65 -10.36 16 7 C -0.53 -29.71 9.66 25.60 0.25 -29.47 16 8 H 0.05 2.94 7.99 -2.91 -0.02 2.92 16 9 C -0.02 -0.80 4.36 29.85 0.13 -0.67 16 10 C 0.13 5.26 5.72 86.38 0.49 5.76 16 11 N -0.54 -19.14 2.73 -634.56 -1.73 -20.88 16 12 C 0.57 22.58 8.07 86.80 0.70 23.28 16 13 O -0.51 -24.53 17.71 -4.31 -0.08 -24.61 16 14 C 0.09 2.84 7.55 44.37 0.33 3.18 16 15 N -0.16 -5.50 11.19 -43.99 -0.49 -5.99 16 16 N -0.56 -13.40 6.18 -175.70 -1.09 -14.49 16 17 C 0.58 14.40 7.89 86.75 0.68 15.08 16 18 O -0.53 -17.97 16.75 -3.83 -0.06 -18.03 16 19 C -0.20 -3.29 5.89 -20.00 -0.12 -3.40 16 20 C -0.02 -0.27 9.72 22.74 0.22 -0.05 16 21 C -0.16 -0.98 10.10 22.32 0.23 -0.76 16 22 C 0.13 0.82 11.17 84.71 0.95 1.77 16 23 N -0.50 -5.61 10.35 -194.70 -2.01 -7.62 16 24 C 0.14 1.64 10.71 85.04 0.91 2.55 16 25 C -0.18 -4.48 6.15 -20.01 -0.12 -4.61 16 26 C -0.05 -0.77 9.42 22.42 0.21 -0.56 16 27 C -0.12 -1.18 10.05 22.28 0.22 -0.95 16 28 C -0.05 -0.59 10.01 22.28 0.22 -0.37 16 29 C -0.14 -2.84 9.78 22.42 0.22 -2.62 16 30 C 0.15 4.26 6.73 38.64 0.26 4.52 16 31 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 32 H 0.03 1.51 7.20 -2.38 -0.02 1.49 16 33 H 0.00 0.00 7.57 -2.39 -0.02 -0.01 16 34 H 0.07 3.14 7.97 -2.39 -0.02 3.12 16 35 H 0.11 3.78 7.74 -2.39 -0.02 3.76 16 36 H 0.41 6.50 3.16 -213.33 -0.67 5.82 16 37 H 0.15 1.96 7.74 -2.91 -0.02 1.93 16 38 H 0.18 -0.15 8.06 -2.91 -0.02 -0.18 16 39 H 0.20 -0.20 8.06 -2.91 -0.02 -0.22 16 40 H 0.17 1.10 5.94 -2.91 -0.02 1.08 16 41 H 0.14 1.16 5.01 -2.91 -0.01 1.14 16 42 H 0.18 0.23 8.06 -2.91 -0.02 0.20 16 43 H 0.17 0.88 8.06 -2.91 -0.02 0.85 16 44 H 0.14 2.84 7.80 -2.91 -0.02 2.82 16 Total: -1.00 -87.33 384.19 3.33 -84.01 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: 0.35 Total: 4.46 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 6.25 Total: 14.10 kcal Atomic # 7 Polarization: -101.54 SS G_CDS: -5.02 Total: -106.56 kcal Atomic # 8 Polarization: -42.50 SS G_CDS: -0.14 Total: -42.64 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.63 kcal Total: -87.33 3.33 -84.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006231325.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.786 kcal (2) G-P(sol) polarization free energy of solvation -87.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds