Wall clock time and date at job start Tue Mar 31 2020 06:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99708 * 2 1 4 4 H 1.48508 * 109.47098 * 89.99783 * 3 2 1 5 5 H 1.48494 * 109.47386 * 209.99803 * 3 2 1 6 6 H 1.48501 * 109.47362 * 330.00409 * 3 2 1 7 7 C 1.37868 * 120.00298 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00451 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00167 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47140 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.46633 * 179.97438 * 10 9 7 12 12 C 1.34385 * 124.27523 * 269.69910 * 11 10 9 13 13 O 1.21688 * 126.06623 * 0.02562 * 12 11 10 14 14 C 1.47689 * 107.87522 * 179.91310 * 12 11 10 15 15 N 1.31117 * 127.51718 * 180.10125 * 14 12 11 16 16 N 1.40103 * 119.99615 * 186.66617 * 15 14 12 17 17 C 1.34776 * 119.99852 * 186.07277 * 16 15 14 18 18 O 1.21504 * 120.00071 * 359.97438 * 17 16 15 19 19 C 1.48042 * 119.99994 * 180.02562 * 17 16 15 20 20 C 1.39871 * 120.92873 * 359.71901 * 19 17 16 21 21 C 1.38135 * 118.99565 * 179.77519 * 20 19 17 22 22 N 1.31815 * 120.89796 * 0.51045 * 21 20 19 23 23 C 1.31821 * 122.06732 * 359.74241 * 22 21 20 24 24 C 1.38135 * 120.89905 * 359.97438 * 23 22 21 25 25 C 1.48133 * 104.95944 * 0.34030 * 14 12 11 26 26 C 1.39043 * 133.21443 * 179.82605 * 25 14 12 27 27 C 1.38056 * 119.73475 * 180.02562 * 26 25 14 28 28 C 1.38485 * 120.07057 * 359.95428 * 27 26 25 29 29 C 1.38024 * 120.61700 * 0.02562 * 28 27 26 30 30 C 1.39047 * 124.27750 * 90.00855 * 11 10 9 31 31 H 0.97005 * 119.99944 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46992 * 300.00059 * 9 7 2 33 33 H 1.09005 * 109.46870 * 59.99779 * 9 7 2 34 34 H 1.08993 * 109.47250 * 299.99937 * 10 9 7 35 35 H 1.09005 * 109.46966 * 60.00394 * 10 9 7 36 36 H 0.96997 * 119.99895 * 6.07380 * 16 15 14 37 37 H 1.08004 * 120.49979 * 0.02562 * 20 19 17 38 38 H 1.08000 * 119.54807 * 180.27437 * 21 20 19 39 39 H 1.08002 * 119.55109 * 180.02562 * 23 22 21 40 40 H 1.08002 * 120.49809 * 180.02562 * 24 23 22 41 41 H 1.07999 * 120.13363 * 0.03708 * 26 25 14 42 42 H 1.08004 * 119.96834 * 179.97438 * 27 26 25 43 43 H 1.07992 * 119.68703 * 180.02562 * 28 27 26 44 44 H 1.08003 * 119.92878 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4464 2.6527 -0.6999 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5129 -4.9307 0.0012 12 6 1.1399 -5.5887 1.1119 13 8 1.3498 -5.2367 2.2577 14 6 0.4276 -6.8137 0.6956 15 7 -0.1006 -7.7319 1.4682 16 7 -0.6209 -8.9053 0.9067 17 6 -1.2727 -9.7928 1.6839 18 8 -1.4085 -9.5755 2.8716 19 6 -1.8220 -11.0329 1.0907 20 6 -1.6810 -11.3003 -0.2750 21 6 -2.2050 -12.4720 -0.7855 22 7 -2.8387 -13.3260 -0.0066 23 6 -2.9983 -13.1106 1.2841 24 6 -2.5013 -11.9674 1.8793 25 6 0.4453 -6.7816 -0.7853 26 6 -0.0498 -7.6384 -1.7621 27 6 0.1276 -7.3310 -3.0963 28 6 0.7952 -6.1731 -3.4588 29 6 1.2899 -5.3163 -2.4964 30 6 1.1211 -5.6094 -1.1475 31 1 -0.4850 -0.8401 0.0004 32 1 0.6241 -2.5567 0.8903 33 1 0.6248 -2.5571 -0.8897 34 1 2.8721 -3.6042 -0.8894 35 1 2.8721 -3.6042 0.8906 36 1 -0.5121 -9.0789 -0.0414 37 1 -1.1665 -10.6031 -0.9198 38 1 -2.0973 -12.6896 -1.8379 39 1 -3.5242 -13.8381 1.8845 40 1 -2.6354 -11.7976 2.9374 41 1 -0.5711 -8.5406 -1.4783 42 1 -0.2551 -7.9940 -3.8582 43 1 0.9301 -5.9385 -4.5043 44 1 1.8092 -4.4165 -2.7916 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006231327.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:31 Heat of formation + Delta-G solvation = 64.211364 kcal Electronic energy + Delta-G solvation = -30783.350162 eV Core-core repulsion = 26474.655518 eV Total energy + Delta-G solvation = -4308.694644 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.132 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.79318 -41.11687 -39.53948 -38.52172 -36.91503 -36.06546 -34.23799 -33.60832 -32.61234 -31.87256 -30.88634 -30.68779 -28.85885 -26.70281 -25.22616 -24.23680 -23.91578 -22.81831 -22.15625 -21.72523 -21.15275 -20.28182 -18.81814 -17.95735 -17.23023 -17.06171 -16.84797 -16.35710 -16.22731 -16.03195 -15.95638 -15.60583 -15.49578 -14.71950 -14.46230 -14.33430 -14.28888 -14.23417 -13.98906 -13.79285 -13.21092 -13.14859 -12.90721 -12.62238 -12.45153 -12.35918 -12.06549 -11.72016 -11.07049 -10.98634 -10.93682 -10.85873 -10.55238 -10.36178 -10.21218 -10.17817 -10.12717 -10.01086 -9.88230 -9.84080 -8.89689 -8.77375 -8.44557 -7.96522 -6.48574 -4.20501 -0.16104 0.21661 0.45986 0.99298 1.52012 1.62226 2.35462 2.73509 3.06047 3.26195 3.38994 3.41715 3.49645 3.57017 3.64020 3.73033 3.80679 4.05749 4.14515 4.26714 4.33651 4.42621 4.46090 4.60879 4.69009 4.87023 5.00343 5.12505 5.15601 5.18201 5.27842 5.29614 5.36848 5.45104 5.56226 5.81023 5.94358 5.95068 5.99018 6.17336 6.29058 6.32863 6.41632 6.53153 6.78822 6.95246 7.16550 7.28108 7.30381 7.66870 7.81860 8.00581 8.30657 8.72425 9.52975 10.92169 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.016636 B = 0.002098 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.721400 B =13344.531716 C =14425.229891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.019 3.981 3 Si 1.074 2.926 4 H -0.286 1.286 5 H -0.287 1.287 6 H -0.283 1.283 7 C -0.606 4.606 8 H 0.054 0.946 9 C -0.003 4.003 10 C 0.121 3.879 11 N -0.536 5.536 12 C 0.582 3.418 13 O -0.459 6.459 14 C 0.091 3.909 15 N -0.131 5.131 16 N -0.573 5.573 17 C 0.574 3.426 18 O -0.477 6.477 19 C -0.082 4.082 20 C -0.145 4.145 21 C 0.102 3.898 22 N -0.466 5.466 23 C 0.102 3.898 24 C -0.109 4.109 25 C -0.176 4.176 26 C -0.056 4.056 27 C -0.150 4.150 28 C -0.059 4.059 29 C -0.132 4.132 30 C 0.197 3.803 31 H 0.269 0.731 32 H 0.016 0.984 33 H 0.014 0.986 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.391 0.609 37 H 0.136 0.864 38 H 0.167 0.833 39 H 0.168 0.832 40 H 0.154 0.846 41 H 0.112 0.888 42 H 0.134 0.866 43 H 0.137 0.863 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.292 -25.954 -9.179 27.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.186 4.186 3 Si 0.902 3.098 4 H -0.213 1.213 5 H -0.213 1.213 6 H -0.209 1.209 7 C -0.645 4.645 8 H 0.072 0.928 9 C -0.041 4.041 10 C 0.003 3.997 11 N -0.256 5.256 12 C 0.365 3.635 13 O -0.326 6.326 14 C -0.100 4.100 15 N 0.058 4.942 16 N -0.320 5.320 17 C 0.361 3.639 18 O -0.347 6.347 19 C -0.095 4.095 20 C -0.165 4.165 21 C -0.054 4.054 22 N -0.175 5.175 23 C -0.055 4.055 24 C -0.130 4.130 25 C -0.183 4.183 26 C -0.077 4.077 27 C -0.169 4.169 28 C -0.079 4.079 29 C -0.153 4.153 30 C 0.096 3.904 31 H 0.080 0.920 32 H 0.034 0.966 33 H 0.032 0.968 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.234 0.766 37 H 0.154 0.846 38 H 0.184 0.816 39 H 0.186 0.814 40 H 0.171 0.829 41 H 0.130 0.870 42 H 0.152 0.848 43 H 0.155 0.845 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.968 -24.906 -6.896 26.013 hybrid contribution 0.620 -0.759 -0.958 1.371 sum -2.348 -25.665 -7.854 26.943 Atomic orbital electron populations 1.70754 1.06941 1.30752 1.45698 1.25892 0.96481 1.02842 0.93409 0.83469 0.74571 0.74822 0.76950 1.21286 1.21334 1.20912 1.21841 0.94364 0.91202 1.57069 0.92773 1.19588 0.94904 0.92512 0.97094 1.22153 0.95215 0.78962 1.03380 1.45865 1.52940 1.23016 1.03752 1.17379 0.79351 0.82039 0.84705 1.90924 1.53581 1.69627 1.18517 1.23694 0.99360 0.96100 0.90850 1.75571 1.03179 0.91946 1.23459 1.47145 1.55750 1.16901 1.12226 1.18072 0.77569 0.82050 0.86245 1.90849 1.54140 1.75303 1.14417 1.20139 1.00164 0.94735 0.94474 1.22385 1.00332 0.99390 0.94406 1.22814 0.92903 0.89294 1.00423 1.67606 1.12669 1.31285 1.05985 1.22911 0.96209 0.95479 0.90913 1.22389 0.95072 0.93252 1.02242 1.19397 1.08135 0.99066 0.91689 1.20372 0.97909 0.97051 0.92350 1.20933 1.02364 0.98668 0.94940 1.21073 0.94558 0.92823 0.99454 1.20535 1.03957 1.01949 0.88875 1.18356 0.93064 0.90165 0.88825 0.92008 0.96619 0.96801 0.89830 0.89402 0.76564 0.84602 0.81598 0.81446 0.82871 0.86990 0.84836 0.84534 0.84232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.40 13.65 55.43 0.76 -26.65 16 2 C 0.02 0.52 5.46 -17.82 -0.10 0.43 16 3 Si 1.07 24.65 29.90 -169.99 -5.08 19.57 16 4 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.61 -16.50 9.11 -34.44 -0.31 -16.81 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.00 -0.08 4.61 -27.88 -0.13 -0.21 16 10 C 0.12 2.38 5.72 -4.04 -0.02 2.36 16 11 N -0.54 -9.57 2.73 -114.48 -0.31 -9.88 16 12 C 0.58 11.20 8.07 -12.58 -0.10 11.10 16 13 O -0.46 -10.34 17.70 5.20 0.09 -10.25 16 14 C 0.09 1.48 7.55 -80.25 -0.61 0.88 16 15 N -0.13 -2.14 11.19 34.75 0.39 -1.76 16 16 N -0.57 -7.02 6.18 30.57 0.19 -6.83 16 17 C 0.57 7.16 7.91 -12.24 -0.10 7.06 16 18 O -0.48 -7.81 16.78 5.36 0.09 -7.72 16 19 C -0.08 -0.72 5.91 -104.65 -0.62 -1.34 16 20 C -0.14 -0.87 9.62 -39.01 -0.38 -1.24 16 21 C 0.10 0.58 11.17 -17.60 -0.20 0.39 16 22 N -0.47 -3.47 10.33 -13.31 -0.14 -3.61 16 23 C 0.10 0.65 11.17 -17.59 -0.20 0.46 16 24 C -0.11 -0.83 9.68 -39.01 -0.38 -1.21 16 25 C -0.18 -2.35 6.15 -104.85 -0.64 -2.99 16 26 C -0.06 -0.52 9.42 -39.35 -0.37 -0.89 16 27 C -0.15 -1.15 10.05 -39.56 -0.40 -1.55 16 28 C -0.06 -0.52 10.01 -39.57 -0.40 -0.92 16 29 C -0.13 -1.59 9.78 -39.35 -0.39 -1.97 16 30 C 0.20 2.90 6.73 -83.59 -0.56 2.33 16 31 H 0.27 8.19 7.22 -40.82 -0.29 7.89 16 32 H 0.02 0.43 8.01 -51.93 -0.42 0.01 16 33 H 0.01 0.35 8.01 -51.93 -0.42 -0.07 16 34 H 0.08 1.44 7.74 -51.93 -0.40 1.04 16 35 H 0.09 1.77 7.96 -51.93 -0.41 1.36 16 36 H 0.39 3.45 3.21 -182.60 -0.59 2.86 16 37 H 0.14 0.45 6.08 -52.48 -0.32 0.13 16 38 H 0.17 0.44 8.06 -52.49 -0.42 0.02 16 39 H 0.17 0.59 8.06 -52.49 -0.42 0.17 16 40 H 0.15 1.09 7.74 -52.49 -0.41 0.68 16 41 H 0.11 0.70 5.03 -52.49 -0.26 0.44 16 42 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 43 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.14 1.64 7.80 -52.48 -0.41 1.23 16 LS Contribution 386.69 15.07 5.83 5.83 Total: -1.00 -37.04 386.69 -8.90 -45.94 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -4.82 Total: -0.52 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -5.89 Total: -4.13 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: 0.88 Total: -48.72 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: 0.18 Total: -17.97 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -5.08 Total: 19.57 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.04 -8.90 -45.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006231327.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.150 kcal (2) G-P(sol) polarization free energy of solvation -37.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds