Wall clock time and date at job start Tue Mar 31 2020 06:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99708 * 2 1 4 4 H 1.48508 * 109.47098 * 89.99783 * 3 2 1 5 5 H 1.48494 * 109.47386 * 209.99803 * 3 2 1 6 6 H 1.48501 * 109.47362 * 330.00409 * 3 2 1 7 7 C 1.37868 * 120.00298 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00451 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00167 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47140 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.46633 * 179.97438 * 10 9 7 12 12 C 1.34385 * 124.27523 * 269.69910 * 11 10 9 13 13 O 1.21688 * 126.06623 * 0.02562 * 12 11 10 14 14 C 1.47689 * 107.87522 * 179.91310 * 12 11 10 15 15 N 1.31117 * 127.51718 * 180.10125 * 14 12 11 16 16 N 1.40103 * 119.99615 * 186.66617 * 15 14 12 17 17 C 1.34776 * 119.99852 * 186.07277 * 16 15 14 18 18 O 1.21504 * 120.00071 * 359.97438 * 17 16 15 19 19 C 1.48042 * 119.99994 * 180.02562 * 17 16 15 20 20 C 1.39871 * 120.92873 * 359.71901 * 19 17 16 21 21 C 1.38135 * 118.99565 * 179.77519 * 20 19 17 22 22 N 1.31815 * 120.89796 * 0.51045 * 21 20 19 23 23 C 1.31821 * 122.06732 * 359.74241 * 22 21 20 24 24 C 1.38135 * 120.89905 * 359.97438 * 23 22 21 25 25 C 1.48133 * 104.95944 * 0.34030 * 14 12 11 26 26 C 1.39043 * 133.21443 * 179.82605 * 25 14 12 27 27 C 1.38056 * 119.73475 * 180.02562 * 26 25 14 28 28 C 1.38485 * 120.07057 * 359.95428 * 27 26 25 29 29 C 1.38024 * 120.61700 * 0.02562 * 28 27 26 30 30 C 1.39047 * 124.27750 * 90.00855 * 11 10 9 31 31 H 0.97005 * 119.99944 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46992 * 300.00059 * 9 7 2 33 33 H 1.09005 * 109.46870 * 59.99779 * 9 7 2 34 34 H 1.08993 * 109.47250 * 299.99937 * 10 9 7 35 35 H 1.09005 * 109.46966 * 60.00394 * 10 9 7 36 36 H 0.96997 * 119.99895 * 6.07380 * 16 15 14 37 37 H 1.08004 * 120.49979 * 0.02562 * 20 19 17 38 38 H 1.08000 * 119.54807 * 180.27437 * 21 20 19 39 39 H 1.08002 * 119.55109 * 180.02562 * 23 22 21 40 40 H 1.08002 * 120.49809 * 180.02562 * 24 23 22 41 41 H 1.07999 * 120.13363 * 0.03708 * 26 25 14 42 42 H 1.08004 * 119.96834 * 179.97438 * 27 26 25 43 43 H 1.07992 * 119.68703 * 180.02562 * 28 27 26 44 44 H 1.08003 * 119.92878 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4464 2.6527 -0.6999 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5129 -4.9307 0.0012 12 6 1.1399 -5.5887 1.1119 13 8 1.3498 -5.2367 2.2577 14 6 0.4276 -6.8137 0.6956 15 7 -0.1006 -7.7319 1.4682 16 7 -0.6209 -8.9053 0.9067 17 6 -1.2727 -9.7928 1.6839 18 8 -1.4085 -9.5755 2.8716 19 6 -1.8220 -11.0329 1.0907 20 6 -1.6810 -11.3003 -0.2750 21 6 -2.2050 -12.4720 -0.7855 22 7 -2.8387 -13.3260 -0.0066 23 6 -2.9983 -13.1106 1.2841 24 6 -2.5013 -11.9674 1.8793 25 6 0.4453 -6.7816 -0.7853 26 6 -0.0498 -7.6384 -1.7621 27 6 0.1276 -7.3310 -3.0963 28 6 0.7952 -6.1731 -3.4588 29 6 1.2899 -5.3163 -2.4964 30 6 1.1211 -5.6094 -1.1475 31 1 -0.4850 -0.8401 0.0004 32 1 0.6241 -2.5567 0.8903 33 1 0.6248 -2.5571 -0.8897 34 1 2.8721 -3.6042 -0.8894 35 1 2.8721 -3.6042 0.8906 36 1 -0.5121 -9.0789 -0.0414 37 1 -1.1665 -10.6031 -0.9198 38 1 -2.0973 -12.6896 -1.8379 39 1 -3.5242 -13.8381 1.8845 40 1 -2.6354 -11.7976 2.9374 41 1 -0.5711 -8.5406 -1.4783 42 1 -0.2551 -7.9940 -3.8582 43 1 0.9301 -5.9385 -4.5043 44 1 1.8092 -4.4165 -2.7916 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006231327.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:30 Heat of formation + Delta-G solvation = 38.663805 kcal Electronic energy + Delta-G solvation = -30784.457987 eV Core-core repulsion = 26474.655518 eV Total energy + Delta-G solvation = -4309.802469 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.132 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.98240 -41.85355 -40.36749 -39.69457 -38.11592 -37.36680 -35.98370 -34.69189 -33.67141 -32.48420 -32.09254 -31.71120 -30.10045 -28.03195 -26.37503 -25.49045 -24.53901 -24.09530 -23.30465 -22.96966 -22.22796 -21.43988 -19.72520 -19.15250 -18.88414 -18.33718 -17.73917 -17.36474 -17.25458 -16.88371 -16.82661 -16.66168 -16.51745 -15.66987 -15.61036 -15.51749 -15.34904 -15.06418 -14.92152 -14.81239 -14.70908 -14.60917 -14.31989 -14.10552 -13.62002 -13.27652 -12.87298 -12.79311 -12.71880 -12.67696 -12.29005 -12.11574 -11.91359 -11.86147 -11.49371 -11.37564 -11.19181 -11.01086 -10.83574 -10.66539 -10.62322 -10.29089 -9.81768 -9.11671 -8.76294 -6.48947 -1.20506 -0.51209 0.00641 0.12909 0.49807 0.62369 1.39032 1.49247 1.54141 1.61641 1.76656 1.79103 2.54167 2.61888 2.67895 2.72392 2.78962 3.10299 3.20232 3.39944 3.42307 3.55639 3.70341 3.76473 3.85871 3.93820 3.97628 4.21181 4.26013 4.32798 4.40899 4.44359 4.51403 4.63864 4.67005 4.75432 4.82525 4.86508 5.02554 5.10668 5.20973 5.27461 5.40422 5.49313 5.50850 5.59924 5.77581 5.83814 5.94024 6.08033 6.41134 6.46242 6.70630 6.81936 7.34875 8.63982 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.016636 B = 0.002098 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.721400 B =13344.531716 C =14425.229891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.038 4.038 3 Si 1.124 2.876 4 H -0.279 1.279 5 H -0.258 1.258 6 H -0.282 1.282 7 C -0.616 4.616 8 H 0.065 0.935 9 C 0.006 3.994 10 C 0.137 3.863 11 N -0.538 5.538 12 C 0.565 3.435 13 O -0.518 6.518 14 C 0.089 3.911 15 N -0.167 5.167 16 N -0.556 5.556 17 C 0.573 3.427 18 O -0.528 6.528 19 C -0.100 4.100 20 C -0.133 4.133 21 C 0.106 3.894 22 N -0.483 5.483 23 C 0.103 3.897 24 C -0.119 4.119 25 C -0.183 4.183 26 C -0.051 4.051 27 C -0.122 4.122 28 C -0.049 4.049 29 C -0.141 4.141 30 C 0.151 3.849 31 H 0.252 0.748 32 H -0.029 1.029 33 H 0.004 0.996 34 H 0.112 0.888 35 H 0.074 0.926 36 H 0.408 0.592 37 H 0.167 0.833 38 H 0.203 0.797 39 H 0.192 0.808 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.187 0.813 43 H 0.175 0.825 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.134 -28.508 -13.952 31.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.236 4.236 3 Si 0.944 3.056 4 H -0.205 1.205 5 H -0.182 1.182 6 H -0.208 1.208 7 C -0.654 4.654 8 H 0.084 0.916 9 C -0.032 4.032 10 C 0.017 3.983 11 N -0.259 5.259 12 C 0.351 3.649 13 O -0.390 6.390 14 C -0.101 4.101 15 N 0.022 4.978 16 N -0.305 5.305 17 C 0.363 3.637 18 O -0.401 6.401 19 C -0.113 4.113 20 C -0.153 4.153 21 C -0.051 4.051 22 N -0.193 5.193 23 C -0.053 4.053 24 C -0.140 4.140 25 C -0.189 4.189 26 C -0.072 4.072 27 C -0.140 4.140 28 C -0.068 4.068 29 C -0.161 4.161 30 C 0.053 3.947 31 H 0.062 0.938 32 H -0.010 1.010 33 H 0.022 0.978 34 H 0.130 0.870 35 H 0.093 0.907 36 H 0.255 0.745 37 H 0.185 0.815 38 H 0.220 0.780 39 H 0.209 0.791 40 H 0.166 0.834 41 H 0.163 0.837 42 H 0.204 0.796 43 H 0.193 0.807 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.811 -27.527 -11.760 30.065 hybrid contribution 0.491 -0.146 0.357 0.625 sum -2.320 -27.673 -11.404 30.020 Atomic orbital electron populations 1.70900 1.08195 1.29713 1.48351 1.27556 0.96488 1.07162 0.92378 0.82863 0.74502 0.70577 0.77636 1.20494 1.18204 1.20755 1.22295 0.95166 0.92184 1.55714 0.91639 1.19409 0.95121 0.94291 0.94360 1.21742 0.93949 0.78550 1.04071 1.45642 1.52900 1.22303 1.05007 1.17985 0.79297 0.83280 0.84353 1.90859 1.56192 1.71459 1.20500 1.23264 0.99374 0.94883 0.92595 1.75461 1.03664 0.93360 1.25354 1.47025 1.55050 1.15339 1.13134 1.18839 0.76474 0.82668 0.85753 1.90822 1.56135 1.76490 1.16693 1.19979 1.01857 0.93314 0.96102 1.22686 0.99513 1.00020 0.93092 1.23431 0.91437 0.88402 1.01810 1.67683 1.13181 1.32061 1.06335 1.23243 0.95794 0.95248 0.91022 1.22475 0.95476 0.93780 1.02230 1.19477 1.09244 0.99790 0.90352 1.20830 0.96895 0.97220 0.92267 1.21574 0.99318 0.98120 0.94988 1.21599 0.92688 0.92089 1.00437 1.20803 1.04341 1.02757 0.88235 1.18715 0.95955 0.91214 0.88823 0.93850 1.01045 0.97821 0.86966 0.90708 0.74495 0.81521 0.78003 0.79122 0.83439 0.83667 0.79624 0.80746 0.84673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.70 13.65 21.44 0.29 -58.41 16 2 C -0.04 -2.21 5.46 84.65 0.46 -1.75 16 3 Si 1.12 49.59 29.90 68.60 2.05 51.64 16 4 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 6 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.62 -34.46 9.11 25.60 0.23 -34.22 16 8 H 0.07 3.45 7.74 -2.91 -0.02 3.42 16 9 C 0.01 0.32 4.61 29.85 0.14 0.46 16 10 C 0.14 5.68 5.72 86.38 0.49 6.17 16 11 N -0.54 -20.50 2.73 -634.54 -1.73 -22.24 16 12 C 0.57 23.81 8.07 86.80 0.70 24.51 16 13 O -0.52 -25.99 17.70 -4.31 -0.08 -26.07 16 14 C 0.09 3.04 7.55 44.38 0.34 3.37 16 15 N -0.17 -5.74 11.19 -43.98 -0.49 -6.23 16 16 N -0.56 -13.33 6.18 -175.49 -1.08 -14.41 16 17 C 0.57 14.43 7.91 86.84 0.69 15.11 16 18 O -0.53 -18.36 16.78 -3.73 -0.06 -18.43 16 19 C -0.10 -1.61 5.91 -19.88 -0.12 -1.73 16 20 C -0.13 -1.09 9.62 22.64 0.22 -0.88 16 21 C 0.11 0.76 11.17 84.67 0.95 1.70 16 22 N -0.48 -5.71 10.33 -196.02 -2.03 -7.74 16 23 C 0.10 1.13 11.17 84.67 0.95 2.08 16 24 C -0.12 -1.73 9.68 22.64 0.22 -1.52 16 25 C -0.18 -4.69 6.15 -20.01 -0.12 -4.81 16 26 C -0.05 -0.73 9.42 22.42 0.21 -0.52 16 27 C -0.12 -1.08 10.05 22.29 0.22 -0.86 16 28 C -0.05 -0.61 10.01 22.28 0.22 -0.39 16 29 C -0.14 -3.11 9.78 22.42 0.22 -2.89 16 30 C 0.15 4.45 6.73 38.64 0.26 4.71 16 31 H 0.25 16.27 7.22 -92.70 -0.67 15.60 16 32 H -0.03 -1.75 8.01 -2.39 -0.02 -1.77 16 33 H 0.00 0.19 8.01 -2.38 -0.02 0.17 16 34 H 0.11 3.94 7.74 -2.39 -0.02 3.92 16 35 H 0.07 3.26 7.96 -2.38 -0.02 3.24 16 36 H 0.41 6.13 3.21 -213.32 -0.68 5.45 16 37 H 0.17 0.18 6.08 -2.91 -0.02 0.16 16 38 H 0.20 -0.10 8.06 -2.91 -0.02 -0.13 16 39 H 0.19 0.98 8.06 -2.91 -0.02 0.96 16 40 H 0.15 2.23 7.74 -2.91 -0.02 2.21 16 41 H 0.15 0.99 5.03 -2.91 -0.01 0.97 16 42 H 0.19 -0.09 8.06 -2.91 -0.02 -0.12 16 43 H 0.18 0.93 8.06 -2.91 -0.02 0.90 16 44 H 0.14 3.03 7.80 -2.91 -0.02 3.01 16 Total: -1.00 -91.16 386.69 3.64 -87.52 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: 0.50 Total: 5.80 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 6.28 Total: 8.57 kcal Atomic # 7 Polarization: -103.99 SS G_CDS: -5.04 Total: -109.03 kcal Atomic # 8 Polarization: -44.36 SS G_CDS: -0.14 Total: -44.50 kcal Atomic # 14 Polarization: 49.59 SS G_CDS: 2.05 Total: 51.64 kcal Total: -91.16 3.64 -87.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006231327.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.179 kcal (2) G-P(sol) polarization free energy of solvation -91.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds