Wall clock time and date at job start Tue Mar 31 2020 05:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42894 * 109.47546 * 2 1 4 4 C 1.35950 * 117.00546 * 180.02562 * 3 2 1 5 5 C 1.38054 * 119.99473 * 359.97438 * 4 3 2 6 6 C 1.40058 * 119.83193 * 179.72497 * 5 4 3 7 7 C 1.46769 * 120.09074 * 180.32153 * 6 5 4 8 8 C 1.35785 * 120.00194 * 199.27722 * 7 6 5 9 9 S 1.77490 * 127.96836 * 7.51896 * 8 7 6 10 10 C 1.77223 * 94.57016 * 179.97438 * 9 8 7 11 11 O 1.21638 * 126.54881 * 180.02562 * 10 9 8 12 12 N 1.33785 * 106.89384 * 0.35136 * 10 9 8 13 13 C 1.46502 * 120.24293 * 179.71758 * 12 10 9 14 14 C 1.53001 * 109.46896 * 270.02064 * 13 12 10 15 15 C 1.32262 * 119.51951 * 359.73315 * 12 10 9 16 16 O 1.21710 * 122.52339 * 179.97438 * 15 12 10 17 17 C 1.40120 * 119.82424 * 0.57016 * 6 5 4 18 18 C 1.37627 * 119.99205 * 359.44736 * 17 6 5 19 19 C 1.39071 * 120.16874 * 0.25897 * 18 17 6 20 20 O 1.35612 * 119.91563 * 180.02562 * 19 18 17 21 21 C 1.34761 * 116.99869 * 357.66189 * 20 19 18 22 22 H 1.07997 * 119.99832 * 5.14473 * 21 20 19 23 23 C 1.38679 * 120.00054 * 185.14369 * 21 20 19 24 24 N 1.31535 * 120.00219 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00117 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.47607 * 89.99808 * 25 23 21 27 27 H 1.48502 * 109.47296 * 210.00176 * 25 23 21 28 28 H 1.48507 * 109.47242 * 329.99772 * 25 23 21 29 29 H 1.09001 * 109.47211 * 300.00233 * 1 2 3 30 30 H 1.08999 * 109.46807 * 60.00317 * 1 2 3 31 31 H 1.08999 * 109.46945 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47211 * 239.99767 * 2 1 3 33 33 H 1.09004 * 109.47362 * 120.00135 * 2 1 3 34 34 H 1.08003 * 120.08433 * 0.02562 * 5 4 3 35 35 H 1.07997 * 119.99971 * 19.27184 * 7 6 5 36 36 H 1.09002 * 109.47145 * 30.01969 * 13 12 10 37 37 H 1.09000 * 109.47161 * 150.01952 * 13 12 10 38 38 H 1.08995 * 109.46853 * 179.97438 * 14 13 12 39 39 H 1.09002 * 109.47146 * 299.99905 * 14 13 12 40 40 H 1.08995 * 109.47008 * 59.99625 * 14 13 12 41 41 H 1.07999 * 120.00498 * 179.72646 * 17 6 5 42 42 H 1.07996 * 119.91645 * 180.27414 * 18 17 6 43 43 H 0.96999 * 120.00006 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3542 1.5253 -0.0005 5 6 4.1951 0.4304 -0.0005 6 6 5.5830 0.6179 -0.0069 7 6 6.4822 -0.5420 -0.0141 8 6 7.7773 -0.3995 0.3681 9 16 8.5545 1.0277 1.0817 10 6 10.1499 0.2677 1.2156 11 8 11.1608 0.7786 1.6590 12 7 10.0315 -0.9730 0.7293 13 6 11.1923 -1.8661 0.6951 14 6 11.9305 -1.6921 -0.6337 15 6 8.8588 -1.3875 0.2793 16 8 8.6896 -2.5039 -0.1747 17 6 6.1109 1.9158 -0.0012 18 6 5.2660 3.0022 -0.0008 19 6 3.8879 2.8158 -0.0007 20 8 3.0600 3.8899 -0.0008 21 6 3.6369 5.1068 0.0478 22 1 4.7120 5.1970 0.0008 23 6 2.8498 6.2433 0.1583 24 7 1.5403 6.1335 0.2150 25 14 3.6494 7.9302 0.2251 26 1 3.7924 8.4653 -1.1529 27 1 2.8015 8.8485 1.0271 28 1 4.9899 7.8182 0.8542 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.7836 -0.5682 -0.0005 35 1 6.1137 -1.5090 -0.3232 36 1 11.8635 -1.6212 1.5183 37 1 10.8590 -2.8992 0.7930 38 1 12.7945 -2.3562 -0.6590 39 1 11.2594 -1.9369 -1.4570 40 1 12.2638 -0.6590 -0.7316 41 1 7.1807 2.0638 -0.0016 42 1 5.6742 4.0021 -0.0009 43 1 0.9899 6.9285 0.2927 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006325704.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:36 Heat of formation + Delta-G solvation = -71.261711 kcal Electronic energy + Delta-G solvation = -29248.879840 eV Core-core repulsion = 24967.054659 eV Total energy + Delta-G solvation = -4281.825181 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.102 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.57803 -39.94695 -38.73726 -38.00126 -36.87095 -35.91908 -33.65591 -32.70577 -31.95493 -31.38109 -29.74031 -28.31239 -26.07700 -25.11998 -24.88156 -23.58732 -22.76663 -21.46740 -20.97406 -19.57734 -18.81472 -18.40167 -17.79536 -17.37236 -16.72670 -16.31606 -15.75984 -15.66237 -15.55454 -15.32513 -14.79707 -14.46746 -14.24855 -14.23759 -14.12183 -14.03243 -13.56577 -13.37266 -13.19093 -12.62393 -12.59841 -12.53858 -12.35671 -11.98743 -11.91443 -11.84613 -11.47771 -11.44873 -11.39574 -11.26188 -10.84681 -10.75496 -10.64541 -10.49381 -10.27326 -10.03886 -9.86933 -9.65228 -9.18241 -8.41167 -7.98555 -7.07489 -6.84496 -4.30121 0.27436 0.86968 1.51759 1.70142 1.99482 2.31912 2.64455 2.91179 2.96227 3.00345 3.02742 3.66352 3.67893 4.11714 4.22377 4.67523 4.70578 4.79421 4.80005 4.88347 5.04654 5.12660 5.13400 5.17758 5.33170 5.40557 5.45009 5.48727 5.54499 5.62057 5.68951 5.77817 5.84618 5.97962 6.04615 6.08420 6.23895 6.30148 6.56569 6.62499 6.77333 6.87861 6.89378 7.01744 7.27486 7.48741 7.56693 7.93470 8.57719 9.23529 10.29636 Molecular weight = 363.10amu Principal moments of inertia in cm(-1) A = 0.010075 B = 0.002796 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2778.412985 B =10013.130283 C =12532.039288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.301 6.301 4 C 0.059 3.941 5 C -0.127 4.127 6 C -0.191 4.191 7 C 0.122 3.878 8 C -0.302 4.302 9 S 0.003 5.997 10 C 0.504 3.496 11 O -0.453 6.453 12 N -0.571 5.571 13 C 0.094 3.906 14 C -0.166 4.166 15 C 0.566 3.434 16 O -0.493 6.493 17 C -0.044 4.044 18 C -0.223 4.223 19 C 0.152 3.848 20 O -0.131 6.131 21 C -0.384 4.384 22 H 0.104 0.896 23 C 0.043 3.957 24 N -0.832 5.832 25 Si 0.948 3.052 26 H -0.268 1.268 27 H -0.273 1.273 28 H -0.261 1.261 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.127 0.873 35 H 0.146 0.854 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.127 0.873 42 H 0.142 0.858 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.347 -12.213 -0.326 14.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.215 6.215 4 C 0.014 3.986 5 C -0.147 4.147 6 C -0.193 4.193 7 C 0.097 3.903 8 C -0.417 4.417 9 S 0.241 5.759 10 C 0.188 3.812 11 O -0.328 6.328 12 N -0.316 5.316 13 C -0.030 4.030 14 C -0.224 4.224 15 C 0.358 3.642 16 O -0.370 6.370 17 C -0.065 4.065 18 C -0.243 4.243 19 C 0.093 3.907 20 O -0.030 6.030 21 C -0.459 4.459 22 H 0.121 0.879 23 C -0.166 4.166 24 N -0.462 5.462 25 Si 0.771 3.229 26 H -0.193 1.193 27 H -0.198 1.198 28 H -0.185 1.185 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.145 0.855 35 H 0.163 0.837 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.144 0.856 42 H 0.159 0.841 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.806 -10.948 0.058 13.446 hybrid contribution 1.021 -0.675 -0.306 1.261 sum 8.827 -11.623 -0.248 14.597 Atomic orbital electron populations 1.21734 0.93256 1.02019 1.03755 1.22656 0.95683 0.83185 1.00555 1.86238 1.18343 1.27390 1.89528 1.17940 0.82678 0.91148 1.06835 1.20795 0.92320 0.96859 1.04764 1.18026 0.91973 0.91621 1.17643 1.21805 0.88415 0.97646 0.82471 1.23087 0.98456 0.97309 1.22850 1.86698 1.01411 1.15869 1.71915 1.23228 0.95793 0.83269 0.78952 1.90864 1.32449 1.65244 1.44282 1.46436 1.12703 1.15530 1.56960 1.21821 0.86324 0.94775 1.00107 1.22079 1.00734 1.02889 0.96734 1.17508 0.82104 0.87540 0.77082 1.90840 1.83208 1.19854 1.43071 1.21165 0.98490 0.91415 0.95463 1.20775 0.91355 0.99879 1.12293 1.18918 0.89506 0.86193 0.96066 1.83976 1.33357 1.12586 1.73049 1.21704 0.93678 0.79692 1.50796 0.87917 1.25521 0.95465 1.00036 0.95612 1.70046 1.03943 1.31447 1.40719 0.85589 0.79207 0.78975 0.79142 1.19346 1.19817 1.18533 0.91524 0.91544 0.91002 0.92693 0.92695 0.85516 0.83654 0.88782 0.88471 0.90550 0.91818 0.92005 0.85616 0.84077 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 10.28 37.16 0.38 -1.40 16 2 C 0.05 0.75 5.46 37.16 0.20 0.95 16 3 O -0.30 -5.86 9.92 -34.20 -0.34 -6.20 16 4 C 0.06 1.16 6.70 -39.12 -0.26 0.90 16 5 C -0.13 -2.04 8.78 -38.97 -0.34 -2.38 16 6 C -0.19 -3.00 5.82 -105.06 -0.61 -3.61 16 7 C 0.12 1.65 9.83 -37.01 -0.36 1.28 16 8 C -0.30 -4.24 6.35 -37.02 -0.24 -4.48 16 9 S 0.00 0.05 18.93 -107.50 -2.03 -1.99 16 10 C 0.50 7.21 8.40 53.61 0.45 7.66 16 11 O -0.45 -7.21 17.39 5.24 0.09 -7.12 16 12 N -0.57 -7.52 2.48 -121.07 -0.30 -7.82 16 13 C 0.09 0.98 5.99 -4.04 -0.02 0.95 16 14 C -0.17 -1.54 10.24 37.16 0.38 -1.16 16 15 C 0.57 8.03 7.61 -13.93 -0.11 7.92 16 16 O -0.49 -7.67 16.85 5.18 0.09 -7.58 16 17 C -0.04 -0.75 8.66 -39.10 -0.34 -1.09 16 18 C -0.22 -4.35 9.14 -39.50 -0.36 -4.72 16 19 C 0.15 3.36 6.68 -38.75 -0.26 3.11 16 20 O -0.13 -3.43 9.52 -13.95 -0.13 -3.56 16 21 C -0.38 -9.64 9.48 30.90 0.29 -9.34 16 22 H 0.10 2.33 5.17 -52.49 -0.27 2.06 16 23 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 24 N -0.83 -22.21 13.67 55.48 0.76 -21.45 16 25 Si 0.95 18.44 29.55 -169.99 -5.02 13.42 16 26 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 27 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 28 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.66 7.66 -51.93 -0.40 0.26 16 33 H 0.05 0.67 7.66 -51.93 -0.40 0.27 16 34 H 0.13 1.61 6.28 -52.48 -0.33 1.28 16 35 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.09 0.90 7.69 -51.93 -0.40 0.50 16 37 H 0.10 0.95 7.50 -51.93 -0.39 0.56 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.13 1.97 4.40 -26.64 -0.12 1.86 16 42 H 0.14 2.69 5.59 -52.49 -0.29 2.39 16 43 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 381.69 15.07 5.75 5.75 Total: -1.00 -29.55 381.69 -7.12 -36.67 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -4.69 Total: 4.31 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -1.29 Total: -4.44 kcal Atomic # 7 Polarization: -29.72 SS G_CDS: 0.46 Total: -29.26 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.29 Total: -24.45 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.02 Total: 13.42 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -2.03 Total: -1.99 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.55 -7.12 -36.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006325704.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.591 kcal (2) G-P(sol) polarization free energy of solvation -29.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds