Wall clock time and date at job start Tue Mar 31 2020 05:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42894 * 109.47546 * 2 1 4 4 C 1.35950 * 117.00546 * 180.02562 * 3 2 1 5 5 C 1.38054 * 119.99473 * 359.97438 * 4 3 2 6 6 C 1.40058 * 119.83193 * 179.72497 * 5 4 3 7 7 C 1.46769 * 120.09074 * 180.32153 * 6 5 4 8 8 C 1.35785 * 120.00194 * 199.27722 * 7 6 5 9 9 S 1.77490 * 127.96836 * 7.51896 * 8 7 6 10 10 C 1.77223 * 94.57016 * 179.97438 * 9 8 7 11 11 O 1.21638 * 126.54881 * 180.02562 * 10 9 8 12 12 N 1.33785 * 106.89384 * 0.35136 * 10 9 8 13 13 C 1.46502 * 120.24293 * 179.71758 * 12 10 9 14 14 C 1.53001 * 109.46896 * 270.02064 * 13 12 10 15 15 C 1.32262 * 119.51951 * 359.73315 * 12 10 9 16 16 O 1.21710 * 122.52339 * 179.97438 * 15 12 10 17 17 C 1.40120 * 119.82424 * 0.57016 * 6 5 4 18 18 C 1.37627 * 119.99205 * 359.44736 * 17 6 5 19 19 C 1.39071 * 120.16874 * 0.25897 * 18 17 6 20 20 O 1.35612 * 119.91563 * 180.02562 * 19 18 17 21 21 C 1.34761 * 116.99869 * 357.66189 * 20 19 18 22 22 H 1.07997 * 119.99832 * 5.14473 * 21 20 19 23 23 C 1.38679 * 120.00054 * 185.14369 * 21 20 19 24 24 N 1.31535 * 120.00219 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00117 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.47607 * 89.99808 * 25 23 21 27 27 H 1.48502 * 109.47296 * 210.00176 * 25 23 21 28 28 H 1.48507 * 109.47242 * 329.99772 * 25 23 21 29 29 H 1.09001 * 109.47211 * 300.00233 * 1 2 3 30 30 H 1.08999 * 109.46807 * 60.00317 * 1 2 3 31 31 H 1.08999 * 109.46945 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47211 * 239.99767 * 2 1 3 33 33 H 1.09004 * 109.47362 * 120.00135 * 2 1 3 34 34 H 1.08003 * 120.08433 * 0.02562 * 5 4 3 35 35 H 1.07997 * 119.99971 * 19.27184 * 7 6 5 36 36 H 1.09002 * 109.47145 * 30.01969 * 13 12 10 37 37 H 1.09000 * 109.47161 * 150.01952 * 13 12 10 38 38 H 1.08995 * 109.46853 * 179.97438 * 14 13 12 39 39 H 1.09002 * 109.47146 * 299.99905 * 14 13 12 40 40 H 1.08995 * 109.47008 * 59.99625 * 14 13 12 41 41 H 1.07999 * 120.00498 * 179.72646 * 17 6 5 42 42 H 1.07996 * 119.91645 * 180.27414 * 18 17 6 43 43 H 0.96999 * 120.00006 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3542 1.5253 -0.0005 5 6 4.1951 0.4304 -0.0005 6 6 5.5830 0.6179 -0.0069 7 6 6.4822 -0.5420 -0.0141 8 6 7.7773 -0.3995 0.3681 9 16 8.5545 1.0277 1.0817 10 6 10.1499 0.2677 1.2156 11 8 11.1608 0.7786 1.6590 12 7 10.0315 -0.9730 0.7293 13 6 11.1923 -1.8661 0.6951 14 6 11.9305 -1.6921 -0.6337 15 6 8.8588 -1.3875 0.2793 16 8 8.6896 -2.5039 -0.1747 17 6 6.1109 1.9158 -0.0012 18 6 5.2660 3.0022 -0.0008 19 6 3.8879 2.8158 -0.0007 20 8 3.0600 3.8899 -0.0008 21 6 3.6369 5.1068 0.0478 22 1 4.7120 5.1970 0.0008 23 6 2.8498 6.2433 0.1583 24 7 1.5403 6.1335 0.2150 25 14 3.6494 7.9302 0.2251 26 1 3.7924 8.4653 -1.1529 27 1 2.8015 8.8485 1.0271 28 1 4.9899 7.8182 0.8542 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.7836 -0.5682 -0.0005 35 1 6.1137 -1.5090 -0.3232 36 1 11.8635 -1.6212 1.5183 37 1 10.8590 -2.8992 0.7930 38 1 12.7945 -2.3562 -0.6590 39 1 11.2594 -1.9369 -1.4570 40 1 12.2638 -0.6590 -0.7316 41 1 7.1807 2.0638 -0.0016 42 1 5.6742 4.0021 -0.0009 43 1 0.9899 6.9285 0.2927 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006325704.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:35 Heat of formation + Delta-G solvation = -88.718546 kcal Electronic energy + Delta-G solvation = -29249.636825 eV Core-core repulsion = 24967.054659 eV Total energy + Delta-G solvation = -4282.582166 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.102 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.72633 -41.41532 -39.96991 -39.46804 -38.29897 -37.08416 -34.97723 -34.24070 -33.02653 -32.50165 -31.13555 -29.68252 -27.61337 -26.28779 -26.12085 -24.80812 -23.97683 -22.73498 -22.21928 -20.78529 -20.13739 -19.92281 -19.24933 -18.56389 -17.91698 -17.62020 -16.99748 -16.97471 -16.82016 -16.67294 -16.27149 -15.74863 -15.66343 -15.55476 -15.41308 -15.03224 -14.97937 -14.67447 -14.08938 -13.96002 -13.88649 -13.55476 -13.44634 -13.29140 -13.15377 -13.10541 -12.83491 -12.75530 -12.62255 -12.26125 -12.15978 -11.99086 -11.96136 -11.76764 -11.51059 -11.36544 -11.13941 -10.92440 -10.84492 -9.82023 -9.29032 -8.57133 -8.53506 -6.16006 -0.94684 -0.33186 0.26046 0.45548 0.55895 1.01350 1.37055 1.45490 1.51254 1.54210 1.74987 2.13784 2.42051 2.72169 2.88647 3.06486 3.26581 3.75992 3.87994 3.90069 3.94776 4.04203 4.08333 4.13758 4.21593 4.28797 4.33910 4.40932 4.43876 4.54169 4.71553 4.72286 4.83358 4.83707 4.91656 4.99065 5.05622 5.11156 5.22042 5.30554 5.36364 5.48068 5.53227 5.71251 5.81061 5.90025 6.31892 6.60810 6.89384 7.64909 8.67031 Molecular weight = 363.10amu Principal moments of inertia in cm(-1) A = 0.010075 B = 0.002796 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2778.412985 B =10013.130283 C =12532.039288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.042 3.958 3 O -0.338 6.338 4 C 0.045 3.955 5 C -0.110 4.110 6 C -0.159 4.159 7 C 0.131 3.869 8 C -0.283 4.283 9 S -0.009 6.009 10 C 0.513 3.487 11 O -0.467 6.467 12 N -0.569 5.569 13 C 0.086 3.914 14 C -0.162 4.162 15 C 0.572 3.428 16 O -0.496 6.496 17 C -0.058 4.058 18 C -0.220 4.220 19 C 0.118 3.882 20 O -0.198 6.198 21 C -0.415 4.415 22 H 0.111 0.889 23 C -0.015 4.015 24 N -0.905 5.905 25 Si 1.017 2.983 26 H -0.262 1.262 27 H -0.272 1.272 28 H -0.250 1.250 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.111 0.889 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.173 0.827 35 H 0.186 0.814 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.143 0.857 42 H 0.136 0.864 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.621 -16.681 -0.426 20.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 O -0.254 6.254 4 C 0.000 4.000 5 C -0.129 4.129 6 C -0.161 4.161 7 C 0.106 3.894 8 C -0.398 4.398 9 S 0.229 5.771 10 C 0.196 3.804 11 O -0.343 6.343 12 N -0.314 5.314 13 C -0.036 4.036 14 C -0.220 4.220 15 C 0.363 3.637 16 O -0.373 6.373 17 C -0.078 4.078 18 C -0.239 4.239 19 C 0.064 3.936 20 O -0.101 6.101 21 C -0.490 4.490 22 H 0.128 0.872 23 C -0.215 4.215 24 N -0.541 5.541 25 Si 0.836 3.164 26 H -0.187 1.187 27 H -0.197 1.197 28 H -0.173 1.173 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.129 0.871 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.190 0.810 35 H 0.203 0.797 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.159 0.841 42 H 0.153 0.847 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.164 -15.504 -0.045 19.105 hybrid contribution 0.544 -0.101 -0.249 0.607 sum 11.708 -15.605 -0.293 19.511 Atomic orbital electron populations 1.21797 0.92363 1.04066 1.02409 1.23100 0.96600 0.81010 1.02534 1.86233 1.18377 1.31116 1.89625 1.18261 0.83637 0.91167 1.06924 1.21245 0.91827 0.97795 1.01999 1.18399 0.92510 0.91996 1.13208 1.22038 0.87451 0.98092 0.81867 1.23386 0.98712 0.96976 1.20729 1.86919 1.02000 1.16277 1.71873 1.23077 0.95218 0.83493 0.78612 1.90871 1.32887 1.65620 1.44877 1.46467 1.13315 1.15419 1.56178 1.22125 0.85604 0.94700 1.01211 1.22061 1.01369 1.02948 0.95593 1.17426 0.82242 0.87221 0.76846 1.90860 1.83338 1.20033 1.43071 1.21359 0.99069 0.91372 0.96006 1.20902 0.90955 1.00739 1.11328 1.19617 0.90561 0.86960 0.96416 1.83983 1.34445 1.13290 1.78420 1.22004 0.94124 0.80331 1.52556 0.87208 1.26628 0.95891 1.03715 0.95266 1.70185 1.05612 1.32014 1.46266 0.84606 0.78455 0.74077 0.79286 1.18683 1.19659 1.17299 0.93008 0.92870 0.87100 0.90343 0.90581 0.81017 0.79675 0.87801 0.87353 0.87908 0.92662 0.92984 0.84070 0.84657 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 10.28 71.98 0.74 -2.64 16 2 C 0.04 1.06 5.46 71.98 0.39 1.46 16 3 O -0.34 -13.45 9.92 -79.01 -0.78 -14.23 16 4 C 0.05 1.78 6.70 22.57 0.15 1.93 16 5 C -0.11 -3.12 8.78 22.67 0.20 -2.92 16 6 C -0.16 -4.39 5.82 -20.15 -0.12 -4.51 16 7 C 0.13 2.76 9.83 23.93 0.24 3.00 16 8 C -0.28 -6.58 6.35 23.93 0.15 -6.43 16 9 S -0.01 -0.22 18.93 -56.49 -1.07 -1.29 16 10 C 0.51 13.02 8.40 129.95 1.09 14.12 16 11 O -0.47 -13.60 17.39 -4.15 -0.07 -13.67 16 12 N -0.57 -12.73 2.48 -775.35 -1.92 -14.65 16 13 C 0.09 1.46 5.99 86.38 0.52 1.97 16 14 C -0.16 -2.40 10.24 71.98 0.74 -1.67 16 15 C 0.57 13.48 7.61 86.85 0.66 14.14 16 16 O -0.50 -12.82 16.85 -4.38 -0.07 -12.90 16 17 C -0.06 -1.85 8.66 22.58 0.20 -1.65 16 18 C -0.22 -8.79 9.14 22.33 0.20 -8.59 16 19 C 0.12 5.51 6.68 22.81 0.15 5.66 16 20 O -0.20 -11.31 9.52 -6.55 -0.06 -11.37 16 21 C -0.41 -22.78 9.48 67.93 0.64 -22.14 16 22 H 0.11 5.43 5.17 -2.91 -0.02 5.42 16 23 C -0.02 -0.81 5.49 84.84 0.47 -0.35 16 24 N -0.91 -53.40 13.67 21.62 0.30 -53.10 16 25 Si 1.02 40.70 29.55 68.60 2.03 42.73 16 26 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 27 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 28 H -0.25 -9.24 7.11 99.48 0.71 -8.53 16 29 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.08 1.60 7.66 -2.39 -0.02 1.58 16 33 H 0.08 1.58 7.66 -2.38 -0.02 1.56 16 34 H 0.17 3.33 6.28 -2.91 -0.02 3.31 16 35 H 0.19 2.68 8.06 -2.91 -0.02 2.65 16 36 H 0.10 1.59 7.69 -2.39 -0.02 1.57 16 37 H 0.11 1.63 7.50 -2.39 -0.02 1.62 16 38 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.14 4.10 4.40 -19.34 -0.09 4.01 16 42 H 0.14 5.46 5.59 -2.91 -0.02 5.45 16 43 H 0.28 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -72.31 381.69 5.76 -66.55 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 1.00 Total: 20.55 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: 6.42 Total: -8.62 kcal Atomic # 7 Polarization: -66.13 SS G_CDS: -1.62 Total: -67.75 kcal Atomic # 8 Polarization: -51.17 SS G_CDS: -0.99 Total: -52.16 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Atomic # 16 Polarization: -0.22 SS G_CDS: -1.07 Total: -1.29 kcal Total: -72.31 5.76 -66.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006325704.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.171 kcal (2) G-P(sol) polarization free energy of solvation -72.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds