Wall clock time and date at job start Tue Mar 31 2020 05:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30576 * 120.00028 * 2 1 4 4 N 1.40099 * 119.99783 * 186.39927 * 3 2 1 5 5 C 1.34778 * 119.99703 * 181.99085 * 4 3 2 6 6 O 1.21602 * 119.99952 * 179.97438 * 5 4 3 7 7 N 1.34783 * 120.00166 * 0.02562 * 5 4 3 8 8 C 1.39953 * 120.00050 * 184.74678 * 7 5 4 9 9 C 1.38873 * 120.05852 * 220.53814 * 8 7 5 10 10 C 1.38107 * 119.94192 * 180.23109 * 9 8 7 11 11 C 1.38382 * 120.05578 * 359.49629 * 10 9 8 12 12 Cl 1.73600 * 119.94009 * 180.25251 * 11 10 9 13 13 C 1.38379 * 120.12128 * 0.23060 * 11 10 9 14 14 C 1.38112 * 120.05548 * 0.02562 * 13 11 10 15 15 C 1.41481 * 119.99865 * 179.97438 * 2 1 3 16 16 C 1.37943 * 125.10074 * 34.76747 * 15 2 1 17 17 C 1.35627 * 114.83381 * 179.77658 * 16 15 2 18 18 C 1.38799 * 114.57233 * 0.50505 * 17 16 15 19 19 C 1.39451 * 125.21225 * 179.69807 * 18 17 16 20 20 H 1.08004 * 119.99713 * 9.68874 * 19 18 17 21 21 C 1.40110 * 120.00187 * 189.68323 * 19 18 17 22 22 N 1.30826 * 119.99804 * 9.55707 * 21 19 18 23 23 Si 1.86797 * 120.00128 * 189.56052 * 21 19 18 24 24 H 1.48494 * 109.47346 * 94.97681 * 23 21 19 25 25 H 1.48503 * 109.46910 * 214.97804 * 23 21 19 26 26 H 1.48510 * 109.46980 * 334.97594 * 23 21 19 27 27 S 1.75811 * 125.10247 * 215.06678 * 15 2 1 28 28 H 1.09001 * 109.47288 * 90.00344 * 1 2 3 29 29 H 1.09002 * 109.47594 * 209.99719 * 1 2 3 30 30 H 1.09000 * 109.47404 * 330.00142 * 1 2 3 31 31 H 0.96996 * 120.00400 * 1.98788 * 4 3 2 32 32 H 0.97001 * 119.99360 * 4.74657 * 7 5 4 33 33 H 1.08002 * 120.02639 * 359.97438 * 9 8 7 34 34 H 1.07998 * 119.96870 * 179.77219 * 10 9 8 35 35 H 1.07994 * 119.97537 * 180.02562 * 13 11 10 36 36 H 1.08000 * 120.03151 * 180.02562 * 14 13 11 37 37 H 1.08002 * 122.58407 * 359.97438 * 16 15 2 38 38 H 1.07999 * 122.71505 * 180.22738 * 17 16 15 39 39 H 0.97003 * 120.00237 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1308 0.0000 4 7 3.5543 1.1345 -0.1352 5 6 4.2321 2.2988 -0.0950 6 8 5.4425 2.3020 -0.2119 7 7 3.5685 3.4594 0.0759 8 6 4.2590 4.6754 0.0185 9 6 3.9539 5.6916 0.9144 10 6 4.6335 6.8922 0.8525 11 6 5.6250 7.0794 -0.0946 12 17 6.4819 8.5875 -0.1655 13 6 5.9349 6.0664 -0.9849 14 6 5.2547 4.8657 -0.9307 15 6 2.2144 -1.2253 0.0005 16 6 1.8080 -2.3760 -0.6425 17 6 2.6496 -3.4311 -0.5081 18 6 3.7745 -3.1774 0.2645 19 6 4.7783 -4.1020 0.5511 20 1 4.7992 -5.0525 0.0388 21 6 5.7598 -3.7977 1.5035 22 7 5.6336 -2.7352 2.2564 23 14 7.2486 -4.9090 1.6984 24 1 8.3733 -4.3765 0.8881 25 1 7.6473 -4.9562 3.1281 26 1 6.9085 -6.2780 1.2339 27 16 3.7394 -1.5119 0.8271 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 4.0320 0.2993 -0.2578 32 1 2.6122 3.4518 0.2387 33 1 3.1829 5.5445 1.6563 34 1 4.3941 7.6841 1.5467 35 1 6.7094 6.2149 -1.7228 36 1 5.4972 4.0752 -1.6255 37 1 0.8920 -2.4316 -1.2119 38 1 2.4577 -4.3922 -0.9617 39 1 6.3129 -2.5247 2.9161 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006373815.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:41 Heat of formation + Delta-G solvation = 36.529403 kcal Electronic energy + Delta-G solvation = -26048.358411 eV Core-core repulsion = 22108.376225 eV Total energy + Delta-G solvation = -3939.982186 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 363.055 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.34421 -38.65800 -37.16314 -36.51179 -35.77899 -34.35168 -34.15014 -32.45742 -31.12604 -29.27308 -29.01487 -27.44112 -25.52226 -23.20299 -22.69749 -22.66666 -20.62320 -19.83395 -18.71974 -18.29145 -17.95669 -17.00804 -16.52704 -16.06924 -15.63527 -15.17612 -14.85732 -14.43889 -14.20511 -14.18582 -13.60922 -13.55787 -13.48324 -13.28322 -12.76796 -12.51283 -12.29175 -12.10045 -11.96019 -11.93834 -11.70492 -11.54186 -11.52227 -11.37369 -11.01025 -10.92172 -10.63139 -10.24660 -10.10227 -9.91794 -9.85854 -9.56537 -9.31170 -9.08926 -8.37290 -8.01500 -7.53037 -7.35938 -7.00524 -4.86588 1.07428 1.25377 1.78681 2.08063 2.55585 2.74366 2.81245 2.89281 2.96060 3.29031 3.44167 3.54451 3.73208 3.79262 3.91321 4.05350 4.67453 4.74262 4.81423 5.21493 5.31747 5.42833 5.63379 5.72190 5.86740 5.93187 5.94552 6.13845 6.19798 6.25228 6.30412 6.44562 6.46705 6.55652 6.73573 6.93647 6.98637 7.12734 7.28991 7.44578 7.61073 7.67429 7.85237 8.10053 8.13999 8.55501 9.13757 9.39858 Molecular weight = 363.05amu Principal moments of inertia in cm(-1) A = 0.012017 B = 0.002372 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.414907 B =11801.053537 C =13653.980810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.241 3.759 3 N -0.353 5.353 4 N -0.570 5.570 5 C 0.727 3.273 6 O -0.584 6.584 7 N -0.679 5.679 8 C 0.185 3.815 9 C -0.137 4.137 10 C -0.091 4.091 11 C -0.059 4.059 12 Cl -0.081 7.081 13 C -0.090 4.090 14 C -0.108 4.108 15 C -0.460 4.460 16 C -0.001 4.001 17 C -0.338 4.338 18 C 0.044 3.956 19 C -0.355 4.355 20 H 0.104 0.896 21 C 0.048 3.952 22 N -0.748 5.748 23 Si 0.938 3.062 24 H -0.260 1.260 25 H -0.268 1.268 26 H -0.254 1.254 27 S 0.133 5.867 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.406 0.594 32 H 0.419 0.581 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.140 0.860 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.222 10.842 -1.346 11.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.060 3.940 3 N -0.168 5.168 4 N -0.322 5.322 5 C 0.427 3.573 6 O -0.460 6.460 7 N -0.328 5.328 8 C 0.089 3.911 9 C -0.159 4.159 10 C -0.110 4.110 11 C -0.086 4.086 12 Cl -0.053 7.053 13 C -0.109 4.109 14 C -0.129 4.129 15 C -0.578 4.578 16 C -0.033 4.033 17 C -0.362 4.362 18 C -0.079 4.079 19 C -0.391 4.391 20 H 0.122 0.878 21 C -0.177 4.177 22 N -0.372 5.372 23 Si 0.760 3.240 24 H -0.184 1.184 25 H -0.193 1.193 26 H -0.177 1.177 27 S 0.392 5.608 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.257 0.743 32 H 0.257 0.743 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.157 0.843 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.392 13.106 -0.357 13.185 hybrid contribution -0.326 -2.551 -0.658 2.655 sum -1.718 10.555 -1.015 10.741 Atomic orbital electron populations 1.20566 0.88757 1.02936 1.02442 1.21284 0.95069 0.87844 0.89851 1.74682 0.90211 1.25197 1.26705 1.46775 1.04204 1.08040 1.73213 1.15512 0.84332 0.79878 0.77533 1.90979 1.11335 1.85392 1.58321 1.42652 1.12417 1.02670 1.75042 1.17655 0.94301 0.85419 0.93754 1.20913 1.02829 0.93333 0.98779 1.20767 0.94911 0.97505 0.97803 1.20816 0.98482 0.88450 1.00848 1.98348 1.76716 1.32091 1.98096 1.20892 0.99820 0.91709 0.98485 1.21141 0.96644 0.96961 0.98148 1.22254 1.09701 0.98967 1.26926 1.19876 0.96953 0.91064 0.95411 1.19790 0.99749 1.00098 1.16556 1.22192 0.95320 0.96083 0.94270 1.19440 1.03743 1.01760 1.14140 0.87801 1.26458 1.00768 0.96625 0.93883 1.69053 1.32742 1.21902 1.13530 0.85746 0.78997 0.80161 0.79125 1.18424 1.19282 1.17750 1.84448 1.17359 1.06418 1.52604 0.90796 0.90498 0.91170 0.74311 0.74306 0.84749 0.84802 0.84832 0.84253 0.87868 0.87368 0.88223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.20 9.85 36.00 0.35 -0.85 16 2 C 0.24 4.54 6.85 -81.89 -0.56 3.98 16 3 N -0.35 -6.72 10.40 33.95 0.35 -6.37 16 4 N -0.57 -11.93 5.68 27.64 0.16 -11.77 16 5 C 0.73 14.66 8.38 -86.91 -0.73 13.94 16 6 O -0.58 -13.30 15.33 5.28 0.08 -13.22 16 7 N -0.68 -10.96 5.29 -14.21 -0.08 -11.03 16 8 C 0.19 2.73 6.14 -83.68 -0.51 2.21 16 9 C -0.14 -1.65 9.97 -39.39 -0.39 -2.04 16 10 C -0.09 -1.00 9.82 -39.58 -0.39 -1.39 16 11 C -0.06 -0.70 6.32 -39.48 -0.25 -0.94 16 12 Cl -0.08 -0.86 28.95 -51.86 -1.50 -2.37 16 13 C -0.09 -1.13 9.82 -39.58 -0.39 -1.52 16 14 C -0.11 -1.60 8.65 -39.39 -0.34 -1.94 16 15 C -0.46 -9.89 5.48 -38.46 -0.21 -10.10 16 16 C 0.00 -0.03 9.73 -40.62 -0.40 -0.42 16 17 C -0.34 -7.60 10.15 -40.31 -0.41 -8.01 16 18 C 0.04 1.05 6.12 -38.92 -0.24 0.81 16 19 C -0.35 -8.14 9.25 -38.43 -0.36 -8.50 16 20 H 0.10 2.20 7.87 -52.48 -0.41 1.79 16 21 C 0.05 1.04 5.46 -17.28 -0.09 0.95 16 22 N -0.75 -17.05 10.86 55.56 0.60 -16.45 16 23 Si 0.94 16.09 29.57 -169.99 -5.03 11.06 16 24 H -0.26 -4.50 7.11 56.52 0.40 -4.09 16 25 H -0.27 -4.51 7.11 56.52 0.40 -4.11 16 26 H -0.25 -4.22 7.11 56.52 0.40 -3.82 16 27 S 0.13 3.15 17.12 -107.50 -1.84 1.31 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.41 9.26 5.06 -162.16 -0.82 8.44 16 32 H 0.42 6.06 7.87 -40.82 -0.32 5.74 16 33 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.14 2.24 6.92 -52.49 -0.36 1.88 16 37 H 0.10 1.84 8.03 -52.49 -0.42 1.42 16 38 H 0.11 2.26 8.06 -52.49 -0.42 1.84 16 39 H 0.30 6.28 8.30 -40.82 -0.34 5.94 16 LS Contribution 367.16 15.07 5.53 5.53 Total: -1.00 -26.87 367.16 -11.06 -37.93 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: -4.43 Total: 19.21 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -4.91 Total: -13.83 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: 1.04 Total: -45.63 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.08 Total: -13.22 kcal Atomic # 14 Polarization: 16.09 SS G_CDS: -5.03 Total: 11.06 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -1.84 Total: 1.31 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.37 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -26.87 -11.06 -37.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006373815.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.455 kcal (2) G-P(sol) polarization free energy of solvation -26.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds