Wall clock time and date at job start Tue Mar 31 2020 05:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35671 * 116.99886 * 2 1 4 4 C 1.38690 * 120.15101 * 0.30370 * 3 2 1 5 5 C 1.38069 * 120.08492 * 180.26844 * 4 3 2 6 6 C 1.38547 * 120.39258 * 359.70196 * 5 4 3 7 7 C 1.37782 * 120.30509 * 359.97438 * 6 5 4 8 8 C 1.39728 * 119.90316 * 0.02575 * 7 6 5 9 9 C 1.47486 * 120.19185 * 179.97438 * 8 7 6 10 10 O 1.21648 * 120.00180 * 179.97438 * 9 8 7 11 11 N 1.34773 * 120.00145 * 359.97438 * 9 8 7 12 12 N 1.40104 * 119.99982 * 180.02562 * 11 9 8 13 13 C 1.30072 * 119.99969 * 180.02562 * 12 11 9 14 14 C 1.46938 * 119.99920 * 179.97438 * 13 12 11 15 15 C 1.36272 * 126.70062 * 180.02562 * 14 13 12 16 16 N 1.36257 * 109.70196 * 179.97438 * 15 14 13 17 17 C 1.37075 * 124.87835 * 179.97438 * 16 15 14 18 18 H 1.07997 * 119.99986 * 158.49938 * 17 16 15 19 19 C 1.38809 * 119.99910 * 338.50678 * 17 16 15 20 20 N 1.31453 * 119.99788 * 348.88716 * 19 17 16 21 21 Si 1.86797 * 120.00074 * 168.88760 * 19 17 16 22 22 H 1.48500 * 109.46995 * 94.66053 * 21 19 17 23 23 H 1.48495 * 109.47239 * 214.66146 * 21 19 17 24 24 H 1.48493 * 109.47134 * 334.66304 * 21 19 17 25 25 C 1.38327 * 110.25024 * 0.02562 * 16 15 14 26 26 C 1.38986 * 133.15816 * 180.02562 * 25 16 15 27 27 C 1.37931 * 119.93946 * 179.34124 * 26 25 16 28 28 C 1.38680 * 120.59980 * 0.47815 * 27 26 25 29 29 C 1.37901 * 120.29281 * 359.69524 * 28 27 26 30 30 C 1.39190 * 119.68407 * 359.97438 * 29 28 27 31 31 H 1.08994 * 109.46805 * 299.99806 * 1 2 3 32 32 H 1.09005 * 109.46832 * 59.99537 * 1 2 3 33 33 H 1.08999 * 109.46933 * 179.97438 * 1 2 3 34 34 H 1.08002 * 119.95683 * 359.97349 * 4 3 2 35 35 H 1.08002 * 119.79941 * 179.72011 * 5 4 3 36 36 H 1.08003 * 119.84439 * 180.02562 * 6 5 4 37 37 H 1.08002 * 120.05261 * 180.02562 * 7 6 5 38 38 H 0.96996 * 119.99995 * 359.97438 * 11 9 8 39 39 H 1.07995 * 119.99694 * 359.97438 * 13 12 11 40 40 H 1.08002 * 125.15187 * 359.96003 * 15 14 13 41 41 H 0.97001 * 120.00241 * 180.02562 * 20 19 17 42 42 H 1.08007 * 120.03070 * 359.94659 * 26 25 16 43 43 H 1.07993 * 119.70192 * 180.15390 * 27 26 25 44 44 H 1.07998 * 119.85112 * 179.68113 * 28 27 26 45 45 H 1.08001 * 120.15844 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2926 2.3740 0.0064 5 6 1.9208 3.6035 0.0008 6 6 3.3039 3.6839 -0.0050 7 6 4.0671 2.5367 -0.0047 8 6 3.4444 1.2859 0.0009 9 6 4.2551 0.0538 0.0008 10 8 3.7095 -1.0334 0.0061 11 7 5.6006 0.1324 -0.0054 12 7 6.3707 -1.0380 -0.0061 13 6 7.6692 -0.9621 -0.0115 14 6 8.4768 -2.1896 -0.0117 15 6 9.8372 -2.2695 -0.0165 16 7 10.2206 -3.5770 -0.0144 17 6 11.5203 -4.0127 -0.0185 18 1 11.7571 -5.0084 0.3262 19 6 12.5320 -3.1740 -0.4655 20 7 12.2318 -2.0541 -1.0847 21 14 14.3202 -3.6369 -0.1870 22 1 14.8434 -4.3357 -1.3882 23 1 15.1173 -2.4081 0.0573 24 1 14.4213 -4.5349 0.9913 25 6 9.1100 -4.4016 -0.0086 26 6 8.9512 -5.7823 -0.0041 27 6 7.6852 -6.3296 0.0150 28 6 6.5636 -5.5140 0.0199 29 6 6.7012 -4.1419 0.0120 30 6 7.9732 -3.5768 -0.0004 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 0.2140 2.3194 0.0109 35 1 1.3304 4.5078 0.0012 36 1 3.7861 4.6503 -0.0090 37 1 5.1450 2.6042 -0.0088 38 1 6.0357 0.9993 -0.0100 39 1 8.1536 0.0031 -0.0159 40 1 10.5096 -1.4243 -0.0215 41 1 12.9387 -1.4681 -1.3975 42 1 9.8183 -6.4262 -0.0057 43 1 7.5663 -7.4029 0.0210 44 1 5.5780 -5.9554 0.0297 45 1 5.8263 -3.5088 0.0154 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006389328.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:14 Heat of formation + Delta-G solvation = 61.809734 kcal Electronic energy + Delta-G solvation = -30375.159320 eV Core-core repulsion = 26131.786444 eV Total energy + Delta-G solvation = -4243.372876 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.137 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.62585 -40.15017 -38.68511 -37.46126 -36.15021 -35.78079 -33.43684 -32.45117 -31.40193 -30.38609 -29.94239 -28.69251 -27.87748 -27.44276 -25.35007 -24.06987 -22.54923 -21.93985 -21.59082 -20.64437 -20.20425 -19.22734 -18.29061 -17.68964 -17.15329 -16.66306 -16.09420 -15.97254 -15.63010 -15.20358 -14.93697 -14.82585 -14.70420 -14.56609 -14.28715 -13.91626 -13.59309 -13.56377 -13.10633 -12.88161 -12.86004 -12.46141 -12.29551 -11.94498 -11.89748 -11.70531 -11.50421 -11.40882 -11.36285 -11.35792 -11.09983 -10.72940 -10.67527 -10.41840 -10.01409 -9.59973 -9.46643 -9.33824 -9.22066 -8.94407 -8.48964 -8.03949 -7.19471 -6.97744 -6.50351 -4.44255 0.64691 1.11779 1.98151 2.41570 2.73418 2.94775 2.96058 2.97788 3.01797 3.06547 3.14963 3.70901 3.80877 4.17091 4.42427 4.45364 4.65556 4.73023 4.75918 4.80068 4.93493 4.99927 5.03685 5.05937 5.22271 5.30983 5.39322 5.49842 5.68448 5.85385 5.86352 5.95369 5.97486 6.08475 6.12161 6.38478 6.39860 6.47350 6.60162 6.81280 6.94984 7.01754 7.06615 7.13585 7.15646 7.43581 7.52103 7.58940 7.65455 7.92961 8.05842 8.16738 8.31467 8.81204 9.00583 9.22945 10.12069 Molecular weight = 363.14amu Principal moments of inertia in cm(-1) A = 0.014025 B = 0.002146 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.934524 B =13046.772381 C =14981.569494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.278 6.278 3 C 0.186 3.814 4 C -0.221 4.221 5 C -0.056 4.056 6 C -0.167 4.167 7 C -0.050 4.050 8 C -0.163 4.163 9 C 0.571 3.429 10 O -0.492 6.492 11 N -0.585 5.585 12 N -0.282 5.282 13 C 0.189 3.811 14 C -0.242 4.242 15 C 0.132 3.868 16 N -0.275 5.275 17 C -0.338 4.338 18 H 0.110 0.890 19 C 0.043 3.957 20 N -0.848 5.848 21 Si 0.942 3.058 22 H -0.271 1.271 23 H -0.275 1.275 24 H -0.263 1.263 25 C 0.046 3.954 26 C -0.108 4.108 27 C -0.137 4.137 28 C -0.162 4.162 29 C -0.075 4.075 30 C -0.068 4.068 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.103 0.897 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.370 0.630 39 H 0.102 0.898 40 H 0.178 0.822 41 H 0.282 0.718 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.106 0.894 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.256 11.779 1.871 18.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.188 6.188 3 C 0.137 3.863 4 C -0.240 4.240 5 C -0.075 4.075 6 C -0.186 4.186 7 C -0.068 4.068 8 C -0.168 4.168 9 C 0.358 3.642 10 O -0.364 6.364 11 N -0.326 5.326 12 N -0.089 5.089 13 C -0.016 4.016 14 C -0.253 4.253 15 C -0.013 4.013 16 N 0.064 4.936 17 C -0.466 4.466 18 H 0.127 0.873 19 C -0.166 4.166 20 N -0.480 5.480 21 Si 0.766 3.234 22 H -0.197 1.197 23 H -0.200 1.200 24 H -0.187 1.187 25 C -0.061 4.061 26 C -0.128 4.128 27 C -0.157 4.157 28 C -0.182 4.182 29 C -0.093 4.093 30 C -0.073 4.073 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.122 0.878 34 H 0.152 0.848 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.207 0.793 39 H 0.119 0.881 40 H 0.195 0.805 41 H 0.093 0.907 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.124 0.876 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.016 10.334 1.772 18.314 hybrid contribution 1.541 1.322 -0.104 2.033 sum -13.475 11.656 1.668 17.895 Atomic orbital electron populations 1.23173 0.78758 1.04464 1.01012 1.86430 1.20728 1.25253 1.86433 1.19039 0.90848 0.85022 0.91383 1.21244 1.00339 0.92017 1.10377 1.21112 0.94726 0.97044 0.94570 1.20980 0.93842 0.98441 1.05301 1.21223 0.99966 0.90863 0.94789 1.19377 0.90900 0.93872 1.12655 1.17551 0.80243 0.88678 0.77740 1.90828 1.70794 1.28455 1.46344 1.46819 1.06035 1.05601 1.74196 1.75373 1.06470 1.05871 1.21162 1.23549 0.89746 0.96251 0.92100 1.17907 0.91199 0.89008 1.27150 1.22179 0.92752 0.87741 0.98671 1.40051 1.04150 1.03682 1.45692 1.19904 0.80039 1.02703 1.43938 0.87253 1.25525 1.01833 0.95599 0.93658 1.69856 1.35153 1.11471 1.31522 0.85662 0.79571 0.78745 0.79432 1.19654 1.19953 1.18708 1.18471 0.86744 0.92264 1.08617 1.19897 0.96928 0.91459 1.04563 1.20500 0.91927 0.98276 1.04958 1.20684 0.97417 0.93538 1.06557 1.20579 0.96028 0.94088 0.98623 1.18797 0.92090 0.91890 1.04569 0.92641 0.92644 0.87846 0.84778 0.85347 0.85208 0.85027 0.79263 0.88093 0.80484 0.90691 0.87409 0.87410 0.87577 0.85771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.28 -3.93 8.57 -40.59 -0.35 -4.28 16 3 C 0.19 2.40 6.70 -38.69 -0.26 2.14 16 4 C -0.22 -2.04 9.03 -39.48 -0.36 -2.39 16 5 C -0.06 -0.43 10.03 -39.53 -0.40 -0.83 16 6 C -0.17 -1.36 10.02 -39.63 -0.40 -1.75 16 7 C -0.05 -0.50 9.54 -39.19 -0.37 -0.88 16 8 C -0.16 -2.25 5.89 -104.85 -0.62 -2.86 16 9 C 0.57 10.23 7.88 -12.49 -0.10 10.13 16 10 O -0.49 -10.88 15.50 -16.64 -0.26 -11.14 16 11 N -0.59 -9.89 6.21 30.45 0.19 -9.70 16 12 N -0.28 -5.78 9.81 32.08 0.31 -5.47 16 13 C 0.19 3.69 10.98 -14.78 -0.16 3.53 16 14 C -0.24 -5.52 6.27 -103.27 -0.65 -6.16 16 15 C 0.13 3.12 9.85 -16.29 -0.16 2.96 16 16 N -0.27 -6.88 2.90 -59.47 -0.17 -7.05 16 17 C -0.34 -8.30 9.89 -15.00 -0.15 -8.45 16 18 H 0.11 2.56 7.85 -52.49 -0.41 2.15 16 19 C 0.04 1.00 5.34 -17.50 -0.09 0.90 16 20 N -0.85 -20.29 10.86 55.49 0.60 -19.69 16 21 Si 0.94 17.85 29.57 -169.99 -5.03 12.83 16 22 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 23 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 24 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 25 C 0.05 1.13 6.73 -83.82 -0.56 0.56 16 26 C -0.11 -2.36 9.93 -39.42 -0.39 -2.75 16 27 C -0.14 -2.70 10.02 -39.53 -0.40 -3.09 16 28 C -0.16 -3.31 10.03 -39.54 -0.40 -3.71 16 29 C -0.07 -1.69 9.81 -39.35 -0.39 -2.08 16 30 C -0.07 -1.64 6.25 -104.90 -0.66 -2.29 16 31 H 0.06 0.37 7.65 -51.93 -0.40 -0.03 16 32 H 0.05 0.37 7.68 -51.93 -0.40 -0.03 16 33 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.13 0.89 6.30 -52.49 -0.33 0.56 16 35 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 36 H 0.13 0.72 8.06 -52.48 -0.42 0.29 16 37 H 0.13 1.04 6.40 -52.49 -0.34 0.70 16 38 H 0.37 4.71 6.68 -182.60 -1.22 3.49 16 39 H 0.10 1.59 8.03 -52.49 -0.42 1.17 16 40 H 0.18 4.07 6.35 -52.49 -0.33 3.74 16 41 H 0.28 6.22 8.31 -40.82 -0.34 5.88 16 42 H 0.11 2.17 8.06 -52.48 -0.42 1.74 16 43 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 44 H 0.11 1.88 8.06 -52.49 -0.42 1.45 16 45 H 0.12 2.91 7.23 -52.49 -0.38 2.53 16 LS Contribution 389.66 15.07 5.87 5.87 Total: -1.00 -32.69 389.66 -10.24 -42.92 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -5.90 Total: 11.56 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -5.51 Total: -15.85 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.93 Total: -41.90 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.61 Total: -15.42 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.83 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.69 -10.24 -42.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006389328.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.734 kcal (2) G-P(sol) polarization free energy of solvation -32.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds