Wall clock time and date at job start Tue Mar 31 2020 06:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38334 * 119.86681 * 2 1 4 4 C 1.37997 * 120.12698 * 180.02562 * 3 2 1 5 5 C 1.39424 * 119.86795 * 359.97438 * 4 3 2 6 6 C 1.48240 * 120.12521 * 179.97438 * 5 4 3 7 7 C 1.39597 * 119.49323 * 180.27836 * 6 5 4 8 8 C 1.38062 * 119.42878 * 180.20847 * 7 6 5 9 9 C 1.50703 * 120.76990 * 179.79648 * 8 7 6 10 10 F 1.39905 * 109.47157 * 359.71904 * 9 8 7 11 11 F 1.39900 * 109.47159 * 239.72204 * 9 8 7 12 12 F 1.39897 * 109.47274 * 119.71896 * 9 8 7 13 13 C 1.40125 * 118.46031 * 359.52347 * 8 7 6 14 14 C 1.43203 * 120.51121 * 180.27131 * 13 8 7 15 15 N 8.92897 * 144.37069 * 0.06986 * 3 1 2 16 16 C 1.40739 * 118.97363 * 0.25176 * 13 8 7 17 17 S 1.76194 * 119.77265 * 179.97438 * 16 13 8 18 18 C 1.76205 * 100.00205 * 179.97438 * 17 16 13 19 19 H 1.07998 * 120.00000 * 0.02562 * 18 17 16 20 20 C 1.38800 * 119.99931 * 180.02562 * 18 17 16 21 21 N 1.31539 * 120.00291 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99596 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46972 * 60.00359 * 22 20 18 24 24 H 1.48496 * 109.46747 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47412 * 300.00164 * 22 20 18 26 26 N 1.32338 * 120.45965 * 359.97438 * 16 13 8 27 27 C 1.39415 * 119.74479 * 0.25958 * 5 4 3 28 28 C 1.37993 * 119.86718 * 359.46491 * 27 5 4 29 29 H 1.09004 * 109.47292 * 90.00134 * 1 2 3 30 30 H 1.09003 * 109.46766 * 210.00042 * 1 2 3 31 31 H 1.09002 * 109.46969 * 330.00021 * 1 2 3 32 32 H 1.07995 * 119.93906 * 359.97438 * 3 2 1 33 33 H 1.07997 * 120.06896 * 179.97438 * 4 3 2 34 34 H 1.08007 * 120.29073 * 0.02562 * 7 6 5 35 35 H 0.97004 * 120.00303 * 179.97438 * 21 20 18 36 36 H 1.08001 * 120.07065 * 179.74407 * 27 5 4 37 37 H 1.08005 * 119.94001 * 180.27757 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1996 0.0000 4 6 3.5759 1.2059 -0.0005 5 6 4.2757 0.0000 -0.0005 6 6 5.7581 0.0001 -0.0017 7 6 6.4454 -1.2150 -0.0076 8 6 7.8260 -1.2134 -0.0043 9 6 8.5985 -2.5073 -0.0058 10 9 7.7050 -3.5839 -0.0044 11 9 9.4059 -2.5699 1.1350 12 9 9.4018 -2.5696 -1.1495 13 6 8.4924 0.0193 -0.0053 14 6 9.9234 0.0722 -0.0078 15 7 11.0587 0.1142 -0.0063 16 6 7.7335 1.2045 -0.0042 17 16 8.5496 2.7661 -0.0047 18 6 7.1535 3.8411 -0.0038 19 1 6.1551 3.4295 -0.0027 20 6 7.3370 5.2169 -0.0044 21 7 8.5531 5.7183 -0.0053 22 14 5.8569 6.3565 -0.0041 23 1 5.0383 6.1044 1.2090 24 1 6.3189 7.7678 -0.0056 25 1 5.0369 6.1034 -1.2160 26 7 6.4110 1.1544 -0.0028 27 6 3.5760 -1.2058 -0.0055 28 6 2.1961 -1.1996 0.0008 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6528 2.1330 -0.0004 33 1 4.1127 2.1430 -0.0010 34 1 5.9019 -2.1483 -0.0117 35 1 8.6814 6.6798 -0.0061 36 1 4.1127 -2.1430 -0.0097 37 1 1.6528 -2.1331 0.0016 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006546607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:02 Heat of formation + Delta-G solvation = -71.054143 kcal Electronic energy + Delta-G solvation = -28945.762234 eV Core-core repulsion = 24363.972322 eV Total energy + Delta-G solvation = -4581.789912 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 364.055 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.17382 -47.70002 -47.61299 -40.23359 -38.87435 -36.24192 -33.74466 -33.11161 -32.96220 -31.00856 -30.66290 -27.40272 -26.49230 -25.99699 -24.20629 -22.97381 -22.04286 -21.00082 -19.40210 -18.66606 -18.48712 -18.10794 -17.87320 -16.51283 -16.16789 -15.51923 -15.20693 -14.88881 -14.77149 -14.68424 -14.38195 -14.26081 -14.08905 -14.05615 -13.83251 -13.77586 -13.73935 -13.50823 -13.29753 -12.99980 -12.94431 -12.61283 -12.33644 -12.19602 -12.08232 -12.00763 -11.54810 -11.33004 -11.31562 -11.19404 -10.95447 -10.40482 -10.27320 -9.84034 -9.32756 -9.22316 -9.18404 -8.91477 -8.19626 -7.17425 -6.75746 -4.47536 0.31865 1.04574 1.45374 1.54893 2.45598 2.67599 2.94852 3.03551 3.06448 3.10134 3.22269 3.60701 3.73734 3.74079 3.96387 4.07569 4.07992 4.40027 4.43758 4.72091 4.72689 4.80911 4.87095 5.01256 5.09442 5.18532 5.34024 5.39413 5.43990 5.47960 5.62175 5.73177 5.78876 5.90919 5.99444 6.14196 6.28755 6.54253 6.62314 6.65199 6.98885 7.29347 7.78615 8.06835 8.12769 8.74771 10.30687 Molecular weight = 364.06amu Principal moments of inertia in cm(-1) A = 0.005916 B = 0.005336 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4732.010147 B = 5246.576847 C = 9798.788911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.077 4.077 3 C -0.129 4.129 4 C -0.065 4.065 5 C -0.055 4.055 6 C 0.225 3.775 7 C -0.184 4.184 8 C -0.063 4.063 9 C 0.508 3.492 10 F -0.173 7.173 11 F -0.171 7.171 12 F -0.171 7.171 13 C -0.079 4.079 14 C 0.255 3.745 15 N -0.402 5.402 16 C 0.135 3.865 17 S 0.177 5.823 18 C -0.545 4.545 19 H 0.115 0.885 20 C 0.077 3.923 21 N -0.861 5.861 22 Si 0.933 3.067 23 H -0.266 1.266 24 H -0.280 1.280 25 H -0.266 1.266 26 N -0.452 5.452 27 C -0.091 4.091 28 C -0.129 4.129 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.124 0.876 33 H 0.142 0.858 34 H 0.148 0.852 35 H 0.280 0.720 36 H 0.129 0.871 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.492 -12.842 -0.023 17.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.077 4.077 3 C -0.147 4.147 4 C -0.084 4.084 5 C -0.056 4.056 6 C 0.076 3.924 7 C -0.212 4.212 8 C -0.075 4.075 9 C 0.454 3.546 10 F -0.154 7.154 11 F -0.152 7.152 12 F -0.152 7.152 13 C -0.098 4.098 14 C -0.060 4.060 15 N -0.078 5.078 16 C -0.115 4.115 17 S 0.438 5.562 18 C -0.692 4.692 19 H 0.133 0.867 20 C -0.135 4.135 21 N -0.493 5.493 22 Si 0.757 3.243 23 H -0.191 1.191 24 H -0.205 1.205 25 H -0.191 1.191 26 N -0.164 5.164 27 C -0.111 4.111 28 C -0.147 4.147 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.142 0.858 33 H 0.160 0.840 34 H 0.166 0.834 35 H 0.091 0.909 36 H 0.146 0.854 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.641 -11.101 -0.021 14.703 hybrid contribution -1.849 -0.612 -0.006 1.948 sum -11.490 -11.713 -0.027 16.408 Atomic orbital electron populations 1.20819 0.91341 1.02740 1.02303 1.20050 0.96018 0.93303 0.98360 1.21052 0.94107 0.97620 1.01882 1.21508 0.93725 0.98642 0.94529 1.18462 0.89539 0.93923 1.03641 1.19884 0.92927 0.88146 0.91417 1.21318 0.91578 1.00000 1.08342 1.19940 0.94661 0.90327 1.02593 1.18207 0.77785 0.84393 0.74255 1.93167 1.67850 1.58153 1.96243 1.93243 1.74389 1.96685 1.50879 1.93243 1.74616 1.96685 1.50653 1.15874 0.85421 0.92772 1.15730 1.25091 0.92099 0.94661 0.94166 1.81135 1.11447 1.06194 1.09067 1.24326 0.91769 0.99856 0.95535 1.83926 1.10253 0.87419 1.74605 1.23563 0.95349 0.92207 1.58082 0.86746 1.25253 0.97778 0.97644 0.92788 1.69913 1.21091 1.14667 1.43640 0.85963 0.80553 0.78102 0.79679 1.19083 1.20535 1.19089 1.68250 1.07276 1.26715 1.14169 1.21232 0.94159 0.97181 0.98480 1.20875 0.93741 0.97509 1.02609 0.91132 0.91587 0.91503 0.85777 0.84003 0.83423 0.90949 0.85360 0.85856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 10.01 36.01 0.36 -0.50 16 2 C -0.08 -0.79 5.88 -104.55 -0.62 -1.41 16 3 C -0.13 -1.54 9.68 -39.63 -0.38 -1.92 16 4 C -0.07 -0.94 9.57 -39.23 -0.38 -1.31 16 5 C -0.05 -0.78 5.88 -104.91 -0.62 -1.39 16 6 C 0.23 3.66 6.73 -82.91 -0.56 3.10 16 7 C -0.18 -2.64 8.83 -39.14 -0.35 -2.98 16 8 C -0.06 -1.00 5.42 -103.98 -0.56 -1.57 16 9 C 0.51 7.44 2.91 36.01 0.10 7.54 16 10 F -0.17 -2.18 16.06 2.25 0.04 -2.14 16 11 F -0.17 -2.63 16.61 2.25 0.04 -2.59 16 12 F -0.17 -2.63 16.61 2.25 0.04 -2.59 16 13 C -0.08 -1.47 5.77 -106.32 -0.61 -2.09 16 14 C 0.26 5.01 12.36 -22.47 -0.28 4.74 16 15 N -0.40 -8.24 18.54 41.84 0.78 -7.46 16 16 C 0.14 2.79 7.00 -16.39 -0.11 2.68 16 17 S 0.18 4.19 20.63 -107.50 -2.22 1.97 16 18 C -0.54 -13.59 9.26 30.94 0.29 -13.31 16 19 H 0.11 2.77 6.54 -52.49 -0.34 2.42 16 20 C 0.08 1.92 5.49 -17.47 -0.10 1.82 16 21 N -0.86 -22.63 13.22 55.49 0.73 -21.89 16 22 Si 0.93 19.13 29.55 -169.99 -5.02 14.11 16 23 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 24 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 26 N -0.45 -8.83 7.48 -8.23 -0.06 -8.90 16 27 C -0.09 -1.03 9.41 -39.23 -0.37 -1.40 16 28 C -0.13 -1.29 9.68 -39.63 -0.38 -1.68 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 31 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 32 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.14 2.29 7.52 -52.49 -0.39 1.89 16 34 H 0.15 1.63 5.34 -52.48 -0.28 1.35 16 35 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 36 H 0.13 1.15 6.16 -52.49 -0.32 0.83 16 37 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 LS Contribution 358.21 15.07 5.40 5.40 Total: -1.00 -27.04 358.21 -7.43 -34.47 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -2.58 Total: -0.70 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -4.56 Total: -9.67 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 1.45 Total: -38.25 kcal Atomic # 9 Polarization: -7.44 SS G_CDS: 0.11 Total: -7.33 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.11 kcal Atomic # 16 Polarization: 4.19 SS G_CDS: -2.22 Total: 1.97 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -27.04 -7.43 -34.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006546607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.582 kcal (2) G-P(sol) polarization free energy of solvation -27.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds