Wall clock time and date at job start Tue Mar 31 2020 06:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38334 * 119.86681 * 2 1 4 4 C 1.37997 * 120.12698 * 180.02562 * 3 2 1 5 5 C 1.39424 * 119.86795 * 359.97438 * 4 3 2 6 6 C 1.48240 * 120.12521 * 179.97438 * 5 4 3 7 7 C 1.39597 * 119.49323 * 180.27836 * 6 5 4 8 8 C 1.38062 * 119.42878 * 180.20847 * 7 6 5 9 9 C 1.50703 * 120.76990 * 179.79648 * 8 7 6 10 10 F 1.39905 * 109.47157 * 359.71904 * 9 8 7 11 11 F 1.39900 * 109.47159 * 239.72204 * 9 8 7 12 12 F 1.39897 * 109.47274 * 119.71896 * 9 8 7 13 13 C 1.40125 * 118.46031 * 359.52347 * 8 7 6 14 14 C 1.43203 * 120.51121 * 180.27131 * 13 8 7 15 15 N 8.92897 * 144.37069 * 0.06986 * 3 1 2 16 16 C 1.40739 * 118.97363 * 0.25176 * 13 8 7 17 17 S 1.76194 * 119.77265 * 179.97438 * 16 13 8 18 18 C 1.76205 * 100.00205 * 179.97438 * 17 16 13 19 19 H 1.07998 * 120.00000 * 0.02562 * 18 17 16 20 20 C 1.38800 * 119.99931 * 180.02562 * 18 17 16 21 21 N 1.31539 * 120.00291 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99596 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46972 * 60.00359 * 22 20 18 24 24 H 1.48496 * 109.46747 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47412 * 300.00164 * 22 20 18 26 26 N 1.32338 * 120.45965 * 359.97438 * 16 13 8 27 27 C 1.39415 * 119.74479 * 0.25958 * 5 4 3 28 28 C 1.37993 * 119.86718 * 359.46491 * 27 5 4 29 29 H 1.09004 * 109.47292 * 90.00134 * 1 2 3 30 30 H 1.09003 * 109.46766 * 210.00042 * 1 2 3 31 31 H 1.09002 * 109.46969 * 330.00021 * 1 2 3 32 32 H 1.07995 * 119.93906 * 359.97438 * 3 2 1 33 33 H 1.07997 * 120.06896 * 179.97438 * 4 3 2 34 34 H 1.08007 * 120.29073 * 0.02562 * 7 6 5 35 35 H 0.97004 * 120.00303 * 179.97438 * 21 20 18 36 36 H 1.08001 * 120.07065 * 179.74407 * 27 5 4 37 37 H 1.08005 * 119.94001 * 180.27757 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1996 0.0000 4 6 3.5759 1.2059 -0.0005 5 6 4.2757 0.0000 -0.0005 6 6 5.7581 0.0001 -0.0017 7 6 6.4454 -1.2150 -0.0076 8 6 7.8260 -1.2134 -0.0043 9 6 8.5985 -2.5073 -0.0058 10 9 7.7050 -3.5839 -0.0044 11 9 9.4059 -2.5699 1.1350 12 9 9.4018 -2.5696 -1.1495 13 6 8.4924 0.0193 -0.0053 14 6 9.9234 0.0722 -0.0078 15 7 11.0587 0.1142 -0.0063 16 6 7.7335 1.2045 -0.0042 17 16 8.5496 2.7661 -0.0047 18 6 7.1535 3.8411 -0.0038 19 1 6.1551 3.4295 -0.0027 20 6 7.3370 5.2169 -0.0044 21 7 8.5531 5.7183 -0.0053 22 14 5.8569 6.3565 -0.0041 23 1 5.0383 6.1044 1.2090 24 1 6.3189 7.7678 -0.0056 25 1 5.0369 6.1034 -1.2160 26 7 6.4110 1.1544 -0.0028 27 6 3.5760 -1.2058 -0.0055 28 6 2.1961 -1.1996 0.0008 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6528 2.1330 -0.0004 33 1 4.1127 2.1430 -0.0010 34 1 5.9019 -2.1483 -0.0117 35 1 8.6814 6.6798 -0.0061 36 1 4.1127 -2.1430 -0.0097 37 1 1.6528 -2.1331 0.0016 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006546607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:01 Heat of formation + Delta-G solvation = -82.907367 kcal Electronic energy + Delta-G solvation = -28946.276228 eV Core-core repulsion = 24363.972322 eV Total energy + Delta-G solvation = -4582.303906 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 364.055 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.36535 -48.84284 -48.84190 -41.59576 -39.91207 -37.81676 -34.99137 -34.78348 -34.38485 -32.04275 -31.74613 -28.61240 -27.81351 -27.55734 -25.54241 -24.12519 -23.09736 -22.01813 -20.89338 -20.02794 -19.69014 -19.49576 -19.32612 -17.85539 -17.32740 -17.03921 -16.87121 -16.05589 -15.96813 -15.74338 -15.58636 -15.55715 -15.32834 -15.23574 -14.98462 -14.95677 -14.90356 -14.68600 -14.36197 -14.31448 -14.27226 -14.11912 -13.62263 -13.53842 -13.16401 -13.05424 -12.93415 -12.91621 -12.89533 -12.21955 -12.01217 -11.85091 -11.74651 -11.30510 -10.98680 -10.89843 -10.66743 -9.82557 -9.32853 -8.87783 -8.57735 -6.38321 -1.02327 -0.31989 0.43167 0.54980 0.88940 1.31714 1.33249 1.40406 1.40918 1.49731 1.78627 2.05931 2.34628 2.39530 2.58351 2.70090 2.86307 2.91310 2.98839 3.18679 3.31532 3.70528 3.81036 3.90842 4.05740 4.12131 4.18154 4.26252 4.52670 4.57136 4.61835 4.86196 4.93416 4.95642 5.10808 5.22350 5.33631 5.44340 5.53305 5.61934 5.72959 6.09302 6.20360 6.22610 6.64375 6.89691 8.50970 Molecular weight = 364.06amu Principal moments of inertia in cm(-1) A = 0.005916 B = 0.005336 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4732.010147 B = 5246.576847 C = 9798.788911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.068 4.068 3 C -0.139 4.139 4 C -0.087 4.087 5 C -0.084 4.084 6 C 0.223 3.777 7 C -0.145 4.145 8 C -0.065 4.065 9 C 0.518 3.482 10 F -0.153 7.153 11 F -0.174 7.174 12 F -0.174 7.174 13 C -0.084 4.084 14 C 0.262 3.738 15 N -0.421 5.421 16 C 0.147 3.853 17 S 0.085 5.915 18 C -0.553 4.553 19 H 0.111 0.889 20 C 0.027 3.973 21 N -0.905 5.905 22 Si 0.995 3.005 23 H -0.260 1.260 24 H -0.275 1.275 25 H -0.260 1.260 26 N -0.476 5.476 27 C -0.081 4.081 28 C -0.125 4.125 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.133 0.867 33 H 0.110 0.890 34 H 0.196 0.804 35 H 0.280 0.720 36 H 0.159 0.841 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.478 -16.689 -0.026 23.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.068 4.068 3 C -0.157 4.157 4 C -0.106 4.106 5 C -0.085 4.085 6 C 0.076 3.924 7 C -0.171 4.171 8 C -0.078 4.078 9 C 0.463 3.537 10 F -0.134 7.134 11 F -0.156 7.156 12 F -0.156 7.156 13 C -0.102 4.102 14 C -0.053 4.053 15 N -0.097 5.097 16 C -0.104 4.104 17 S 0.341 5.659 18 C -0.701 4.701 19 H 0.129 0.871 20 C -0.179 4.179 21 N -0.539 5.539 22 Si 0.816 3.184 23 H -0.184 1.184 24 H -0.200 1.200 25 H -0.184 1.184 26 N -0.189 5.189 27 C -0.100 4.100 28 C -0.143 4.143 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.151 0.849 33 H 0.128 0.872 34 H 0.213 0.787 35 H 0.089 0.911 36 H 0.176 0.824 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -13.674 -15.047 -0.023 20.332 hybrid contribution -0.895 0.153 -0.007 0.908 sum -14.569 -14.894 -0.030 20.835 Atomic orbital electron populations 1.20907 0.88928 1.03993 1.03389 1.20477 0.97794 0.92731 0.95828 1.21216 0.93128 0.99229 1.02159 1.21401 0.94980 0.97841 0.96403 1.18511 0.88099 0.95252 1.06656 1.20464 0.94402 0.87740 0.89778 1.21873 0.90892 1.01095 1.03226 1.20134 0.95409 0.90065 1.02147 1.17889 0.77699 0.84080 0.74034 1.93210 1.67055 1.56959 1.96138 1.93247 1.74543 1.96676 1.51094 1.93247 1.74766 1.96676 1.50865 1.15963 0.84954 0.93381 1.15902 1.25267 0.92348 0.94043 0.93619 1.81119 1.12058 1.06858 1.09691 1.23952 0.92400 0.98646 0.95363 1.83973 1.11901 0.90263 1.79737 1.23618 0.95043 0.92643 1.58747 0.87084 1.26144 1.00338 0.98975 0.92451 1.70032 1.22990 1.14701 1.46176 0.85027 0.77266 0.76161 0.79913 1.18415 1.20005 1.18424 1.68211 1.06849 1.28984 1.14826 1.21547 0.94939 0.96776 0.96711 1.21335 0.93354 0.98804 1.00794 0.89950 0.89620 0.91100 0.84868 0.87169 0.78691 0.91052 0.82370 0.82138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 10.01 71.24 0.71 -0.47 16 2 C -0.07 -1.13 5.88 -19.82 -0.12 -1.25 16 3 C -0.14 -3.09 9.68 22.24 0.22 -2.87 16 4 C -0.09 -2.48 9.57 22.50 0.22 -2.27 16 5 C -0.08 -2.21 5.88 -20.05 -0.12 -2.32 16 6 C 0.22 6.90 6.73 42.01 0.28 7.18 16 7 C -0.15 -3.62 8.83 22.56 0.20 -3.42 16 8 C -0.07 -1.93 5.42 -19.45 -0.11 -2.04 16 9 C 0.52 13.64 2.91 71.24 0.21 13.84 16 10 F -0.15 -3.12 16.06 44.97 0.72 -2.40 16 11 F -0.17 -4.99 16.61 44.97 0.75 -4.25 16 12 F -0.17 -4.99 16.61 44.97 0.75 -4.24 16 13 C -0.08 -3.15 5.77 -20.96 -0.12 -3.27 16 14 C 0.26 10.53 12.36 88.33 1.09 11.62 16 15 N -0.42 -17.70 18.54 19.01 0.35 -17.34 16 16 C 0.15 6.30 7.00 85.23 0.60 6.90 16 17 S 0.08 4.32 20.63 -56.49 -1.17 3.15 16 18 C -0.55 -29.49 9.26 67.95 0.63 -28.86 16 19 H 0.11 5.76 6.54 -2.91 -0.02 5.74 16 20 C 0.03 1.43 5.49 84.87 0.47 1.90 16 21 N -0.90 -50.66 13.22 21.64 0.29 -50.37 16 22 Si 1.00 40.97 29.55 68.60 2.03 42.99 16 23 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 24 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 25 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 26 N -0.48 -19.07 7.48 -179.94 -1.35 -20.41 16 27 C -0.08 -1.43 9.41 22.50 0.21 -1.21 16 28 C -0.13 -1.82 9.68 22.24 0.22 -1.61 16 29 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.08 0.59 8.08 -2.39 -0.02 0.57 16 31 H 0.07 0.70 8.08 -2.39 -0.02 0.69 16 32 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 33 H 0.11 3.79 7.52 -2.91 -0.02 3.77 16 34 H 0.20 3.03 5.34 -2.91 -0.02 3.01 16 35 H 0.28 14.61 8.31 -92.70 -0.77 13.84 16 36 H 0.16 1.74 6.16 -2.91 -0.02 1.72 16 37 H 0.16 1.23 8.06 -2.91 -0.02 1.20 16 Total: -1.00 -64.69 358.21 8.12 -56.56 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: 1.17 Total: 4.46 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: 4.58 Total: -8.16 kcal Atomic # 7 Polarization: -87.42 SS G_CDS: -0.71 Total: -88.13 kcal Atomic # 9 Polarization: -13.10 SS G_CDS: 2.22 Total: -10.88 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 42.99 kcal Atomic # 16 Polarization: 4.32 SS G_CDS: -1.17 Total: 3.15 kcal Total: -64.69 8.12 -56.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006546607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.345 kcal (2) G-P(sol) polarization free energy of solvation -64.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds