Wall clock time and date at job start Tue Mar 31 2020 05:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42895 * 109.47115 * 2 1 4 4 C 1.35693 * 116.99718 * 180.02562 * 3 2 1 5 5 C 1.38661 * 120.14784 * 0.02562 * 4 3 2 6 6 C 1.38091 * 120.08508 * 180.02562 * 5 4 3 7 7 C 1.38537 * 120.38272 * 359.97438 * 6 5 4 8 8 C 1.37815 * 120.29003 * 0.02562 * 7 6 5 9 9 C 1.39670 * 119.90887 * 0.02562 * 8 7 6 10 10 C 1.47678 * 120.18538 * 179.97438 * 9 8 7 11 11 O 1.21863 * 119.99753 * 174.69008 * 10 9 8 12 12 C 1.41779 * 119.99967 * 354.68408 * 10 9 8 13 13 C 1.41815 * 126.81898 * 274.58192 * 12 10 9 14 14 C 1.50704 * 126.11191 * 359.97438 * 13 12 10 15 15 C 1.34456 * 107.78002 * 179.83145 * 13 12 10 16 16 C 1.50701 * 125.17268 * 180.15814 * 15 13 12 17 17 C 1.50698 * 109.47502 * 270.30011 * 16 15 13 18 18 H 1.08001 * 119.99336 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00351 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99885 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00275 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46954 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47121 * 120.00166 * 21 19 17 24 24 H 1.48494 * 109.47494 * 240.00540 * 21 19 17 25 25 N 1.37054 * 109.65282 * 0.43988 * 15 13 12 26 26 C 1.36629 * 131.33125 * 179.76381 * 25 15 13 27 27 C 1.35089 * 120.75105 * 179.97438 * 26 25 15 28 28 C 1.40220 * 120.36198 * 359.95740 * 27 26 25 29 29 C 1.36451 * 119.43678 * 0.02602 * 28 27 26 30 30 C 1.36905 * 108.75050 * 359.72052 * 25 15 13 31 31 H 1.08994 * 109.47336 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46856 * 300.00586 * 1 2 3 33 33 H 1.08997 * 109.47199 * 59.99948 * 1 2 3 34 34 H 1.09002 * 109.46856 * 239.99414 * 2 1 3 35 35 H 1.09000 * 109.46501 * 119.99864 * 2 1 3 36 36 H 1.07999 * 119.96084 * 359.97438 * 5 4 3 37 37 H 1.07999 * 119.81201 * 179.69467 * 6 5 4 38 38 H 1.07997 * 119.85645 * 179.97438 * 7 6 5 39 39 H 1.08006 * 120.04512 * 179.97438 * 8 7 6 40 40 H 1.08996 * 109.46379 * 90.02574 * 14 13 12 41 41 H 1.08997 * 109.47098 * 210.02930 * 14 13 12 42 42 H 1.09001 * 109.46797 * 330.03365 * 14 13 12 43 43 H 1.09001 * 109.47198 * 30.29878 * 16 15 13 44 44 H 1.08998 * 109.47168 * 150.29700 * 16 15 13 45 45 H 0.96996 * 120.00355 * 179.97438 * 20 19 17 46 46 H 1.08002 * 119.62434 * 359.97400 * 26 25 15 47 47 H 1.07996 * 119.81455 * 179.97438 * 27 26 25 48 48 H 1.08006 * 120.28318 * 180.02562 * 28 27 26 49 49 H 1.07998 * 120.33686 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3516 1.5250 -0.0005 5 6 4.1990 0.4274 -0.0016 6 6 5.5678 0.6098 -0.0016 7 6 6.1046 1.8870 -0.0011 8 6 5.2768 2.9888 -0.0001 9 6 3.8905 2.8185 0.0010 10 6 2.9978 3.9949 0.0028 11 8 1.7923 3.8451 -0.0940 12 6 3.5433 5.2985 0.1170 13 6 3.8712 5.9805 1.3164 14 6 3.7017 5.4476 2.7159 15 6 4.3633 7.1861 0.9818 16 6 4.8388 8.2311 1.9581 17 6 3.6860 9.1235 2.3398 18 1 2.7069 8.9509 1.9179 19 6 3.8810 10.1596 3.2283 20 7 5.0732 10.3694 3.7424 21 14 2.4522 11.2662 3.7009 22 1 1.2265 10.8231 2.9892 23 1 2.2288 11.1873 5.1669 24 1 2.7653 12.6677 3.3226 25 7 4.3610 7.3227 -0.3819 26 6 4.7549 8.3546 -1.1861 27 6 4.6575 8.2589 -2.5301 28 6 4.1494 7.0941 -3.1227 29 6 3.7530 6.0565 -2.3302 30 6 3.8614 6.1758 -0.9381 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 1.8932 -0.5138 0.8900 36 1 3.7881 -0.5713 -0.0016 37 1 6.2238 -0.2481 0.0026 38 1 7.1763 2.0198 -0.0007 39 1 5.6995 3.9828 0.0008 40 1 4.6094 4.9255 3.0182 41 1 3.5139 6.2755 3.3996 42 1 2.8592 4.7565 2.7419 43 1 5.2312 7.7431 2.8502 44 1 5.6240 8.8295 1.4961 45 1 5.2105 11.0985 4.3672 46 1 5.1486 9.2570 -0.7422 47 1 4.9730 9.0840 -3.1514 48 1 4.0725 7.0188 -4.1974 49 1 3.3599 5.1525 -2.7713 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006550072.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:19 Heat of formation + Delta-G solvation = 16.495229 kcal Electronic energy + Delta-G solvation = -32366.529695 eV Core-core repulsion = 28224.732178 eV Total energy + Delta-G solvation = -4141.797517 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.162 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.83196 -40.39020 -38.35826 -37.36395 -36.45289 -33.41801 -32.78528 -32.12233 -31.30234 -31.16192 -29.63071 -29.24120 -27.29251 -26.23654 -24.44568 -24.15923 -23.44334 -22.13384 -21.66656 -21.54131 -19.43709 -18.99634 -18.14187 -16.69472 -16.48544 -16.27539 -16.14832 -16.02865 -15.70168 -15.12505 -14.88277 -14.71347 -14.55408 -14.46071 -14.08571 -13.92502 -13.65493 -13.37248 -12.96454 -12.75992 -12.56437 -12.51989 -12.23350 -12.09104 -12.04674 -12.00687 -11.72645 -11.61022 -11.32807 -11.29483 -11.15515 -11.02418 -10.90209 -10.75447 -10.65530 -10.57962 -9.84777 -9.81361 -9.44580 -9.31689 -9.06479 -8.51402 -8.28886 -7.74388 -6.66240 -6.09536 -4.16854 0.79586 1.21436 1.36128 1.80016 2.64656 3.07223 3.24175 3.25814 3.33847 3.37302 3.43043 3.80886 3.89664 4.39666 4.45489 4.63066 4.72494 4.83505 4.92845 4.98650 5.01097 5.09098 5.12909 5.22293 5.22883 5.33683 5.35727 5.36327 5.51435 5.62322 5.64320 5.74130 5.85788 5.89325 5.97241 6.08239 6.15624 6.23465 6.27160 6.28982 6.34819 6.39714 6.41812 6.53106 6.65054 6.67704 6.71819 6.96492 7.17798 7.33385 7.36143 7.42998 7.75413 7.83708 7.91889 8.01400 8.22174 8.88511 9.48555 10.96620 Molecular weight = 363.16amu Principal moments of inertia in cm(-1) A = 0.010435 B = 0.002985 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.557732 B = 9376.825734 C =10130.948064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.284 6.284 4 C 0.179 3.821 5 C -0.230 4.230 6 C -0.054 4.054 7 C -0.175 4.175 8 C -0.020 4.020 9 C -0.189 4.189 10 C 0.488 3.512 11 O -0.439 6.439 12 C -0.261 4.261 13 C -0.087 4.087 14 C -0.082 4.082 15 C 0.038 3.962 16 C 0.081 3.919 17 C -0.514 4.514 18 H 0.058 0.942 19 C 0.062 3.938 20 N -0.893 5.893 21 Si 0.893 3.107 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.283 1.283 25 N -0.335 5.335 26 C 0.083 3.917 27 C -0.172 4.172 28 C -0.121 4.121 29 C -0.100 4.100 30 C 0.068 3.932 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.139 0.861 40 H 0.061 0.939 41 H 0.081 0.919 42 H 0.053 0.947 43 H 0.047 0.953 44 H 0.025 0.975 45 H 0.263 0.737 46 H 0.164 0.836 47 H 0.140 0.860 48 H 0.127 0.873 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.368 -18.833 -10.748 21.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.196 6.196 4 C 0.132 3.868 5 C -0.249 4.249 6 C -0.072 4.072 7 C -0.194 4.194 8 C -0.038 4.038 9 C -0.191 4.191 10 C 0.365 3.635 11 O -0.314 6.314 12 C -0.269 4.269 13 C -0.089 4.089 14 C -0.140 4.140 15 C -0.070 4.070 16 C 0.044 3.956 17 C -0.553 4.553 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.531 5.531 21 Si 0.721 3.279 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.210 1.210 25 N 0.002 4.998 26 C -0.038 4.038 27 C -0.192 4.192 28 C -0.141 4.141 29 C -0.119 4.119 30 C -0.038 4.038 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.157 0.843 40 H 0.079 0.921 41 H 0.100 0.900 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.043 0.957 45 H 0.072 0.928 46 H 0.182 0.818 47 H 0.158 0.842 48 H 0.145 0.855 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.725 -18.430 -10.696 21.321 hybrid contribution -0.510 0.493 0.216 0.742 sum 0.215 -17.937 -10.480 20.775 Atomic orbital electron populations 1.21744 0.92590 1.02421 1.04039 1.22849 0.96311 0.82352 1.01076 1.86348 1.18102 1.28375 1.86752 1.19205 0.82852 0.93078 0.91699 1.21177 0.94421 0.97796 1.11528 1.21092 0.94186 0.97437 0.94525 1.21044 1.00169 0.92206 1.05939 1.21352 0.91226 0.99859 0.91360 1.20145 0.94873 0.91962 1.12100 1.18059 0.87334 0.86732 0.71384 1.90680 1.16881 1.88874 1.34916 1.18594 1.18129 0.97174 0.93048 1.19024 1.02742 0.93305 0.93862 1.20218 1.00621 1.01081 0.92039 1.21228 1.07297 0.98422 0.80026 1.17937 0.96457 0.90044 0.91173 1.21104 0.95407 1.12615 1.26124 0.92390 1.24970 0.95798 0.97418 0.95835 1.69948 1.21307 1.31129 1.30759 0.86501 0.82680 0.80285 0.78458 1.19622 1.20782 1.20956 1.41420 1.40227 1.11165 1.07019 1.21803 0.98766 0.92384 0.90895 1.20560 1.05817 0.99857 0.92999 1.20855 1.00273 0.93309 0.99705 1.20344 1.01497 0.99991 0.90026 1.18279 1.05676 0.87598 0.92220 0.90609 0.91296 0.91359 0.92166 0.92102 0.85285 0.85671 0.85461 0.84321 0.92074 0.89973 0.92771 0.93463 0.95693 0.92778 0.81838 0.84239 0.85481 0.85176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.28 37.16 0.38 -0.93 16 2 C 0.05 0.48 5.46 37.16 0.20 0.69 16 3 O -0.28 -4.18 8.22 -40.58 -0.33 -4.51 16 4 C 0.18 2.56 6.70 -38.72 -0.26 2.30 16 5 C -0.23 -2.53 9.03 -39.48 -0.36 -2.88 16 6 C -0.05 -0.53 10.03 -39.52 -0.40 -0.93 16 7 C -0.18 -1.92 10.02 -39.63 -0.40 -2.32 16 8 C -0.02 -0.27 9.43 -39.20 -0.37 -0.64 16 9 C -0.19 -2.98 5.89 -104.80 -0.62 -3.60 16 10 C 0.49 9.19 6.43 -34.38 -0.22 8.97 16 11 O -0.44 -9.37 15.93 -16.76 -0.27 -9.64 16 12 C -0.26 -5.12 4.29 -106.19 -0.46 -5.58 16 13 C -0.09 -1.80 6.14 -104.59 -0.64 -2.44 16 14 C -0.08 -1.55 9.74 36.01 0.35 -1.20 16 15 C 0.04 0.84 6.10 -81.59 -0.50 0.35 16 16 C 0.08 2.00 4.84 -29.03 -0.14 1.86 16 17 C -0.51 -13.94 9.09 -34.44 -0.31 -14.25 16 18 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -25.24 13.29 55.43 0.74 -24.51 16 21 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 N -0.34 -6.67 2.92 -56.59 -0.17 -6.83 16 26 C 0.08 1.43 10.65 -16.53 -0.18 1.25 16 27 C -0.17 -2.41 9.98 -39.96 -0.40 -2.81 16 28 C -0.12 -1.65 10.09 -39.48 -0.40 -2.05 16 29 C -0.10 -1.58 10.04 -39.51 -0.40 -1.98 16 30 C 0.07 1.29 6.72 -83.90 -0.56 0.72 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 35 H 0.06 0.50 7.66 -51.93 -0.40 0.11 16 36 H 0.13 1.08 6.30 -52.49 -0.33 0.74 16 37 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 39 H 0.14 1.96 7.17 -52.48 -0.38 1.59 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.08 1.66 7.68 -51.93 -0.40 1.26 16 42 H 0.05 0.98 8.02 -51.93 -0.42 0.57 16 43 H 0.05 1.21 7.66 -51.93 -0.40 0.81 16 44 H 0.02 0.63 7.81 -51.93 -0.41 0.22 16 45 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 46 H 0.16 2.72 7.79 -52.49 -0.41 2.31 16 47 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 48 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 49 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 414.30 15.07 6.24 6.24 Total: -1.00 -32.84 414.30 -11.45 -44.28 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.88 Total: 2.61 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -5.76 Total: -23.88 kcal Atomic # 7 Polarization: -31.91 SS G_CDS: 0.57 Total: -31.34 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.60 Total: -14.15 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.84 -11.45 -44.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006550072.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.777 kcal (2) G-P(sol) polarization free energy of solvation -32.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds