Wall clock time and date at job start Tue Mar 31 2020 05:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42895 * 109.47115 * 2 1 4 4 C 1.35693 * 116.99718 * 180.02562 * 3 2 1 5 5 C 1.38661 * 120.14784 * 0.02562 * 4 3 2 6 6 C 1.38091 * 120.08508 * 180.02562 * 5 4 3 7 7 C 1.38537 * 120.38272 * 359.97438 * 6 5 4 8 8 C 1.37815 * 120.29003 * 0.02562 * 7 6 5 9 9 C 1.39670 * 119.90887 * 0.02562 * 8 7 6 10 10 C 1.47678 * 120.18538 * 179.97438 * 9 8 7 11 11 O 1.21863 * 119.99753 * 174.69008 * 10 9 8 12 12 C 1.41779 * 119.99967 * 354.68408 * 10 9 8 13 13 C 1.41815 * 126.81898 * 274.58192 * 12 10 9 14 14 C 1.50704 * 126.11191 * 359.97438 * 13 12 10 15 15 C 1.34456 * 107.78002 * 179.83145 * 13 12 10 16 16 C 1.50701 * 125.17268 * 180.15814 * 15 13 12 17 17 C 1.50698 * 109.47502 * 270.30011 * 16 15 13 18 18 H 1.08001 * 119.99336 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00351 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99885 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00275 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46954 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47121 * 120.00166 * 21 19 17 24 24 H 1.48494 * 109.47494 * 240.00540 * 21 19 17 25 25 N 1.37054 * 109.65282 * 0.43988 * 15 13 12 26 26 C 1.36629 * 131.33125 * 179.76381 * 25 15 13 27 27 C 1.35089 * 120.75105 * 179.97438 * 26 25 15 28 28 C 1.40220 * 120.36198 * 359.95740 * 27 26 25 29 29 C 1.36451 * 119.43678 * 0.02602 * 28 27 26 30 30 C 1.36905 * 108.75050 * 359.72052 * 25 15 13 31 31 H 1.08994 * 109.47336 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46856 * 300.00586 * 1 2 3 33 33 H 1.08997 * 109.47199 * 59.99948 * 1 2 3 34 34 H 1.09002 * 109.46856 * 239.99414 * 2 1 3 35 35 H 1.09000 * 109.46501 * 119.99864 * 2 1 3 36 36 H 1.07999 * 119.96084 * 359.97438 * 5 4 3 37 37 H 1.07999 * 119.81201 * 179.69467 * 6 5 4 38 38 H 1.07997 * 119.85645 * 179.97438 * 7 6 5 39 39 H 1.08006 * 120.04512 * 179.97438 * 8 7 6 40 40 H 1.08996 * 109.46379 * 90.02574 * 14 13 12 41 41 H 1.08997 * 109.47098 * 210.02930 * 14 13 12 42 42 H 1.09001 * 109.46797 * 330.03365 * 14 13 12 43 43 H 1.09001 * 109.47198 * 30.29878 * 16 15 13 44 44 H 1.08998 * 109.47168 * 150.29700 * 16 15 13 45 45 H 0.96996 * 120.00355 * 179.97438 * 20 19 17 46 46 H 1.08002 * 119.62434 * 359.97400 * 26 25 15 47 47 H 1.07996 * 119.81455 * 179.97438 * 27 26 25 48 48 H 1.08006 * 120.28318 * 180.02562 * 28 27 26 49 49 H 1.07998 * 120.33686 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3516 1.5250 -0.0005 5 6 4.1990 0.4274 -0.0016 6 6 5.5678 0.6098 -0.0016 7 6 6.1046 1.8870 -0.0011 8 6 5.2768 2.9888 -0.0001 9 6 3.8905 2.8185 0.0010 10 6 2.9978 3.9949 0.0028 11 8 1.7923 3.8451 -0.0940 12 6 3.5433 5.2985 0.1170 13 6 3.8712 5.9805 1.3164 14 6 3.7017 5.4476 2.7159 15 6 4.3633 7.1861 0.9818 16 6 4.8388 8.2311 1.9581 17 6 3.6860 9.1235 2.3398 18 1 2.7069 8.9509 1.9179 19 6 3.8810 10.1596 3.2283 20 7 5.0732 10.3694 3.7424 21 14 2.4522 11.2662 3.7009 22 1 1.2265 10.8231 2.9892 23 1 2.2288 11.1873 5.1669 24 1 2.7653 12.6677 3.3226 25 7 4.3610 7.3227 -0.3819 26 6 4.7549 8.3546 -1.1861 27 6 4.6575 8.2589 -2.5301 28 6 4.1494 7.0941 -3.1227 29 6 3.7530 6.0565 -2.3302 30 6 3.8614 6.1758 -0.9381 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 1.8932 -0.5138 0.8900 36 1 3.7881 -0.5713 -0.0016 37 1 6.2238 -0.2481 0.0026 38 1 7.1763 2.0198 -0.0007 39 1 5.6995 3.9828 0.0008 40 1 4.6094 4.9255 3.0182 41 1 3.5139 6.2755 3.3996 42 1 2.8592 4.7565 2.7419 43 1 5.2312 7.7431 2.8502 44 1 5.6240 8.8295 1.4961 45 1 5.2105 11.0985 4.3672 46 1 5.1486 9.2570 -0.7422 47 1 4.9730 9.0840 -3.1514 48 1 4.0725 7.0188 -4.1974 49 1 3.3599 5.1525 -2.7713 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006550072.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:18 Heat of formation + Delta-G solvation = 2.270105 kcal Electronic energy + Delta-G solvation = -32367.146542 eV Core-core repulsion = 28224.732178 eV Total energy + Delta-G solvation = -4142.414364 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.162 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.27494 -41.40267 -39.63372 -38.33372 -37.85271 -35.36919 -34.25276 -32.92801 -32.82196 -32.21921 -30.96062 -30.51470 -28.76740 -27.81062 -25.82456 -25.17929 -24.93043 -23.37855 -22.94074 -22.52893 -20.89073 -20.27158 -19.13905 -18.60264 -17.99720 -17.44526 -17.27883 -17.06172 -16.90628 -16.56190 -16.26811 -16.23183 -15.81553 -15.63669 -15.36075 -14.99268 -14.85158 -14.44164 -14.31049 -14.22190 -14.07052 -13.95017 -13.47487 -13.39763 -13.24810 -13.17454 -12.91437 -12.89583 -12.83790 -12.63558 -12.52646 -12.48590 -12.37006 -12.03753 -11.99862 -11.72360 -11.65958 -11.46031 -11.18726 -10.71747 -10.62852 -10.02116 -9.25772 -9.23095 -8.35030 -7.98697 -6.36138 -0.26145 -0.08793 0.43969 0.45189 1.34526 1.36976 1.42119 1.48982 1.75168 1.89331 2.23520 2.37803 2.59280 2.82323 3.06983 3.30420 3.66812 3.81650 3.89085 3.97586 4.03259 4.04642 4.10796 4.18821 4.22102 4.26937 4.36233 4.36908 4.43498 4.47823 4.56101 4.65763 4.71574 4.78841 4.87050 4.88700 4.91459 4.96604 5.04614 5.11405 5.16588 5.20821 5.22494 5.31657 5.31825 5.37042 5.39503 5.50300 5.66357 5.70695 5.80513 5.90566 6.10008 6.17055 6.44562 6.45683 6.65775 6.72844 7.32630 8.84572 Molecular weight = 363.16amu Principal moments of inertia in cm(-1) A = 0.010435 B = 0.002985 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.557732 B = 9376.825734 C =10130.948064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.039 3.961 3 O -0.318 6.318 4 C 0.165 3.835 5 C -0.225 4.225 6 C -0.037 4.037 7 C -0.173 4.173 8 C -0.029 4.029 9 C -0.221 4.221 10 C 0.491 3.509 11 O -0.483 6.483 12 C -0.286 4.286 13 C -0.094 4.094 14 C -0.075 4.075 15 C -0.003 4.003 16 C 0.101 3.899 17 C -0.526 4.526 18 H 0.040 0.960 19 C 0.018 3.982 20 N -0.920 5.920 21 Si 0.956 3.044 22 H -0.276 1.276 23 H -0.274 1.274 24 H -0.272 1.272 25 N -0.339 5.339 26 C 0.042 3.958 27 C -0.144 4.144 28 C -0.093 4.093 29 C -0.121 4.121 30 C 0.070 3.930 31 H 0.108 0.892 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.161 0.839 37 H 0.169 0.831 38 H 0.153 0.847 39 H 0.123 0.877 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.026 0.974 44 H 0.008 0.992 45 H 0.267 0.733 46 H 0.159 0.841 47 H 0.184 0.816 48 H 0.176 0.824 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.160 -20.838 -13.280 24.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.035 4.035 3 O -0.231 6.231 4 C 0.118 3.882 5 C -0.243 4.243 6 C -0.055 4.055 7 C -0.191 4.191 8 C -0.047 4.047 9 C -0.222 4.222 10 C 0.371 3.629 11 O -0.361 6.361 12 C -0.293 4.293 13 C -0.097 4.097 14 C -0.132 4.132 15 C -0.111 4.111 16 C 0.063 3.937 17 C -0.564 4.564 18 H 0.058 0.942 19 C -0.182 4.182 20 N -0.560 5.560 21 Si 0.781 3.219 22 H -0.201 1.201 23 H -0.200 1.200 24 H -0.197 1.197 25 N -0.002 5.002 26 C -0.079 4.079 27 C -0.163 4.163 28 C -0.114 4.114 29 C -0.140 4.140 30 C -0.037 4.037 31 H 0.127 0.873 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.178 0.822 37 H 0.186 0.814 38 H 0.171 0.829 39 H 0.141 0.859 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.044 0.956 44 H 0.026 0.974 45 H 0.076 0.924 46 H 0.176 0.824 47 H 0.201 0.799 48 H 0.194 0.806 49 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.542 -20.427 -13.221 24.381 hybrid contribution -0.688 1.062 0.807 1.501 sum 0.854 -19.365 -12.414 23.018 Atomic orbital electron populations 1.21793 0.92289 1.04051 1.02551 1.23186 0.96674 0.80749 1.02861 1.86320 1.18658 1.31287 1.86826 1.19430 0.83323 0.93396 0.92051 1.21544 0.94609 0.98073 1.10084 1.21599 0.94248 0.98187 0.91472 1.21369 1.01137 0.91887 1.04710 1.21295 0.90779 1.00304 0.92320 1.19985 0.95186 0.91623 1.15440 1.18356 0.87150 0.87481 0.69878 1.90636 1.18412 1.89386 1.37639 1.18740 1.19520 0.98205 0.92853 1.19222 1.02360 0.93297 0.94839 1.20146 1.01545 1.00295 0.91198 1.20716 1.10855 0.98530 0.81031 1.17507 0.95131 0.90020 0.91041 1.21249 0.95311 1.13485 1.26364 0.94211 1.25704 0.98205 0.98622 0.95641 1.70034 1.22910 1.31820 1.31239 0.85541 0.79349 0.78774 0.78271 1.20131 1.19966 1.19698 1.41462 1.40221 1.12059 1.06452 1.22183 1.01143 0.92253 0.92291 1.21162 1.02484 1.00954 0.91727 1.21452 0.96552 0.91531 1.01857 1.20657 1.02841 1.01797 0.88694 1.18777 1.04407 0.86891 0.93641 0.87331 0.92973 0.92665 0.90033 0.90361 0.82180 0.81395 0.82915 0.85931 0.90186 0.92070 0.92671 0.95581 0.97365 0.92358 0.82406 0.79865 0.80644 0.83773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 10.28 71.98 0.74 -1.78 16 2 C 0.04 0.72 5.46 71.98 0.39 1.11 16 3 O -0.32 -9.50 8.22 -69.28 -0.57 -10.07 16 4 C 0.17 4.67 6.70 22.83 0.15 4.82 16 5 C -0.22 -4.27 9.03 22.34 0.20 -4.07 16 6 C -0.04 -0.59 10.03 22.31 0.22 -0.37 16 7 C -0.17 -3.40 10.02 22.24 0.22 -3.18 16 8 C -0.03 -0.79 9.43 22.52 0.21 -0.58 16 9 C -0.22 -7.19 5.89 -19.98 -0.12 -7.31 16 10 C 0.49 19.71 6.43 25.64 0.16 19.87 16 11 O -0.48 -22.09 15.93 15.97 0.25 -21.83 16 12 C -0.29 -11.96 4.29 -20.88 -0.09 -12.05 16 13 C -0.09 -4.22 6.14 -19.84 -0.12 -4.35 16 14 C -0.07 -3.07 9.74 71.24 0.69 -2.37 16 15 C 0.00 -0.16 6.10 40.88 0.25 0.09 16 16 C 0.10 5.34 4.84 29.10 0.14 5.48 16 17 C -0.53 -30.18 9.09 25.60 0.23 -29.95 16 18 H 0.04 2.37 7.74 -2.91 -0.02 2.35 16 19 C 0.02 0.99 5.46 84.65 0.46 1.45 16 20 N -0.92 -53.74 13.29 21.45 0.28 -53.46 16 21 Si 0.96 44.75 29.54 68.60 2.03 46.77 16 22 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 23 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 25 N -0.34 -14.14 2.92 -332.96 -0.97 -15.11 16 26 C 0.04 1.47 10.65 83.22 0.89 2.35 16 27 C -0.14 -3.60 9.98 22.03 0.22 -3.38 16 28 C -0.09 -2.21 10.09 22.33 0.23 -1.99 16 29 C -0.12 -3.72 10.04 22.31 0.22 -3.50 16 30 C 0.07 2.75 6.72 39.45 0.26 3.01 16 31 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.08 1.11 7.66 -2.39 -0.02 1.09 16 35 H 0.08 1.12 7.66 -2.39 -0.02 1.11 16 36 H 0.16 1.97 6.30 -2.91 -0.02 1.96 16 37 H 0.17 1.28 8.06 -2.91 -0.02 1.25 16 38 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 39 H 0.12 3.69 7.17 -2.91 -0.02 3.67 16 40 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 41 H 0.06 2.71 7.68 -2.39 -0.02 2.70 16 42 H 0.05 2.19 8.02 -2.39 -0.02 2.17 16 43 H 0.03 1.45 7.66 -2.39 -0.02 1.43 16 44 H 0.01 0.45 7.81 -2.39 -0.02 0.43 16 45 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 46 H 0.16 5.50 7.79 -2.91 -0.02 5.48 16 47 H 0.18 3.01 8.06 -2.91 -0.02 2.99 16 48 H 0.18 2.57 8.06 -2.91 -0.02 2.54 16 49 H 0.14 3.99 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -78.40 414.30 7.56 -70.84 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.96 Total: 19.53 kcal Atomic # 6 Polarization: -42.25 SS G_CDS: 5.58 Total: -36.67 kcal Atomic # 7 Polarization: -67.88 SS G_CDS: -0.69 Total: -68.57 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -0.32 Total: -31.90 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -78.40 7.56 -70.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006550072.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.106 kcal (2) G-P(sol) polarization free energy of solvation -78.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds