Wall clock time and date at job start Tue Mar 31 2020 06:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00101 * 2 1 4 4 H 1.48507 * 109.47530 * 270.00264 * 3 2 1 5 5 H 1.48499 * 109.47318 * 30.00140 * 3 2 1 6 6 H 1.48498 * 109.47258 * 150.00142 * 3 2 1 7 7 C 1.37878 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99949 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00196 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.47166 * 179.97438 * 9 7 2 11 11 C 1.29315 * 119.99596 * 113.52161 * 10 9 7 12 12 C 1.50701 * 119.99490 * 173.12793 * 11 10 9 13 13 C 1.50698 * 109.47493 * 0.02562 * 12 11 10 14 14 N 1.30113 * 124.94620 * 304.97456 * 13 12 11 15 15 C 1.35783 * 109.64302 * 180.02562 * 14 13 12 16 16 C 1.39738 * 133.60575 * 179.97438 * 15 14 13 17 17 C 1.36606 * 119.88952 * 179.72119 * 16 15 14 18 18 C 1.38779 * 120.66913 * 0.27594 * 17 16 15 19 19 C 1.37858 * 120.44597 * 359.97438 * 18 17 16 20 20 C 1.38826 * 119.69443 * 0.02562 * 19 18 17 21 21 N 1.36038 * 124.95421 * 125.59799 * 13 12 11 22 22 H 0.97008 * 126.34723 * 359.38726 * 21 13 12 23 23 C 1.47617 * 120.00461 * 353.13178 * 11 10 9 24 24 C 1.39631 * 120.14860 * 313.63988 * 23 11 10 25 25 C 1.37953 * 119.84521 * 179.76935 * 24 23 11 26 26 C 1.38363 * 120.14870 * 0.50222 * 25 24 23 27 27 N 1.48007 * 119.84333 * 179.76700 * 26 25 24 28 28 O 1.21807 * 119.99749 * 179.97438 * 27 26 25 29 29 O 1.21796 * 120.00316 * 359.97438 * 27 26 25 30 30 C 1.38357 * 120.30686 * 359.74979 * 26 25 24 31 31 C 1.37955 * 120.15432 * 359.97438 * 30 26 25 32 32 H 0.96996 * 119.99752 * 359.97438 * 1 2 3 33 33 H 1.08994 * 109.46719 * 59.99462 * 9 7 2 34 34 H 1.09003 * 109.46999 * 299.99656 * 9 7 2 35 35 H 1.08999 * 109.47135 * 240.00510 * 12 11 10 36 36 H 1.09003 * 109.47268 * 120.00340 * 12 11 10 37 37 H 1.08000 * 120.05835 * 0.02562 * 16 15 14 38 38 H 1.07993 * 119.66607 * 180.25901 * 17 16 15 39 39 H 1.07992 * 119.77883 * 179.97438 * 18 17 16 40 40 H 1.08008 * 120.14753 * 179.97438 * 19 18 17 41 41 H 1.07997 * 120.07794 * 0.02562 * 24 23 11 42 42 H 1.08000 * 119.92353 * 180.24869 * 25 24 23 43 43 H 1.08001 * 119.92381 * 179.97438 * 30 26 25 44 44 H 1.07991 * 120.07777 * 179.97438 * 31 30 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9999 -2.5753 -0.0010 11 6 4.6364 -3.0361 -1.0280 12 6 5.2728 -4.4009 -0.9699 13 6 5.0232 -5.0144 0.3837 14 7 5.3298 -4.4610 1.5207 15 6 4.9690 -5.2823 2.5401 16 6 5.0624 -5.1900 3.9313 17 6 4.5927 -6.2064 4.7140 18 6 4.0266 -7.3369 4.1418 19 6 3.9287 -7.4518 2.7715 20 6 4.4006 -6.4290 1.9601 21 7 4.4557 -6.2326 0.5947 22 1 4.1383 -6.8449 -0.0875 23 6 4.7397 -2.2253 -2.2572 24 6 3.6093 -1.5904 -2.7756 25 6 3.7139 -0.8302 -3.9221 26 6 4.9333 -0.7048 -4.5638 27 7 5.0368 0.1082 -5.7963 28 8 6.1090 0.2210 -6.3632 29 8 4.0500 0.6645 -6.2436 30 6 6.0564 -1.3354 -4.0585 31 6 5.9672 -2.0940 -2.9097 32 1 -0.4849 0.8400 0.0004 33 1 3.8752 -0.6804 0.8888 34 1 3.8746 -0.6801 -0.8912 35 1 6.3462 -4.3086 -1.1350 36 1 4.8398 -5.0369 -1.7420 37 1 5.5006 -4.3145 4.3871 38 1 4.6629 -6.1294 5.7889 39 1 3.6602 -8.1319 4.7742 40 1 3.4876 -8.3340 2.3313 41 1 2.6561 -1.6907 -2.2779 42 1 2.8412 -0.3353 -4.3219 43 1 7.0050 -1.2337 -4.5646 44 1 6.8445 -2.5861 -2.5166 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006567085.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:57 Heat of formation + Delta-G solvation = 120.911183 kcal Electronic energy + Delta-G solvation = -31187.195454 eV Core-core repulsion = 26880.959499 eV Total energy + Delta-G solvation = -4306.235956 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.132 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.07743 -42.00032 -39.74155 -37.45813 -36.47245 -36.41144 -33.32081 -32.99962 -31.82189 -31.44540 -31.02762 -29.90046 -28.69431 -27.13362 -26.45171 -23.27562 -22.97387 -22.36012 -22.13387 -21.98716 -20.90343 -19.24375 -18.83747 -18.55813 -17.69474 -17.43428 -17.19777 -17.07044 -16.22151 -15.58451 -15.22500 -15.20735 -14.76559 -14.41368 -14.24999 -14.14888 -13.95733 -13.83700 -13.41900 -13.21215 -12.96109 -12.73195 -12.50557 -12.26841 -11.94760 -11.70592 -11.57886 -11.47651 -11.44365 -11.19848 -11.10111 -11.06135 -10.84854 -10.65810 -10.51944 -9.95827 -9.73007 -9.54672 -9.31228 -8.94979 -8.82835 -8.53935 -8.29593 -7.99478 -6.34312 -4.36493 -0.15566 1.02853 1.05124 1.33637 1.51500 1.59509 2.51739 2.83034 2.98620 3.09960 3.19996 3.21992 3.41866 3.96948 4.12133 4.17225 4.35789 4.44887 4.53733 4.55458 4.78043 4.91395 4.95798 5.01706 5.03363 5.12451 5.14982 5.27074 5.37455 5.46047 5.51754 5.54869 5.71817 5.77407 5.80817 5.92048 6.08944 6.11725 6.34247 6.37777 6.43961 6.47478 6.55731 6.61762 6.63227 6.81368 6.95787 7.34152 7.39381 7.73968 8.03916 8.09940 8.43683 8.70517 9.23952 10.77237 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.009365 B = 0.003028 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2989.186130 B = 9244.830110 C =11460.868985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.082 3.918 3 Si 0.866 3.134 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.080 0.920 9 C 0.124 3.876 10 N -0.403 5.403 11 C 0.130 3.870 12 C 0.016 3.984 13 C 0.304 3.696 14 N -0.456 5.456 15 C 0.054 3.946 16 C -0.061 4.061 17 C -0.134 4.134 18 C -0.108 4.108 19 C -0.113 4.113 20 C 0.046 3.954 21 N -0.601 5.601 22 H 0.419 0.581 23 C -0.027 4.027 24 C -0.081 4.081 25 C -0.057 4.057 26 C -0.048 4.048 27 N 0.032 4.968 28 O -0.171 6.171 29 O -0.165 6.165 30 C -0.064 4.064 31 C -0.106 4.106 32 H 0.269 0.731 33 H 0.053 0.947 34 H 0.008 0.992 35 H 0.112 0.888 36 H 0.098 0.902 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.119 0.881 41 H 0.174 0.826 42 H 0.154 0.846 43 H 0.151 0.849 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.051 -13.968 -1.318 18.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.123 4.123 3 Si 0.692 3.308 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.098 0.902 9 C -0.003 4.003 10 N -0.109 5.109 11 C -0.065 4.065 12 C -0.023 4.023 13 C 0.037 3.963 14 N -0.174 5.174 15 C -0.065 4.065 16 C -0.081 4.081 17 C -0.154 4.154 18 C -0.128 4.128 19 C -0.134 4.134 20 C -0.064 4.064 21 N -0.212 5.212 22 H 0.257 0.743 23 C -0.030 4.030 24 C -0.101 4.101 25 C -0.077 4.077 26 C -0.131 4.131 27 N 0.550 4.450 28 O -0.385 6.385 29 O -0.380 6.380 30 C -0.083 4.083 31 C -0.127 4.127 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.025 0.975 35 H 0.130 0.870 36 H 0.117 0.883 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.137 0.863 41 H 0.192 0.808 42 H 0.171 0.829 43 H 0.168 0.832 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 11.866 -13.550 0.409 18.016 hybrid contribution -0.311 0.764 -1.433 1.654 sum 11.555 -12.786 -1.024 17.265 Atomic orbital electron populations 1.69855 1.06101 1.27497 1.48675 1.24839 0.94712 0.98748 0.94012 0.86985 0.80694 0.84032 0.79116 1.19688 1.20470 1.18912 1.20720 0.87164 0.95051 1.52949 0.90223 1.20870 0.98010 0.84195 0.97227 1.71988 0.99447 1.15541 1.23904 1.22430 0.99510 0.95037 0.89489 1.18957 1.02100 0.91876 0.89409 1.22904 0.94882 0.82334 0.96200 1.70435 1.23346 1.27554 0.96104 1.19130 1.01953 0.91254 0.94118 1.20045 0.99168 0.99002 0.89861 1.20589 1.00992 0.94135 0.99702 1.20807 1.00133 0.98309 0.93525 1.19897 1.03298 0.97322 0.92913 1.18840 1.04857 0.99084 0.83618 1.43016 1.53597 1.18459 1.06148 0.74300 1.20266 0.93356 0.95057 0.94330 1.22088 1.01275 0.93630 0.93114 1.21072 0.96116 0.96340 0.94124 1.21242 0.97983 1.03833 0.90092 1.43691 1.00155 0.99351 1.01846 1.94493 1.16609 1.66966 1.60476 1.94544 1.28221 1.46895 1.68390 1.20877 0.97480 0.94257 0.95710 1.21305 0.97928 0.99299 0.94133 0.92049 0.92902 0.97453 0.86971 0.88341 0.85530 0.85683 0.85651 0.86336 0.80835 0.82871 0.83163 0.83410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.51 13.96 55.43 0.77 -24.74 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.87 20.48 27.47 -169.99 -4.67 15.81 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 7 C -0.52 -13.78 8.40 -34.44 -0.29 -14.07 16 8 H 0.08 2.35 8.06 -52.48 -0.42 1.93 16 9 C 0.12 2.85 4.33 -5.19 -0.02 2.82 16 10 N -0.40 -8.08 8.74 -56.04 -0.49 -8.57 16 11 C 0.13 1.97 6.52 -79.82 -0.52 1.45 16 12 C 0.02 0.17 5.97 -29.04 -0.17 0.00 16 13 C 0.30 4.24 6.86 -154.82 -1.06 3.17 16 14 N -0.46 -7.82 10.43 -8.23 -0.09 -7.91 16 15 C 0.05 0.88 7.23 -84.70 -0.61 0.27 16 16 C -0.06 -0.87 10.05 -39.61 -0.40 -1.26 16 17 C -0.13 -1.53 9.96 -39.97 -0.40 -1.92 16 18 C -0.11 -1.14 10.03 -39.52 -0.40 -1.54 16 19 C -0.11 -1.29 10.07 -39.50 -0.40 -1.69 16 20 C 0.05 0.64 7.31 -83.99 -0.61 0.02 16 21 N -0.60 -7.16 6.23 -8.00 -0.05 -7.21 16 22 H 0.42 3.37 8.96 -40.82 -0.37 3.01 16 23 C -0.03 -0.38 4.69 -105.03 -0.49 -0.87 16 24 C -0.08 -1.32 7.45 -39.17 -0.29 -1.61 16 25 C -0.06 -0.88 9.54 -39.64 -0.38 -1.26 16 26 C -0.05 -0.70 6.86 -79.86 -0.55 -1.25 16 27 N 0.03 0.51 4.45 34.00 0.15 0.67 16 28 O -0.17 -2.70 18.43 -29.46 -0.54 -3.25 16 29 O -0.17 -2.83 18.43 -29.46 -0.54 -3.37 16 30 C -0.06 -0.75 9.54 -39.64 -0.38 -1.13 16 31 C -0.11 -1.17 9.52 -39.16 -0.37 -1.54 16 32 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.05 1.30 7.20 -51.93 -0.37 0.93 16 34 H 0.01 0.17 4.32 -51.93 -0.22 -0.05 16 35 H 0.11 0.88 7.65 -51.93 -0.40 0.48 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.13 1.67 8.06 -52.49 -0.42 1.24 16 38 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 39 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 40 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 41 H 0.17 3.32 5.89 -52.49 -0.31 3.01 16 42 H 0.15 2.31 7.60 -52.49 -0.40 1.91 16 43 H 0.15 1.44 7.60 -52.49 -0.40 1.04 16 44 H 0.15 1.11 7.56 -52.49 -0.40 0.71 16 LS Contribution 382.21 15.07 5.76 5.76 Total: -1.00 -33.97 382.21 -11.71 -45.67 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -4.57 Total: 5.44 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -7.44 Total: -18.31 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 0.30 Total: -47.76 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -1.09 Total: -6.62 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.67 Total: 15.81 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.97 -11.71 -45.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006567085.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.585 kcal (2) G-P(sol) polarization free energy of solvation -33.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds