Wall clock time and date at job start Tue Mar 31 2020 05:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35952 * 117.00360 * 2 1 4 4 C 1.38725 * 119.91090 * 0.02562 * 3 2 1 5 5 C 1.37915 * 120.15659 * 179.74391 * 4 3 2 6 6 C 1.39717 * 119.98814 * 0.51191 * 5 4 3 7 7 C 1.47426 * 120.08518 * 179.74265 * 6 5 4 8 8 C 1.50695 * 119.99989 * 36.40099 * 7 6 5 9 9 N 1.29828 * 120.00109 * 216.40687 * 7 6 5 10 10 N 1.40099 * 119.99890 * 8.28099 * 9 7 6 11 11 C 1.38240 * 119.99990 * 185.93576 * 10 9 7 12 12 N 1.31590 * 125.99824 * 0.02869 * 11 10 9 13 13 C 1.33799 * 109.67154 * 179.97438 * 12 11 10 14 14 S 1.76198 * 125.53071 * 180.02562 * 13 12 11 15 15 C 1.76201 * 100.00541 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99300 * 0.02562 * 15 14 13 17 17 C 1.38663 * 120.00486 * 179.97438 * 15 14 13 18 18 N 1.31663 * 119.99957 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00228 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46958 * 90.00215 * 19 17 15 21 21 H 1.48501 * 109.47316 * 210.00212 * 19 17 15 22 22 H 1.48494 * 109.47175 * 330.00070 * 19 17 15 23 23 N 1.31317 * 108.94454 * 0.02562 * 13 12 11 24 24 N 1.35123 * 126.00106 * 179.72323 * 11 10 9 25 25 H 0.97003 * 126.77292 * 359.97438 * 24 11 10 26 26 C 1.39726 * 119.83151 * 359.46894 * 6 5 4 27 27 C 1.38243 * 119.84095 * 0.27759 * 26 6 5 28 28 O 1.35991 * 119.99562 * 179.97438 * 27 26 6 29 29 C 1.42898 * 117.00126 * 359.97438 * 28 27 26 30 30 H 1.08997 * 109.46922 * 300.00125 * 1 2 3 31 31 H 1.08996 * 109.46920 * 60.00005 * 1 2 3 32 32 H 1.08999 * 109.46800 * 180.02562 * 1 2 3 33 33 H 1.07996 * 119.92253 * 0.02562 * 4 3 2 34 34 H 1.08002 * 120.00591 * 180.25771 * 5 4 3 35 35 H 1.09001 * 109.47572 * 270.00224 * 8 7 6 36 36 H 1.08996 * 109.47203 * 29.99982 * 8 7 6 37 37 H 1.09001 * 109.47402 * 150.00213 * 8 7 6 38 38 H 0.97000 * 119.99969 * 6.22043 * 10 9 7 39 39 H 0.96992 * 120.00138 * 180.02562 * 18 17 15 40 40 H 1.07997 * 120.07845 * 180.24905 * 26 6 5 41 41 H 1.09001 * 109.47631 * 179.97438 * 29 28 27 42 42 H 1.08996 * 109.47456 * 300.01016 * 29 28 27 43 43 H 1.09007 * 109.46810 * 60.00568 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2890 2.3736 0.0005 5 6 1.9099 3.6051 0.0059 6 6 3.3049 3.6838 -0.0001 7 6 3.9708 4.9991 -0.0001 8 6 3.3774 6.1441 0.7795 9 7 5.0684 5.1710 -0.6719 10 7 5.5273 4.1658 -1.5331 11 6 6.7557 4.2950 -2.1539 12 7 7.5867 5.3067 -2.0211 13 6 8.6771 5.0946 -2.7669 14 16 10.0558 6.1840 -2.8979 15 6 11.0632 5.2696 -4.0177 16 1 10.7228 4.3167 -4.3954 17 6 12.2923 5.7738 -4.4147 18 7 12.7070 6.9356 -3.9546 19 14 13.3599 4.8048 -5.6024 20 1 13.0289 5.1946 -6.9965 21 1 14.7908 5.0969 -5.3332 22 1 13.1088 3.3524 -5.4216 23 7 8.5532 3.9429 -3.3855 24 7 7.3164 3.4022 -2.9990 25 1 6.9383 2.5554 -3.2837 26 6 4.0672 2.5129 -0.0002 27 6 3.4375 1.2822 -0.0002 28 8 4.1764 0.1405 -0.0008 29 6 5.5978 0.2875 -0.0020 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 0.2107 2.3140 0.0014 34 1 1.3180 4.5084 0.0105 35 1 2.6866 6.6975 0.1433 36 1 2.8417 5.7552 1.6453 37 1 4.1747 6.8081 1.1136 38 1 4.9813 3.3810 -1.6970 39 1 13.5666 7.2885 -4.2326 40 1 5.1457 2.5691 -0.0007 41 1 6.0651 -0.6972 -0.0019 42 1 5.9056 0.8362 -0.8921 43 1 5.9070 0.8360 0.8879 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006854970.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:46 Heat of formation + Delta-G solvation = 97.207972 kcal Electronic energy + Delta-G solvation = -29019.021918 eV Core-core repulsion = 24809.087633 eV Total energy + Delta-G solvation = -4209.934285 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.115 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.24806 -40.98973 -39.00707 -38.59429 -36.45762 -33.81442 -32.55561 -31.77103 -30.99343 -30.41778 -29.79158 -27.72195 -27.65812 -27.42638 -25.51338 -23.39862 -22.69498 -22.30247 -21.26321 -20.11933 -18.84743 -18.53906 -17.80057 -17.50789 -17.15770 -16.56258 -16.39512 -15.71638 -15.60882 -15.36080 -15.16674 -14.89297 -14.84740 -14.65239 -14.14550 -14.01577 -13.51094 -13.14124 -12.99698 -12.90278 -12.64054 -12.59370 -12.33775 -11.93417 -11.69042 -11.65092 -11.50170 -11.42816 -11.09554 -11.02037 -10.89848 -10.42479 -10.13074 -10.09790 -9.73043 -9.35564 -9.26315 -9.06747 -8.56360 -8.36616 -7.77574 -6.63922 -6.34027 -4.06204 0.46318 0.79934 1.83206 2.02270 2.53457 2.75178 2.80284 2.90930 3.19787 3.23596 3.27791 3.35288 3.74368 3.78064 4.04448 4.16563 4.23960 4.42265 4.53176 4.60068 4.68214 4.70220 4.78528 4.80211 4.85719 5.02399 5.06657 5.07917 5.13613 5.17513 5.21783 5.37954 5.52247 5.54961 5.67082 5.84232 5.91519 6.05145 6.19657 6.25511 6.54732 6.69769 7.06203 7.18063 7.64741 7.76721 7.91593 8.42599 8.87705 9.16351 10.73787 Molecular weight = 363.12amu Principal moments of inertia in cm(-1) A = 0.016983 B = 0.002078 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.300218 B =13468.908766 C =14699.678614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.305 6.305 3 C 0.108 3.892 4 C -0.171 4.171 5 C -0.085 4.085 6 C -0.086 4.086 7 C 0.107 3.893 8 C -0.086 4.086 9 N -0.178 5.178 10 N -0.555 5.555 11 C 0.525 3.475 12 N -0.529 5.529 13 C 0.219 3.781 14 S 0.160 5.840 15 C -0.543 4.543 16 H 0.096 0.904 17 C 0.076 3.924 18 N -0.874 5.874 19 Si 0.928 3.072 20 H -0.275 1.275 21 H -0.282 1.282 22 H -0.269 1.269 23 N -0.323 5.323 24 N -0.525 5.525 25 H 0.424 0.576 26 C -0.179 4.179 27 C 0.107 3.893 28 O -0.303 6.303 29 C 0.024 3.976 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.101 0.899 33 H 0.141 0.859 34 H 0.138 0.862 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.397 0.603 39 H 0.273 0.727 40 H 0.142 0.858 41 H 0.107 0.893 42 H 0.052 0.948 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.431 -11.181 11.002 31.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.218 6.218 3 C 0.062 3.938 4 C -0.189 4.189 5 C -0.105 4.105 6 C -0.089 4.089 7 C -0.086 4.086 8 C -0.145 4.145 9 N 0.016 4.984 10 N -0.291 5.291 11 C 0.157 3.843 12 N -0.268 5.268 13 C -0.167 4.167 14 S 0.389 5.611 15 C -0.692 4.692 16 H 0.114 0.886 17 C -0.134 4.134 18 N -0.510 5.510 19 Si 0.754 3.246 20 H -0.201 1.201 21 H -0.207 1.207 22 H -0.194 1.194 23 N -0.159 5.159 24 N -0.249 5.249 25 H 0.267 0.733 26 C -0.199 4.199 27 C 0.061 3.939 28 O -0.216 6.216 29 C -0.071 4.071 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.120 0.880 33 H 0.158 0.842 34 H 0.156 0.844 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.240 0.760 39 H 0.082 0.918 40 H 0.159 0.841 41 H 0.125 0.875 42 H 0.070 0.930 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -25.611 -9.631 11.007 29.493 hybrid contribution -0.910 -3.207 -1.391 3.612 sum -26.521 -12.838 9.616 30.994 Atomic orbital electron populations 1.23120 0.78267 1.04265 1.01378 1.86189 1.21256 1.25755 1.88577 1.18400 0.89042 0.85455 1.00916 1.21072 1.00226 0.91239 1.06407 1.21030 0.93023 0.97506 0.98945 1.19151 0.93780 0.92394 1.03589 1.23712 0.92356 0.93925 0.98566 1.20554 1.01171 0.94174 0.98611 1.75161 1.10328 1.12016 1.00894 1.44119 1.16310 1.22590 1.46094 1.19851 0.86640 0.88251 0.89608 1.70921 1.03120 1.23808 1.28901 1.27373 0.99632 0.96373 0.93338 1.83779 1.03055 1.19069 1.55188 1.23202 1.05000 1.09833 1.31184 0.88595 1.25028 0.96731 0.95235 0.96372 1.69969 1.21110 1.17421 1.42460 0.86002 0.78455 0.80015 0.80125 1.20100 1.20718 1.19397 1.78680 0.96289 1.13523 1.27429 1.47917 1.17199 1.19914 1.39840 0.73325 1.21397 1.00760 0.90771 1.07003 1.18088 0.88408 0.85924 1.01486 1.86194 1.19006 1.27676 1.88740 1.23143 0.78060 1.04460 1.01444 0.92489 0.92508 0.88023 0.84156 0.84448 0.89876 0.90244 0.89555 0.75956 0.91761 0.84079 0.87505 0.92951 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.30 -2.82 10.27 -34.28 -0.35 -3.17 16 3 C 0.11 1.02 6.70 -39.01 -0.26 0.76 16 4 C -0.17 -1.19 9.02 -39.52 -0.36 -1.55 16 5 C -0.08 -0.60 9.45 -39.15 -0.37 -0.97 16 6 C -0.09 -0.81 5.23 -105.05 -0.55 -1.35 16 7 C 0.11 1.13 6.81 -79.70 -0.54 0.59 16 8 C -0.09 -0.61 9.56 36.00 0.34 -0.27 16 9 N -0.18 -2.59 11.31 35.11 0.40 -2.19 16 10 N -0.56 -8.21 5.11 30.05 0.15 -8.06 16 11 C 0.53 9.95 9.12 -320.73 -2.92 7.02 16 12 N -0.53 -12.28 11.12 -14.13 -0.16 -12.44 16 13 C 0.22 5.54 8.20 -90.81 -0.74 4.80 16 14 S 0.16 4.38 21.89 -107.50 -2.35 2.03 16 15 C -0.54 -15.68 9.36 30.89 0.29 -15.39 16 16 H 0.10 2.79 6.87 -52.48 -0.36 2.43 16 17 C 0.08 2.12 5.49 -17.47 -0.10 2.03 16 18 N -0.87 -25.31 13.22 55.48 0.73 -24.58 16 19 Si 0.93 21.65 29.55 -169.99 -5.02 16.63 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 N -0.32 -7.68 11.51 30.16 0.35 -7.33 16 24 N -0.52 -9.58 7.47 30.04 0.22 -9.36 16 25 H 0.42 5.78 8.96 -182.36 -1.63 4.14 16 26 C -0.18 -1.82 6.56 -39.02 -0.26 -2.08 16 27 C 0.11 1.12 6.69 -39.18 -0.26 0.86 16 28 O -0.30 -3.30 10.27 -34.41 -0.35 -3.66 16 29 C 0.02 0.20 9.81 101.05 0.99 1.19 16 30 H 0.06 0.18 7.65 -51.93 -0.40 -0.21 16 31 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 32 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.14 0.59 6.27 -52.49 -0.33 0.26 16 34 H 0.14 0.63 7.73 -52.49 -0.41 0.22 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.40 8.09 -51.93 -0.42 -0.02 16 37 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.40 4.79 5.76 -182.60 -1.05 3.74 16 39 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.14 1.54 4.93 -52.49 -0.26 1.28 16 41 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 43 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 LS Contribution 384.96 15.07 5.80 5.80 Total: -1.00 -36.89 384.96 -11.20 -48.10 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -6.88 Total: 1.49 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -3.75 Total: -3.26 kcal Atomic # 7 Polarization: -65.65 SS G_CDS: 1.70 Total: -63.95 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.71 Total: -6.83 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 4.38 SS G_CDS: -2.35 Total: 2.03 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.89 -11.20 -48.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006854970.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.305 kcal (2) G-P(sol) polarization free energy of solvation -36.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds