Wall clock time and date at job start Tue Mar 31 2020 05:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35863 * 117.00118 * 2 1 4 4 C 1.38967 * 119.86310 * 359.97438 * 3 2 1 5 5 C 1.37806 * 120.21477 * 180.28151 * 4 3 2 6 6 C 1.39705 * 119.94948 * 359.51052 * 5 4 3 7 7 C 1.47343 * 120.13380 * 180.23220 * 6 5 4 8 8 C 1.50700 * 120.00259 * 114.32416 * 7 6 5 9 9 N 1.29842 * 119.99776 * 294.33018 * 7 6 5 10 10 N 1.40104 * 120.00179 * 2.75317 * 9 7 6 11 11 C 1.38201 * 119.99989 * 175.16567 * 10 9 7 12 12 N 1.31594 * 126.00327 * 5.06347 * 11 10 9 13 13 C 1.33807 * 109.67358 * 179.97438 * 12 11 10 14 14 S 1.76198 * 125.53029 * 180.02562 * 13 12 11 15 15 C 1.76195 * 100.00145 * 179.97438 * 14 13 12 16 16 H 1.08009 * 120.00124 * 0.02562 * 15 14 13 17 17 C 1.38678 * 120.00478 * 179.97438 * 15 14 13 18 18 N 1.31659 * 119.99237 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00416 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47216 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47171 * 120.00237 * 19 17 15 22 22 H 1.48495 * 109.47238 * 240.00406 * 19 17 15 23 23 N 1.31315 * 108.94650 * 0.02562 * 13 12 11 24 24 N 1.35138 * 126.00106 * 184.75762 * 11 10 9 25 25 H 0.97003 * 126.77742 * 359.97438 * 24 11 10 26 26 C 1.40215 * 119.73701 * 0.48199 * 6 5 4 27 27 O 1.35819 * 120.10710 * 179.77041 * 26 6 5 28 28 C 1.42898 * 116.99860 * 174.25359 * 27 26 6 29 29 C 1.38383 * 119.77982 * 359.75419 * 26 6 5 30 30 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47355 * 300.00344 * 1 2 3 32 32 H 1.09000 * 109.46520 * 60.00540 * 1 2 3 33 33 H 1.07998 * 119.89156 * 359.97438 * 4 3 2 34 34 H 1.07996 * 120.02213 * 179.72396 * 5 4 3 35 35 H 1.09000 * 109.46873 * 89.99694 * 8 7 6 36 36 H 1.08991 * 109.47150 * 210.00269 * 8 7 6 37 37 H 1.09000 * 109.47157 * 330.00440 * 8 7 6 38 38 H 0.97000 * 119.99916 * 355.15677 * 10 9 7 39 39 H 0.97003 * 119.99711 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.47389 * 64.79123 * 28 27 26 41 41 H 1.08997 * 109.47342 * 184.79710 * 28 27 26 42 42 H 1.09009 * 109.46963 * 304.79351 * 28 27 26 43 43 H 1.07997 * 119.97245 * 179.97438 * 29 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2105 0.0000 4 6 1.2862 2.3742 -0.0005 5 6 1.9043 3.6059 -0.0064 6 6 3.2990 3.6863 -0.0015 7 6 3.9641 5.0011 -0.0025 8 6 4.7795 5.4341 1.1885 9 7 3.8475 5.7868 -1.0297 10 7 3.0426 5.4093 -2.1126 11 6 2.8383 6.2868 -3.1606 12 7 3.4122 7.4616 -3.3089 13 6 2.9795 8.0351 -4.4378 14 16 3.4789 9.6135 -5.0411 15 6 2.5256 9.6910 -6.5208 16 1 1.8746 8.8714 -6.7875 17 6 2.6101 10.8048 -7.3427 18 7 3.4032 11.8041 -7.0173 19 14 1.5989 10.8874 -8.9110 20 1 0.7943 9.6467 -9.0471 21 1 0.6915 12.0615 -8.8538 22 1 2.5066 11.0197 -10.0788 23 7 2.1224 7.2307 -5.0232 24 7 2.0184 6.0865 -4.2159 25 1 1.4657 5.3068 -4.3823 26 6 4.0635 2.5109 -0.0008 27 8 5.4199 2.5804 -0.0007 28 6 6.1325 1.3484 0.1274 29 6 3.4313 1.2799 0.0001 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 0.2080 2.3131 -0.0014 34 1 1.3109 4.5082 -0.0113 35 1 5.8133 5.1146 1.0566 36 1 4.7433 6.5197 1.2784 37 1 4.3718 4.9809 2.0921 38 1 2.6289 4.5321 -2.1268 39 1 3.4621 12.5834 -7.5919 40 1 5.9392 0.7243 -0.7451 41 1 7.2009 1.5524 0.1988 42 1 5.8010 0.8287 1.0265 43 1 4.0171 0.3726 0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006854973.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:50 Heat of formation + Delta-G solvation = 89.045594 kcal Electronic energy + Delta-G solvation = -28784.779658 eV Core-core repulsion = 24574.491426 eV Total energy + Delta-G solvation = -4210.288232 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.115 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.14200 -40.93674 -39.51172 -38.11852 -36.34377 -33.75565 -32.51649 -31.68088 -31.16006 -30.29210 -29.53310 -27.80038 -27.66254 -27.41619 -25.46977 -23.41133 -22.58534 -22.25820 -21.16517 -19.90175 -19.11113 -18.40724 -17.51616 -17.32978 -17.30079 -16.73348 -16.45048 -16.00006 -15.52213 -15.37384 -15.09152 -14.81391 -14.76457 -14.60896 -14.06203 -13.86565 -13.45078 -13.18954 -12.94372 -12.86168 -12.82370 -12.46538 -12.24778 -12.12458 -11.95274 -11.57777 -11.37805 -11.14180 -11.07988 -10.96357 -10.85118 -10.21956 -10.05913 -10.04497 -9.58743 -9.26951 -9.15140 -9.03991 -8.53011 -8.50101 -7.76987 -6.58536 -6.30452 -4.01830 0.67500 0.84317 1.84179 2.13676 2.57059 2.63338 2.84741 2.97352 3.13644 3.24489 3.30372 3.39890 3.83208 3.87188 4.19312 4.22178 4.23863 4.51188 4.53936 4.57088 4.62746 4.70372 4.73294 4.79382 4.92513 4.98705 5.08536 5.10555 5.11442 5.22742 5.38857 5.50137 5.60020 5.65199 5.75698 5.82887 5.96628 6.05172 6.29911 6.37247 6.69507 6.80037 6.89081 7.27055 7.68909 7.88219 8.06279 8.47172 8.97346 9.20089 10.77509 Molecular weight = 363.12amu Principal moments of inertia in cm(-1) A = 0.015199 B = 0.002014 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.836327 B =13898.279637 C =14993.003480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.315 6.315 3 C 0.177 3.823 4 C -0.243 4.243 5 C -0.029 4.029 6 C -0.166 4.166 7 C 0.127 3.873 8 C -0.082 4.082 9 N -0.181 5.181 10 N -0.553 5.553 11 C 0.531 3.469 12 N -0.532 5.532 13 C 0.220 3.780 14 S 0.157 5.843 15 C -0.541 4.541 16 H 0.096 0.904 17 C 0.075 3.925 18 N -0.875 5.875 19 Si 0.927 3.073 20 H -0.269 1.269 21 H -0.279 1.279 22 H -0.279 1.279 23 N -0.325 5.325 24 N -0.525 5.525 25 H 0.424 0.576 26 C 0.196 3.804 27 O -0.299 6.299 28 C 0.023 3.977 29 C -0.244 4.244 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.393 0.607 39 H 0.272 0.728 40 H 0.057 0.943 41 H 0.105 0.895 42 H 0.059 0.941 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.772 -26.393 20.018 33.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.227 6.227 3 C 0.130 3.870 4 C -0.261 4.261 5 C -0.048 4.048 6 C -0.170 4.170 7 C -0.068 4.068 8 C -0.141 4.141 9 N 0.014 4.986 10 N -0.286 5.286 11 C 0.162 3.838 12 N -0.270 5.270 13 C -0.167 4.167 14 S 0.386 5.614 15 C -0.690 4.690 16 H 0.114 0.886 17 C -0.134 4.134 18 N -0.510 5.510 19 Si 0.753 3.247 20 H -0.193 1.193 21 H -0.205 1.205 22 H -0.205 1.205 23 N -0.162 5.162 24 N -0.249 5.249 25 H 0.267 0.733 26 C 0.147 3.853 27 O -0.211 6.211 28 C -0.072 4.072 29 C -0.264 4.264 30 H 0.121 0.879 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.234 0.766 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.123 0.877 42 H 0.078 0.922 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.519 -24.062 19.459 30.950 hybrid contribution -2.634 -3.118 -1.213 4.258 sum -3.153 -27.180 18.246 32.888 Atomic orbital electron populations 1.23143 0.77691 1.04308 1.01826 1.86064 1.21958 1.26789 1.87934 1.18798 0.91481 0.84283 0.92427 1.21092 1.00443 0.91733 1.12877 1.20976 0.92200 0.97795 0.93841 1.18650 0.92655 0.91938 1.13746 1.23437 0.98695 0.89950 0.94733 1.20496 0.98869 1.02728 0.91973 1.75170 1.06364 1.23796 0.93312 1.43712 1.52817 1.15148 1.16925 1.19796 0.90099 0.89916 0.83963 1.70927 1.30072 1.05579 1.20413 1.27342 0.94476 1.03290 0.91558 1.83765 1.52533 1.01243 1.23824 1.23251 1.30298 1.07885 1.07598 0.88563 1.25031 0.95492 0.94291 0.98613 1.69985 1.36048 1.06921 1.38069 0.85961 0.79437 0.78383 0.80874 1.19279 1.20493 1.20491 1.78659 1.27062 0.94392 1.16066 1.47898 1.39067 1.19494 1.18473 0.73325 1.18662 0.82802 0.91883 0.91905 1.86170 1.14679 1.33393 1.86880 1.23178 0.97204 0.85340 1.01439 1.20331 0.92669 0.97590 1.15794 0.87947 0.92230 0.92230 0.84739 0.84607 0.89870 0.89964 0.90610 0.76586 0.91862 0.92413 0.87699 0.92195 0.84159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.10 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.40 10.49 -19.31 -0.20 -2.60 16 3 C 0.18 1.46 6.69 -39.13 -0.26 1.20 16 4 C -0.24 -1.84 9.01 -39.47 -0.36 -2.19 16 5 C -0.03 -0.25 8.33 -39.19 -0.33 -0.58 16 6 C -0.17 -1.67 4.42 -104.90 -0.46 -2.14 16 7 C 0.13 1.49 6.12 -79.73 -0.49 1.01 16 8 C -0.08 -0.74 10.06 36.01 0.36 -0.38 16 9 N -0.18 -2.82 11.33 35.09 0.40 -2.42 16 10 N -0.55 -8.61 6.13 30.05 0.18 -8.42 16 11 C 0.53 10.50 9.11 -320.76 -2.92 7.57 16 12 N -0.53 -12.77 11.12 -14.13 -0.16 -12.92 16 13 C 0.22 5.71 8.20 -90.80 -0.74 4.97 16 14 S 0.16 4.39 21.89 -107.50 -2.35 2.04 16 15 C -0.54 -15.86 9.36 30.89 0.29 -15.57 16 16 H 0.10 2.85 6.87 -52.48 -0.36 2.49 16 17 C 0.07 2.13 5.49 -17.46 -0.10 2.03 16 18 N -0.87 -25.63 13.22 55.48 0.73 -24.90 16 19 Si 0.93 21.88 29.55 -169.99 -5.02 16.86 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 N -0.33 -7.97 11.51 30.16 0.35 -7.62 16 24 N -0.53 -9.98 7.47 30.04 0.22 -9.75 16 25 H 0.42 6.03 8.96 -182.35 -1.63 4.39 16 26 C 0.20 1.84 6.68 -38.79 -0.26 1.58 16 27 O -0.30 -2.72 9.81 -19.17 -0.19 -2.91 16 28 C 0.02 0.12 9.82 101.05 0.99 1.11 16 29 C -0.24 -2.04 8.96 -39.35 -0.35 -2.39 16 30 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.19 7.65 -51.93 -0.40 -0.20 16 32 H 0.06 0.21 7.65 -51.93 -0.40 -0.18 16 33 H 0.13 0.74 6.27 -52.49 -0.33 0.41 16 34 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.53 8.11 -51.93 -0.42 0.11 16 38 H 0.39 4.94 6.51 -182.59 -1.19 3.75 16 39 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.06 0.27 7.69 -51.93 -0.40 -0.13 16 41 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.23 7.64 -51.92 -0.40 -0.16 16 43 H 0.14 0.95 6.32 -52.49 -0.33 0.62 16 LS Contribution 388.54 15.07 5.86 5.86 Total: -1.00 -37.26 388.54 -10.93 -48.18 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -7.11 Total: 1.30 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -3.64 Total: -2.69 kcal Atomic # 7 Polarization: -67.77 SS G_CDS: 1.73 Total: -66.04 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.39 Total: -5.51 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 4.39 SS G_CDS: -2.35 Total: 2.04 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.26 -10.93 -48.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006854973.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.226 kcal (2) G-P(sol) polarization free energy of solvation -37.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds