Wall clock time and date at job start Tue Mar 31 2020 06:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99948 * 2 1 4 4 H 1.48493 * 109.47486 * 270.00431 * 3 2 1 5 5 H 1.48504 * 109.47001 * 30.00276 * 3 2 1 6 6 H 1.48502 * 109.47145 * 149.99833 * 3 2 1 7 7 C 1.37874 * 119.99804 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99943 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99670 * 180.02562 * 7 2 1 10 10 S 1.81398 * 109.47136 * 179.97438 * 9 7 2 11 11 C 1.76199 * 103.00071 * 179.97438 * 10 9 7 12 12 N 1.31092 * 126.02216 * 359.69140 * 11 10 9 13 13 N 1.40078 * 108.05010 * 179.85318 * 12 11 10 14 14 C 1.31031 * 108.07405 * 0.41575 * 13 12 11 15 15 N 1.38907 * 126.00108 * 179.73150 * 14 13 12 16 16 C 1.48534 * 110.99930 * 242.62391 * 15 14 13 17 17 C 1.54938 * 103.22589 * 159.72436 * 16 15 14 18 18 C 1.54596 * 102.92007 * 322.58889 * 17 16 15 19 19 C 1.47891 * 111.00345 * 0.02640 * 15 14 13 20 20 N 1.36831 * 107.99312 * 359.75238 * 14 13 12 21 21 C 1.40305 * 126.03846 * 179.97438 * 20 14 13 22 22 C 1.38799 * 120.06798 * 270.02383 * 21 20 14 23 23 C 1.38130 * 119.94633 * 179.97438 * 22 21 20 24 24 C 1.38294 * 120.08630 * 0.03194 * 23 22 21 25 25 C 1.38239 * 120.13905 * 359.97302 * 24 23 22 26 26 C 1.38249 * 120.05310 * 359.72024 * 25 24 23 27 27 Cl 1.73601 * 120.04952 * 180.27634 * 26 25 24 28 28 H 0.97002 * 120.00018 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.46894 * 59.99918 * 9 7 2 30 30 H 1.09000 * 109.47022 * 299.99473 * 9 7 2 31 31 H 1.08996 * 110.67114 * 278.16157 * 16 15 14 32 32 H 1.09000 * 110.66329 * 41.29004 * 16 15 14 33 33 H 1.08997 * 110.72610 * 204.23032 * 17 16 15 34 34 H 1.09000 * 110.72374 * 80.94445 * 17 16 15 35 35 H 1.09001 * 110.31117 * 263.03964 * 18 17 16 36 36 H 1.09007 * 110.30945 * 140.87432 * 18 17 16 37 37 H 1.09006 * 109.91818 * 333.50850 * 19 15 14 38 38 H 1.09005 * 109.91605 * 94.80240 * 19 15 14 39 39 H 1.08001 * 120.02580 * 359.97438 * 22 21 20 40 40 H 1.07995 * 119.95495 * 179.97438 * 23 22 21 41 41 H 1.07997 * 119.92500 * 179.97438 * 24 23 22 42 42 H 1.08005 * 119.97752 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 16 4.1163 -2.9042 -0.0001 11 6 5.8670 -2.7056 -0.0001 12 7 6.5136 -1.5652 -0.0058 13 7 7.8862 -1.8445 -0.0001 14 6 8.0363 -3.1462 -0.0002 15 7 9.2461 -3.8286 -0.0007 16 6 9.3960 -4.6455 -1.2322 17 6 10.9248 -4.8820 -1.3168 18 6 11.5103 -3.5375 -0.8276 19 6 10.3861 -2.8865 -0.0005 20 7 6.7918 -3.7151 -0.0002 21 6 6.5128 -5.0901 -0.0008 22 6 6.3747 -5.7712 -1.2023 23 6 6.1006 -7.1250 -1.2000 24 6 5.9629 -7.8024 -0.0022 25 6 6.0996 -7.1276 1.1966 26 6 6.3803 -5.7739 1.2009 27 17 6.5590 -4.9280 2.7064 28 1 -0.4850 0.8401 0.0004 29 1 3.8745 -0.6808 0.8905 30 1 3.8752 -0.6797 -0.8895 31 1 8.8651 -5.5922 -1.1329 32 1 9.0430 -4.0950 -2.1042 33 1 11.2277 -5.0835 -2.3443 34 1 11.2262 -5.6964 -0.6580 35 1 11.7691 -2.9059 -1.6774 36 1 12.3870 -3.7112 -0.2035 37 1 10.0880 -1.9427 -0.4572 38 1 10.7272 -2.7166 1.0207 39 1 6.4816 -5.2430 -2.1383 40 1 5.9927 -7.6549 -2.1347 41 1 5.7481 -8.8608 -0.0034 42 1 5.9919 -7.6593 2.1305 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006994260.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:46 Heat of formation + Delta-G solvation = 119.575462 kcal Electronic energy + Delta-G solvation = -27972.479284 eV Core-core repulsion = 24106.505429 eV Total energy + Delta-G solvation = -3865.973855 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 364.082 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.12982 -39.44507 -38.93735 -36.59748 -34.31676 -33.11145 -32.74932 -31.19933 -29.69402 -29.57187 -29.22946 -28.82826 -23.68204 -23.24962 -23.00115 -22.78163 -22.17997 -20.94624 -20.24981 -18.82513 -17.11349 -16.96764 -16.67289 -16.56734 -16.26461 -15.78782 -14.92469 -14.79421 -14.33683 -14.22734 -14.14152 -13.88598 -13.64276 -13.43091 -13.05683 -12.74898 -12.67666 -12.52133 -12.38016 -11.92248 -11.84441 -11.72276 -11.53723 -11.30500 -11.11205 -10.98750 -10.87317 -10.82434 -10.72172 -10.32407 -10.21059 -9.92457 -9.82515 -9.35596 -9.32761 -9.03870 -8.85034 -8.71845 -7.07273 -6.24047 -4.29217 0.63642 0.81961 1.49277 1.88637 1.93918 2.45936 2.61546 3.14942 3.18687 3.28099 3.36538 3.42481 3.53509 4.15494 4.29246 4.31662 4.39538 4.56317 4.60889 4.84616 4.92801 4.93119 4.94760 4.95373 5.07824 5.09029 5.28701 5.35296 5.43418 5.45154 5.51925 5.62115 5.69780 5.75120 5.81394 5.85909 5.96197 5.97407 6.19591 6.33168 6.43306 6.61948 6.66812 7.23233 7.31112 8.18708 8.22965 8.72332 9.30956 10.86855 Molecular weight = 364.08amu Principal moments of inertia in cm(-1) A = 0.010698 B = 0.003649 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.664028 B = 7671.134146 C = 9084.009869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.089 3.911 3 Si 0.873 3.127 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.258 1.258 7 C -0.524 4.524 8 H 0.085 0.915 9 C 0.035 3.965 10 S -0.012 6.012 11 C 0.230 3.770 12 N -0.313 5.313 13 N -0.342 5.342 14 C 0.399 3.601 15 N -0.434 5.434 16 C 0.035 3.965 17 C -0.119 4.119 18 C -0.130 4.130 19 C 0.045 3.955 20 N -0.450 5.450 21 C 0.127 3.873 22 C -0.089 4.089 23 C -0.108 4.108 24 C -0.091 4.091 25 C -0.105 4.105 26 C -0.009 4.009 27 Cl -0.043 7.043 28 H 0.270 0.730 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.751 -18.345 -2.359 27.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.117 4.117 3 Si 0.699 3.301 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.563 4.563 8 H 0.103 0.897 9 C -0.113 4.113 10 S 0.217 5.783 11 C -0.149 4.149 12 N -0.147 5.147 13 N -0.176 5.176 14 C 0.035 3.965 15 N -0.158 5.158 16 C -0.092 4.092 17 C -0.158 4.158 18 C -0.168 4.168 19 C -0.082 4.082 20 N -0.152 5.152 21 C 0.035 3.965 22 C -0.108 4.108 23 C -0.126 4.126 24 C -0.110 4.110 25 C -0.124 4.124 26 C -0.038 4.038 27 Cl -0.014 7.014 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.153 0.847 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 20.361 -17.712 -1.747 27.044 hybrid contribution 0.723 1.244 -0.337 1.478 sum 21.084 -16.468 -2.084 26.834 Atomic orbital electron populations 1.69848 1.06145 1.27611 1.48716 1.24736 0.94705 0.98714 0.93552 0.86853 0.80762 0.83233 0.79269 1.19638 1.20681 1.18258 1.20307 0.86160 0.95551 1.54309 0.89669 1.21757 1.00641 0.87473 1.01442 1.85668 0.82584 1.19209 1.90822 1.27275 0.99756 0.85792 1.02040 1.78299 0.95728 1.17599 1.23054 1.77958 1.08130 1.07384 1.24137 1.22594 0.84486 0.89099 1.00311 1.61605 0.97455 1.20227 1.36554 1.23458 0.98158 0.97956 0.89598 1.22474 0.93162 0.98102 1.02019 1.22445 0.98089 0.96409 0.99904 1.22928 0.88107 0.94888 1.02284 1.43409 1.04079 1.04444 1.63221 1.17283 1.04785 0.81743 0.92701 1.21253 0.98164 0.94872 0.96538 1.21143 0.99180 0.93295 0.99027 1.21266 0.97643 1.00586 0.91460 1.21052 1.00022 0.91446 0.99930 1.21193 1.02087 0.93328 0.87147 1.98421 1.95509 1.77600 1.29833 0.91987 0.93019 0.93517 0.89154 0.92570 0.90216 0.90181 0.90817 0.90318 0.90290 0.89250 0.84650 0.84312 0.84295 0.83986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.96 55.43 0.77 -25.62 16 2 C 0.09 2.53 5.47 -17.82 -0.10 2.43 16 3 Si 0.87 21.54 27.47 -169.99 -4.67 16.87 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.52 -14.68 9.68 -34.44 -0.33 -15.02 16 8 H 0.09 2.54 7.96 -52.49 -0.42 2.13 16 9 C 0.04 0.88 4.40 36.01 0.16 1.04 16 10 S -0.01 -0.25 21.68 -107.50 -2.33 -2.58 16 11 C 0.23 4.68 8.08 -88.16 -0.71 3.97 16 12 N -0.31 -7.01 12.29 30.72 0.38 -6.63 16 13 N -0.34 -6.80 11.14 30.42 0.34 -6.46 16 14 C 0.40 6.64 7.02 -318.10 -2.23 4.41 16 15 N -0.43 -5.60 5.28 -170.38 -0.90 -6.50 16 16 C 0.04 0.35 5.74 -1.90 -0.01 0.34 16 17 C -0.12 -0.84 7.06 -24.87 -0.18 -1.01 16 18 C -0.13 -0.98 6.93 -25.37 -0.18 -1.16 16 19 C 0.04 0.50 6.47 -2.76 -0.02 0.48 16 20 N -0.45 -7.59 2.20 -61.19 -0.13 -7.73 16 21 C 0.13 1.75 4.40 -83.53 -0.37 1.39 16 22 C -0.09 -0.96 8.30 -39.41 -0.33 -1.29 16 23 C -0.11 -0.85 10.04 -39.60 -0.40 -1.25 16 24 C -0.09 -0.68 10.04 -39.56 -0.40 -1.08 16 25 C -0.11 -1.01 9.83 -39.58 -0.39 -1.40 16 26 C -0.01 -0.12 6.34 -39.33 -0.25 -0.37 16 27 Cl -0.04 -0.63 28.44 -51.86 -1.47 -2.11 16 28 H 0.27 7.48 8.31 -40.82 -0.34 7.15 16 29 H 0.05 1.33 7.20 -51.92 -0.37 0.95 16 30 H 0.05 1.17 7.57 -51.92 -0.39 0.78 16 31 H 0.09 0.84 6.21 -51.93 -0.32 0.52 16 32 H 0.06 0.60 8.00 -51.93 -0.42 0.18 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.08 1.04 6.83 -51.93 -0.35 0.68 16 38 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 40 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.14 0.61 8.06 -52.49 -0.42 0.18 16 42 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 LS Contribution 378.01 15.07 5.70 5.70 Total: -1.00 -33.54 378.01 -13.30 -46.84 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -5.25 Total: -3.26 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -5.73 Total: -8.52 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 0.46 Total: -52.95 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Atomic # 16 Polarization: -0.25 SS G_CDS: -2.33 Total: -2.58 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.47 Total: -2.11 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.54 -13.30 -46.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006994260.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.416 kcal (2) G-P(sol) polarization free energy of solvation -33.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds