Wall clock time and date at job start Tue Mar 31 2020 06:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99391 * 2 1 4 4 H 1.48506 * 109.46785 * 239.99953 * 3 2 1 5 5 H 1.48494 * 109.47253 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46882 * 120.00172 * 3 2 1 7 7 C 1.37869 * 120.00569 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00307 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99773 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47282 * 179.97438 * 9 7 2 11 11 S 1.65599 * 120.00418 * 165.00028 * 10 9 7 12 12 O 1.42100 * 106.40241 * 311.46108 * 11 10 9 13 13 O 1.42096 * 106.40379 * 178.53729 * 11 10 9 14 14 C 1.76199 * 107.21658 * 65.00023 * 11 10 9 15 15 C 1.38361 * 119.85555 * 269.72680 * 14 11 10 16 16 C 1.37960 * 120.14652 * 179.76598 * 15 14 11 17 17 C 1.39575 * 119.85319 * 0.50906 * 16 15 14 18 18 C 1.47845 * 120.14798 * 179.72623 * 17 16 15 19 19 O 1.21544 * 120.00309 * 180.02562 * 18 17 16 20 20 N 1.34777 * 119.99646 * 0.02562 * 18 17 16 21 21 C 1.46495 * 119.99968 * 180.02562 * 20 18 17 22 22 C 1.50699 * 109.47474 * 180.02562 * 21 20 18 23 23 C 1.34507 * 125.79072 * 89.99591 * 22 21 20 24 24 C 1.41385 * 106.84083 * 180.02562 * 23 22 21 25 25 C 1.34506 * 106.84359 * 0.02562 * 24 23 22 26 26 O 1.34307 * 125.78855 * 269.69863 * 22 21 20 27 27 C 1.39585 * 119.70815 * 359.74378 * 17 16 15 28 28 C 1.37957 * 119.85485 * 0.02562 * 27 17 16 29 29 H 0.96995 * 120.00020 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.47433 * 60.00451 * 9 7 2 31 31 H 1.08996 * 109.47407 * 299.99853 * 9 7 2 32 32 H 0.97001 * 119.99713 * 345.00235 * 10 9 7 33 33 H 1.08003 * 119.92615 * 0.02562 * 15 14 11 34 34 H 1.07998 * 120.07306 * 180.23124 * 16 15 14 35 35 H 0.97005 * 120.00205 * 0.02562 * 20 18 17 36 36 H 1.08997 * 109.47168 * 300.00118 * 21 20 18 37 37 H 1.09004 * 109.47073 * 60.00458 * 21 20 18 38 38 H 1.08003 * 126.58022 * 359.97438 * 23 22 21 39 39 H 1.08004 * 126.57576 * 179.97438 * 24 23 22 40 40 H 1.07998 * 125.79452 * 179.97438 * 25 24 23 41 41 H 1.07998 * 120.06759 * 180.02562 * 27 17 16 42 42 H 1.07993 * 119.92939 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0047 -1.1939 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2513 -2.4991 0.0017 10 7 2.2033 -3.6126 0.0015 11 16 1.6889 -5.1420 0.3737 12 8 0.9268 -5.0295 1.5677 13 8 2.8244 -5.9877 0.2532 14 6 0.5643 -5.6359 -0.8896 15 6 -0.7870 -5.3740 -0.7498 16 6 -1.6722 -5.7538 -1.7374 17 6 -1.2032 -6.4130 -2.8748 18 6 -2.1469 -6.8283 -3.9344 19 8 -1.7357 -7.4027 -4.9235 20 7 -3.4632 -6.5700 -3.8036 21 6 -4.3983 -6.9820 -4.8533 22 6 -5.7976 -6.5776 -4.4665 23 6 -6.3890 -5.4070 -4.7650 24 6 -7.6889 -5.4517 -4.2108 25 6 -7.8140 -6.6467 -3.6063 26 8 -6.6677 -7.3272 -3.7702 27 6 0.1607 -6.6789 -3.0072 28 6 1.0358 -6.2895 -2.0143 29 1 -0.4850 0.8400 -0.0004 30 1 0.6243 -2.5575 -0.8881 31 1 0.6250 -2.5563 0.8919 32 1 3.1350 -3.4539 -0.2167 33 1 -1.1492 -4.8674 0.1326 34 1 -2.7263 -5.5454 -1.6288 35 1 -3.7914 -6.1113 -3.0144 36 1 -4.1271 -6.4985 -5.7917 37 1 -4.3533 -8.0642 -4.9757 38 1 -5.9540 -4.5893 -5.3207 39 1 -8.4375 -4.6749 -4.2622 40 1 -8.6894 -7.0011 -3.0825 41 1 0.5299 -7.1883 -3.8850 42 1 2.0912 -6.4949 -2.1154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007124007.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:28 Heat of formation + Delta-G solvation = -64.854294 kcal Electronic energy + Delta-G solvation = -28932.681099 eV Core-core repulsion = 24585.707854 eV Total energy + Delta-G solvation = -4346.973245 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 364.097 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.00678 -40.43947 -38.48219 -36.81293 -35.51410 -35.42823 -34.69770 -33.40086 -32.22058 -32.08361 -31.18073 -30.40361 -26.80274 -26.60601 -24.16471 -22.86906 -22.50583 -22.18355 -21.06615 -20.92945 -19.18112 -18.74451 -17.80325 -17.46218 -17.14003 -16.78704 -16.10524 -15.97607 -15.70244 -15.51262 -15.21949 -14.88884 -14.72799 -14.42928 -14.19286 -13.73265 -13.65976 -13.47355 -13.25017 -13.07625 -13.04965 -12.90462 -12.59142 -12.38182 -12.17314 -11.87823 -11.69622 -11.60904 -11.32974 -10.97426 -10.86130 -10.77448 -10.42261 -10.28595 -10.17334 -9.65625 -9.51313 -9.40358 -9.14799 -9.01007 -8.96274 -8.30178 -6.23174 -4.27813 0.26852 0.89761 1.14820 1.21784 2.13166 2.43731 2.48299 2.94854 3.23872 3.28517 3.30418 3.45145 3.69331 4.10239 4.16856 4.30452 4.37716 4.47144 4.60224 4.61589 4.74440 4.86535 4.92391 5.09799 5.14084 5.17460 5.37921 5.38963 5.46381 5.50908 5.62528 5.82960 5.86800 5.92490 6.01829 6.04478 6.06618 6.35480 6.64973 6.67888 7.03826 7.20445 7.26405 7.72043 7.74603 7.78213 8.11024 8.75873 9.37470 10.87116 Molecular weight = 364.10amu Principal moments of inertia in cm(-1) A = 0.008750 B = 0.002455 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3199.359989 B =11403.027366 C =13421.135215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.531 4.531 8 H 0.066 0.934 9 C 0.245 3.755 10 N -1.101 6.101 11 S 2.689 3.311 12 O -0.958 6.958 13 O -0.976 6.976 14 C -0.644 4.644 15 C -0.019 4.019 16 C -0.107 4.107 17 C -0.092 4.092 18 C 0.563 3.437 19 O -0.530 6.530 20 N -0.725 5.725 21 C 0.205 3.795 22 C -0.043 4.043 23 C -0.179 4.179 24 C -0.217 4.217 25 C -0.028 4.028 26 O -0.172 6.172 27 C -0.083 4.083 28 C -0.027 4.027 29 H 0.266 0.734 30 H 0.022 0.978 31 H 0.040 0.960 32 H 0.412 0.588 33 H 0.151 0.849 34 H 0.133 0.867 35 H 0.407 0.593 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.206 0.794 41 H 0.144 0.856 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.961 -12.828 -8.469 20.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.570 4.570 8 H 0.084 0.916 9 C 0.122 3.878 10 N -0.863 5.863 11 S 2.776 3.224 12 O -0.948 6.948 13 O -0.966 6.966 14 C -0.729 4.729 15 C -0.038 4.038 16 C -0.127 4.127 17 C -0.095 4.095 18 C 0.351 3.649 19 O -0.407 6.407 20 N -0.379 5.379 21 C 0.082 3.918 22 C -0.093 4.093 23 C -0.199 4.199 24 C -0.236 4.236 25 C -0.096 4.096 26 O -0.067 6.067 27 C -0.103 4.103 28 C -0.046 4.046 29 H 0.076 0.924 30 H 0.040 0.960 31 H 0.058 0.942 32 H 0.247 0.753 33 H 0.168 0.832 34 H 0.151 0.849 35 H 0.243 0.757 36 H 0.121 0.879 37 H 0.106 0.894 38 H 0.171 0.829 39 H 0.170 0.830 40 H 0.222 0.778 41 H 0.162 0.838 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -12.765 -13.959 -8.353 20.678 hybrid contribution -0.197 1.671 -0.474 1.748 sum -12.962 -12.288 -8.827 19.923 Atomic orbital electron populations 1.69916 1.06047 1.27511 1.49374 1.24959 0.94991 0.99456 0.94705 0.86468 0.79447 0.82186 0.78807 1.20079 1.21110 1.19978 1.21146 0.93470 0.89852 1.52560 0.91591 1.19111 0.87800 0.83529 0.97328 1.55445 1.19700 1.23594 1.87607 1.01992 0.73264 0.72967 0.74170 1.93577 1.72678 1.86335 1.42209 1.93539 1.49270 1.66609 1.87159 1.31550 1.11466 1.11978 1.17902 1.20981 0.91161 0.93326 0.98352 1.21363 1.00104 0.97954 0.93265 1.20086 0.94442 1.00254 0.94706 1.18290 0.81728 0.78627 0.86262 1.90788 1.77790 1.41292 1.30790 1.45998 1.06606 1.61247 1.24039 1.19572 0.79433 1.01793 0.91019 1.22223 0.93218 0.92211 1.01658 1.21783 0.95259 0.98321 1.04554 1.21927 0.98539 0.99279 1.03889 1.24173 0.89161 0.92668 1.03619 1.84048 1.22001 1.42485 1.58205 1.21329 0.91509 0.98222 0.99227 1.20933 1.00657 0.92294 0.90713 0.92385 0.96013 0.94244 0.75327 0.83158 0.84949 0.75706 0.87938 0.89389 0.82943 0.83046 0.77773 0.83840 0.83484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.57 13.29 55.43 0.74 -23.83 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.53 -13.74 9.27 -34.44 -0.32 -14.06 16 8 H 0.07 1.63 7.65 -52.49 -0.40 1.23 16 9 C 0.25 5.77 5.98 -5.19 -0.03 5.74 16 10 N -1.10 -21.04 5.99 -11.65 -0.07 -21.11 16 11 S 2.69 47.05 5.74 -107.50 -0.62 46.43 16 12 O -0.96 -19.35 16.73 -57.17 -0.96 -20.31 16 13 O -0.98 -17.84 17.27 -57.17 -0.99 -18.83 16 14 C -0.64 -9.96 5.95 -39.49 -0.24 -10.20 16 15 C -0.02 -0.28 9.50 -39.64 -0.38 -0.65 16 16 C -0.11 -1.32 9.54 -39.19 -0.37 -1.69 16 17 C -0.09 -1.18 5.87 -104.97 -0.62 -1.80 16 18 C 0.56 6.97 7.77 -12.33 -0.10 6.88 16 19 O -0.53 -7.91 16.35 5.33 0.09 -7.83 16 20 N -0.72 -6.92 5.50 -62.44 -0.34 -7.26 16 21 C 0.20 1.73 6.20 -5.20 -0.03 1.70 16 22 C -0.04 -0.36 6.69 -35.63 -0.24 -0.60 16 23 C -0.18 -1.44 10.81 -39.70 -0.43 -1.87 16 24 C -0.22 -1.56 10.91 -39.70 -0.43 -1.99 16 25 C -0.03 -0.19 12.09 29.41 0.36 0.17 16 26 O -0.17 -1.52 10.65 5.69 0.06 -1.46 16 27 C -0.08 -1.10 9.60 -39.18 -0.38 -1.47 16 28 C -0.03 -0.37 9.50 -39.64 -0.38 -0.75 16 29 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.04 1.00 7.75 -51.93 -0.40 0.59 16 32 H 0.41 7.17 8.54 -34.47 -0.29 6.88 16 33 H 0.15 2.13 7.60 -52.48 -0.40 1.73 16 34 H 0.13 1.19 6.41 -52.49 -0.34 0.85 16 35 H 0.41 3.28 6.50 -40.82 -0.27 3.01 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.15 1.05 8.06 -52.48 -0.42 0.62 16 39 H 0.15 0.80 8.06 -52.48 -0.42 0.38 16 40 H 0.21 0.62 8.06 -52.49 -0.42 0.20 16 41 H 0.14 1.70 7.65 -52.49 -0.40 1.30 16 42 H 0.15 1.78 7.60 -52.49 -0.40 1.39 16 LS Contribution 384.12 15.07 5.79 5.79 Total: -1.00 -34.34 384.12 -9.57 -43.91 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -4.57 Total: 8.25 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -3.68 Total: -19.05 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: 0.32 Total: -52.20 kcal Atomic # 8 Polarization: -46.63 SS G_CDS: -1.80 Total: -48.43 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 47.05 SS G_CDS: -0.62 Total: 46.43 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.34 -9.57 -43.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007124007.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.942 kcal (2) G-P(sol) polarization free energy of solvation -34.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds