Wall clock time and date at job start Tue Mar 31 2020 06:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99391 * 2 1 4 4 H 1.48506 * 109.46785 * 239.99953 * 3 2 1 5 5 H 1.48494 * 109.47253 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46882 * 120.00172 * 3 2 1 7 7 C 1.37869 * 120.00569 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00307 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99773 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47282 * 179.97438 * 9 7 2 11 11 S 1.65599 * 120.00418 * 165.00028 * 10 9 7 12 12 O 1.42100 * 106.40241 * 311.46108 * 11 10 9 13 13 O 1.42096 * 106.40379 * 178.53729 * 11 10 9 14 14 C 1.76199 * 107.21658 * 65.00023 * 11 10 9 15 15 C 1.38361 * 119.85555 * 269.72680 * 14 11 10 16 16 C 1.37960 * 120.14652 * 179.76598 * 15 14 11 17 17 C 1.39575 * 119.85319 * 0.50906 * 16 15 14 18 18 C 1.47845 * 120.14798 * 179.72623 * 17 16 15 19 19 O 1.21544 * 120.00309 * 180.02562 * 18 17 16 20 20 N 1.34777 * 119.99646 * 0.02562 * 18 17 16 21 21 C 1.46495 * 119.99968 * 180.02562 * 20 18 17 22 22 C 1.50699 * 109.47474 * 180.02562 * 21 20 18 23 23 C 1.34507 * 125.79072 * 89.99591 * 22 21 20 24 24 C 1.41385 * 106.84083 * 180.02562 * 23 22 21 25 25 C 1.34506 * 106.84359 * 0.02562 * 24 23 22 26 26 O 1.34307 * 125.78855 * 269.69863 * 22 21 20 27 27 C 1.39585 * 119.70815 * 359.74378 * 17 16 15 28 28 C 1.37957 * 119.85485 * 0.02562 * 27 17 16 29 29 H 0.96995 * 120.00020 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.47433 * 60.00451 * 9 7 2 31 31 H 1.08996 * 109.47407 * 299.99853 * 9 7 2 32 32 H 0.97001 * 119.99713 * 345.00235 * 10 9 7 33 33 H 1.08003 * 119.92615 * 0.02562 * 15 14 11 34 34 H 1.07998 * 120.07306 * 180.23124 * 16 15 14 35 35 H 0.97005 * 120.00205 * 0.02562 * 20 18 17 36 36 H 1.08997 * 109.47168 * 300.00118 * 21 20 18 37 37 H 1.09004 * 109.47073 * 60.00458 * 21 20 18 38 38 H 1.08003 * 126.58022 * 359.97438 * 23 22 21 39 39 H 1.08004 * 126.57576 * 179.97438 * 24 23 22 40 40 H 1.07998 * 125.79452 * 179.97438 * 25 24 23 41 41 H 1.07998 * 120.06759 * 180.02562 * 27 17 16 42 42 H 1.07993 * 119.92939 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0047 -1.1939 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2513 -2.4991 0.0017 10 7 2.2033 -3.6126 0.0015 11 16 1.6889 -5.1420 0.3737 12 8 0.9268 -5.0295 1.5677 13 8 2.8244 -5.9877 0.2532 14 6 0.5643 -5.6359 -0.8896 15 6 -0.7870 -5.3740 -0.7498 16 6 -1.6722 -5.7538 -1.7374 17 6 -1.2032 -6.4130 -2.8748 18 6 -2.1469 -6.8283 -3.9344 19 8 -1.7357 -7.4027 -4.9235 20 7 -3.4632 -6.5700 -3.8036 21 6 -4.3983 -6.9820 -4.8533 22 6 -5.7976 -6.5776 -4.4665 23 6 -6.3890 -5.4070 -4.7650 24 6 -7.6889 -5.4517 -4.2108 25 6 -7.8140 -6.6467 -3.6063 26 8 -6.6677 -7.3272 -3.7702 27 6 0.1607 -6.6789 -3.0072 28 6 1.0358 -6.2895 -2.0143 29 1 -0.4850 0.8400 -0.0004 30 1 0.6243 -2.5575 -0.8881 31 1 0.6250 -2.5563 0.8919 32 1 3.1350 -3.4539 -0.2167 33 1 -1.1492 -4.8674 0.1326 34 1 -2.7263 -5.5454 -1.6288 35 1 -3.7914 -6.1113 -3.0144 36 1 -4.1271 -6.4985 -5.7917 37 1 -4.3533 -8.0642 -4.9757 38 1 -5.9540 -4.5893 -5.3207 39 1 -8.4375 -4.6749 -4.2622 40 1 -8.6894 -7.0011 -3.0825 41 1 0.5299 -7.1883 -3.8850 42 1 2.0912 -6.4949 -2.1154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007124007.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:27 Heat of formation + Delta-G solvation = -90.074978 kcal Electronic energy + Delta-G solvation = -28933.774750 eV Core-core repulsion = 24585.707854 eV Total energy + Delta-G solvation = -4348.066896 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 364.097 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.57867 -41.43409 -39.52860 -38.31704 -36.94503 -36.46672 -36.37062 -34.11809 -33.99387 -33.07143 -32.24980 -31.15736 -28.71516 -27.34097 -25.17403 -24.49519 -23.84180 -22.74386 -21.96959 -21.60754 -20.58077 -19.68382 -19.24340 -18.67454 -18.11937 -17.71968 -17.57062 -17.18957 -16.82189 -16.56334 -16.42301 -16.11887 -15.77356 -15.57234 -15.20607 -15.07250 -14.69957 -14.56853 -14.43475 -14.11671 -14.06546 -13.84102 -13.79948 -13.57552 -13.57297 -13.22201 -13.12830 -13.04338 -12.73054 -12.55933 -12.40067 -12.13670 -12.04494 -11.43239 -11.40865 -10.92015 -10.83820 -10.67149 -10.32906 -10.22007 -10.10612 -9.57783 -8.23459 -6.34600 -0.86498 -0.50323 0.15085 0.55286 1.40467 1.46748 1.48246 1.55897 1.56452 1.88388 2.11611 2.18955 2.42967 2.49044 2.78432 3.11834 3.28282 3.41012 3.55593 3.68580 3.75561 4.07359 4.09727 4.12187 4.24144 4.32459 4.41136 4.45058 4.61421 4.78277 4.85629 4.86160 4.91214 4.97095 5.00814 5.05389 5.12487 5.29354 5.33176 5.52558 5.57984 5.76084 5.99326 6.11937 6.20243 6.32063 6.78856 6.86815 7.34740 8.87183 Molecular weight = 364.10amu Principal moments of inertia in cm(-1) A = 0.008750 B = 0.002455 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3199.359989 B =11403.027366 C =13421.135215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.011 3.989 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.258 3.742 10 N -1.101 6.101 11 S 2.709 3.291 12 O -0.989 6.989 13 O -0.982 6.982 14 C -0.655 4.655 15 C -0.036 4.036 16 C -0.099 4.099 17 C -0.092 4.092 18 C 0.565 3.435 19 O -0.558 6.558 20 N -0.711 5.711 21 C 0.206 3.794 22 C -0.057 4.057 23 C -0.185 4.185 24 C -0.233 4.233 25 C -0.024 4.024 26 O -0.188 6.188 27 C -0.086 4.086 28 C -0.030 4.030 29 H 0.268 0.732 30 H 0.015 0.985 31 H 0.016 0.984 32 H 0.419 0.581 33 H 0.148 0.852 34 H 0.166 0.834 35 H 0.414 0.586 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.160 0.840 39 H 0.168 0.832 40 H 0.238 0.762 41 H 0.157 0.843 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.715 -12.719 -9.266 20.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.189 4.189 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.590 4.590 8 H 0.092 0.908 9 C 0.133 3.867 10 N -0.863 5.863 11 S 2.799 3.201 12 O -0.979 6.979 13 O -0.972 6.972 14 C -0.743 4.743 15 C -0.056 4.056 16 C -0.118 4.118 17 C -0.095 4.095 18 C 0.353 3.647 19 O -0.437 6.437 20 N -0.364 5.364 21 C 0.084 3.916 22 C -0.107 4.107 23 C -0.205 4.205 24 C -0.252 4.252 25 C -0.092 4.092 26 O -0.084 6.084 27 C -0.105 4.105 28 C -0.049 4.049 29 H 0.077 0.923 30 H 0.032 0.968 31 H 0.034 0.966 32 H 0.255 0.745 33 H 0.166 0.834 34 H 0.183 0.817 35 H 0.252 0.748 36 H 0.127 0.873 37 H 0.105 0.895 38 H 0.178 0.822 39 H 0.186 0.814 40 H 0.255 0.745 41 H 0.175 0.825 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -13.495 -13.835 -9.112 21.367 hybrid contribution -0.088 1.548 -0.272 1.574 sum -13.583 -12.288 -9.385 20.580 Atomic orbital electron populations 1.70026 1.07456 1.28396 1.50303 1.25818 0.95822 1.02948 0.94335 0.85453 0.78219 0.77969 0.79092 1.19146 1.20873 1.19502 1.21594 0.94172 0.91016 1.52215 0.90842 1.18705 0.87976 0.84210 0.95774 1.55266 1.19690 1.23471 1.87895 1.01151 0.72964 0.72082 0.73863 1.93532 1.73220 1.86545 1.44596 1.93522 1.50050 1.66241 1.87427 1.31120 1.11340 1.13865 1.17965 1.21129 0.91278 0.94001 0.99147 1.21636 1.01428 0.96622 0.92092 1.20285 0.94663 0.99685 0.94902 1.18185 0.82391 0.78457 0.85678 1.90778 1.78375 1.42809 1.31762 1.45953 1.05865 1.60137 1.24477 1.19607 0.79399 1.01810 0.90811 1.22156 0.93260 0.92557 1.02729 1.22034 0.95816 0.98337 1.04313 1.22236 0.98650 1.00138 1.04154 1.24895 0.89193 0.92340 1.02763 1.84042 1.22753 1.43133 1.58492 1.21537 0.91701 0.97934 0.99358 1.21138 1.01693 0.91895 0.90220 0.92272 0.96751 0.96588 0.74494 0.83412 0.81706 0.74767 0.87335 0.89466 0.82233 0.81435 0.74543 0.82524 0.81978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.25 13.29 21.45 0.28 -50.97 16 2 C 0.01 0.58 5.46 84.65 0.46 1.05 16 3 Si 0.97 41.25 29.54 68.60 2.03 43.27 16 4 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.55 -28.57 9.27 25.60 0.24 -28.33 16 8 H 0.07 3.60 7.65 -2.91 -0.02 3.57 16 9 C 0.26 12.33 5.98 85.63 0.51 12.85 16 10 N -1.10 -42.49 5.99 -190.79 -1.14 -43.63 16 11 S 2.71 95.55 5.74 -56.49 -0.32 95.22 16 12 O -0.99 -40.82 16.73 -128.00 -2.14 -42.96 16 13 O -0.98 -35.58 17.27 -128.00 -2.21 -37.79 16 14 C -0.65 -20.08 5.95 22.33 0.13 -19.95 16 15 C -0.04 -1.04 9.50 22.23 0.21 -0.83 16 16 C -0.10 -2.28 9.54 22.53 0.21 -2.07 16 17 C -0.09 -2.24 5.87 -20.09 -0.12 -2.36 16 18 C 0.57 13.23 7.77 86.79 0.67 13.90 16 19 O -0.56 -16.10 16.35 -3.85 -0.06 -16.16 16 20 N -0.71 -12.48 5.50 -469.73 -2.58 -15.06 16 21 C 0.21 3.25 6.20 85.63 0.53 3.78 16 22 C -0.06 -0.90 6.69 24.83 0.17 -0.73 16 23 C -0.18 -2.71 10.81 22.19 0.24 -2.47 16 24 C -0.23 -2.91 10.91 22.19 0.24 -2.66 16 25 C -0.02 -0.27 12.09 66.97 0.81 0.54 16 26 O -0.19 -3.05 10.65 -2.57 -0.03 -3.07 16 27 C -0.09 -2.15 9.60 22.53 0.22 -1.94 16 28 C -0.03 -0.81 9.50 22.23 0.21 -0.60 16 29 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 30 H 0.01 0.71 8.14 -2.38 -0.02 0.70 16 31 H 0.02 0.84 7.75 -2.39 -0.02 0.82 16 32 H 0.42 14.60 8.54 -96.74 -0.83 13.77 16 33 H 0.15 4.26 7.60 -2.91 -0.02 4.24 16 34 H 0.17 2.60 6.41 -2.91 -0.02 2.58 16 35 H 0.41 5.88 6.50 -92.70 -0.60 5.27 16 36 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 39 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 40 H 0.24 0.74 8.06 -2.91 -0.02 0.72 16 41 H 0.16 3.49 7.65 -2.91 -0.02 3.47 16 42 H 0.16 3.75 7.60 -2.91 -0.02 3.73 16 Total: -1.00 -72.63 384.12 -1.77 -74.40 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: -0.33 Total: 26.61 kcal Atomic # 6 Polarization: -34.58 SS G_CDS: 4.74 Total: -29.84 kcal Atomic # 7 Polarization: -106.22 SS G_CDS: -3.44 Total: -109.66 kcal Atomic # 8 Polarization: -95.55 SS G_CDS: -4.44 Total: -99.99 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.27 kcal Atomic # 16 Polarization: 95.55 SS G_CDS: -0.32 Total: 95.22 kcal Total: -72.63 -1.77 -74.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007124007.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.679 kcal (2) G-P(sol) polarization free energy of solvation -72.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds