Wall clock time and date at job start Tue Mar 31 2020 05:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31732 * 1 3 3 Si 1.86806 * 120.00108 * 2 1 4 4 H 1.48498 * 109.47202 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47049 * 300.00337 * 3 2 1 6 6 H 1.48501 * 109.47029 * 59.99873 * 3 2 1 7 7 C 1.38519 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99844 * 180.02562 * 7 2 1 9 9 S 1.76192 * 120.00164 * 359.97438 * 7 2 1 10 10 C 1.76201 * 100.00318 * 180.02562 * 9 7 2 11 11 N 1.30246 * 126.08553 * 359.97438 * 10 9 7 12 12 N 1.26102 * 117.71688 * 179.97438 * 11 10 9 13 13 C 1.30280 * 117.70534 * 0.02562 * 12 11 10 14 14 N 1.38672 * 126.08841 * 179.97438 * 13 12 11 15 15 C 1.39932 * 120.00278 * 5.62110 * 14 13 12 16 16 C 1.38893 * 120.02225 * 28.91002 * 15 14 13 17 17 C 1.38088 * 119.97855 * 179.97438 * 16 15 14 18 18 C 1.38713 * 120.02381 * 0.26952 * 17 16 15 19 19 O 1.35986 * 119.98176 * 179.72587 * 18 17 16 20 20 C 1.42902 * 117.00183 * 179.97438 * 19 18 17 21 21 F 1.39901 * 109.47120 * 60.00220 * 20 19 18 22 22 F 1.39897 * 109.47214 * 180.02562 * 20 19 18 23 23 F 1.39907 * 109.47193 * 300.00402 * 20 19 18 24 24 C 1.38727 * 120.03837 * 359.45066 * 18 17 16 25 25 C 1.38081 * 120.02178 * 0.55210 * 24 18 17 26 26 S 1.76472 * 107.81516 * 0.25861 * 13 12 11 27 27 H 0.97004 * 119.99993 * 359.97438 * 1 2 3 28 28 H 0.97005 * 119.99558 * 185.62322 * 14 13 12 29 29 H 1.07999 * 120.01103 * 359.94794 * 16 15 14 30 30 H 1.08005 * 119.98747 * 179.97438 * 17 16 15 31 31 H 1.08004 * 119.98779 * 180.25573 * 24 18 17 32 32 H 1.08004 * 120.01551 * 179.70292 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3173 0.0000 0.0000 3 14 2.2514 1.6178 0.0000 4 1 3.7114 1.3464 -0.0006 5 1 1.8926 2.3965 -1.2124 6 1 1.8926 2.3965 1.2125 7 6 2.0099 -1.1996 -0.0005 8 1 3.0900 -1.1996 -0.0001 9 16 1.1290 -2.7255 -0.0005 10 6 2.4787 -3.8581 -0.0005 11 7 3.7430 -3.5450 -0.0010 12 7 4.5807 -4.4875 -0.0004 13 6 4.1209 -5.7065 0.0001 14 7 4.8812 -6.8663 0.0003 15 6 6.2734 -6.7902 0.1186 16 6 6.8557 -5.7339 0.8072 17 6 8.2296 -5.6600 0.9238 18 6 9.0285 -6.6374 0.3488 19 8 10.3817 -6.5608 0.4594 20 6 11.1430 -7.6017 -0.1564 21 9 10.8787 -7.6224 -1.5301 22 9 12.5064 -7.3688 0.0532 23 9 10.7889 -8.8332 0.4052 24 6 8.4476 -7.6960 -0.3342 25 6 7.0740 -7.7715 -0.4520 26 16 2.3584 -5.6188 -0.0078 27 1 -0.4850 0.8401 0.0004 28 1 4.4478 -7.7302 -0.0817 29 1 6.2341 -4.9702 1.2508 30 1 8.6826 -4.8384 1.4589 31 1 9.0703 -8.4587 -0.7781 32 1 6.6220 -8.5932 -0.9878 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007309264.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:02 Heat of formation + Delta-G solvation = -98.370438 kcal Electronic energy + Delta-G solvation = -25919.658144 eV Core-core repulsion = 21298.180134 eV Total energy + Delta-G solvation = -4621.478011 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 363.006 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.71269 -48.43962 -48.30219 -40.61372 -39.97879 -38.37880 -35.40372 -32.88447 -31.42323 -30.16307 -28.94589 -26.32521 -25.85983 -25.16228 -23.29429 -22.72621 -20.43792 -19.89798 -19.49312 -19.41970 -18.92632 -18.11694 -17.30801 -16.84258 -16.71078 -15.50514 -15.35126 -15.24088 -15.11715 -14.97216 -14.93289 -14.75856 -14.67853 -14.47703 -14.40238 -14.23808 -13.53763 -13.48923 -13.23747 -12.96195 -12.73260 -12.70404 -11.50399 -11.44440 -11.30064 -11.22008 -11.14428 -10.38436 -9.87819 -9.79344 -9.62301 -9.24995 -9.19555 -9.01239 -8.99249 -7.80554 -6.83659 -6.67724 -4.38331 0.80294 1.09827 1.11782 1.27369 1.39698 1.78015 2.57835 2.67250 3.07580 3.13988 3.20003 3.25740 3.28142 3.51663 3.52299 3.76455 3.86120 4.44047 4.54248 4.78535 4.85302 4.86942 5.08178 5.09217 5.39713 5.69592 5.72188 5.88773 5.90496 6.13592 6.37999 6.61011 7.00951 7.22898 7.37764 8.18345 8.84356 9.41669 10.39015 Molecular weight = 363.01amu Principal moments of inertia in cm(-1) A = 0.016638 B = 0.002092 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.525460 B =13379.004376 C =14787.769001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.077 3.923 3 Si 0.935 3.065 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.538 4.538 8 H 0.110 0.890 9 S 0.203 5.797 10 C -0.004 4.004 11 N -0.272 5.272 12 N -0.292 5.292 13 C 0.216 3.784 14 N -0.627 5.627 15 C 0.171 3.829 16 C -0.097 4.097 17 C -0.089 4.089 18 C 0.066 3.934 19 O -0.310 6.310 20 C 0.603 3.397 21 F -0.166 7.166 22 F -0.135 7.135 23 F -0.168 7.168 24 C -0.162 4.162 25 C -0.123 4.123 26 S 0.023 5.977 27 H 0.278 0.722 28 H 0.421 0.579 29 H 0.156 0.844 30 H 0.141 0.859 31 H 0.133 0.867 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.510 -17.326 0.350 22.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.134 4.134 3 Si 0.759 3.241 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.689 4.689 8 H 0.128 0.872 9 S 0.441 5.559 10 C -0.389 4.389 11 N -0.116 5.116 12 N -0.135 5.135 13 C -0.162 4.162 14 N -0.259 5.259 15 C 0.071 3.929 16 C -0.119 4.119 17 C -0.109 4.109 18 C 0.023 3.977 19 O -0.230 6.230 20 C 0.512 3.488 21 F -0.148 7.148 22 F -0.116 7.116 23 F -0.150 7.150 24 C -0.181 4.181 25 C -0.146 4.146 26 S 0.258 5.742 27 H 0.088 0.912 28 H 0.259 0.741 29 H 0.173 0.827 30 H 0.159 0.841 31 H 0.151 0.849 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 13.372 -16.865 0.416 21.527 hybrid contribution 1.715 0.401 -0.293 1.785 sum 15.086 -16.464 0.123 22.331 Atomic orbital electron populations 1.69988 1.06154 1.28943 1.45156 1.25160 0.95256 1.00056 0.92887 0.85828 0.80220 0.79887 0.78148 1.18640 1.20141 1.20125 1.23493 0.97732 0.89580 1.58048 0.87217 1.83552 0.97925 0.95549 1.78888 1.32126 1.02695 0.96804 1.07286 1.71439 0.96763 1.21702 1.21742 1.71096 1.28961 0.94008 1.19470 1.26192 0.90690 0.90900 1.08378 1.40786 1.02646 1.04565 1.77912 1.17716 0.82210 0.96500 0.96448 1.21148 0.93671 0.99153 0.97909 1.20274 0.91887 0.97874 1.00831 1.18590 0.78307 0.98059 1.02732 1.86424 1.18796 1.45103 1.72649 1.19372 0.77464 0.76637 0.75340 1.93302 1.93668 1.95955 1.31920 1.93296 1.28991 1.94484 1.94861 1.93291 1.91730 1.44781 1.85169 1.21166 0.96092 0.98346 1.02467 1.20503 0.92161 1.00628 1.01270 1.85249 1.03345 1.07424 1.78164 0.91225 0.74099 0.82696 0.84142 0.84911 0.84838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.99 13.22 55.48 0.73 -22.26 16 2 C 0.08 1.99 5.49 -17.49 -0.10 1.90 16 3 Si 0.93 20.21 29.55 -169.99 -5.02 15.19 16 4 H -0.26 -5.73 7.11 56.52 0.40 -5.32 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.54 -14.21 9.36 30.84 0.29 -13.92 16 8 H 0.11 2.99 6.91 -52.48 -0.36 2.63 16 9 S 0.20 4.79 21.89 -107.50 -2.35 2.44 16 10 C 0.00 -0.09 7.82 52.09 0.41 0.31 16 11 N -0.27 -6.24 10.37 31.30 0.32 -5.91 16 12 N -0.29 -5.88 8.84 30.99 0.27 -5.61 16 13 C 0.22 3.60 8.17 -87.13 -0.71 2.89 16 14 N -0.63 -7.84 5.51 -10.15 -0.06 -7.90 16 15 C 0.17 2.14 6.43 -83.67 -0.54 1.60 16 16 C -0.10 -1.33 8.81 -39.39 -0.35 -1.68 16 17 C -0.09 -1.09 9.98 -39.46 -0.39 -1.48 16 18 C 0.07 0.77 6.48 -39.23 -0.25 0.52 16 19 O -0.31 -3.44 10.38 -19.70 -0.20 -3.64 16 20 C 0.60 5.70 3.42 101.05 0.35 6.04 16 21 F -0.17 -1.59 15.57 2.25 0.04 -1.55 16 22 F -0.13 -1.22 17.53 2.25 0.04 -1.18 16 23 F -0.17 -1.51 15.54 2.25 0.04 -1.47 16 24 C -0.16 -1.70 8.25 -39.46 -0.33 -2.02 16 25 C -0.12 -1.27 9.95 -39.39 -0.39 -1.66 16 26 S 0.02 0.39 23.53 -107.50 -2.53 -2.14 16 27 H 0.28 6.81 8.32 -40.82 -0.34 6.47 16 28 H 0.42 3.80 8.92 -40.82 -0.36 3.44 16 29 H 0.16 2.44 6.10 -52.49 -0.32 2.12 16 30 H 0.14 1.50 8.06 -52.48 -0.42 1.08 16 31 H 0.13 1.20 5.09 -52.48 -0.27 0.93 16 32 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 LS Contribution 328.87 15.07 4.96 4.96 Total: -1.00 -28.43 328.87 -7.08 -35.51 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -1.29 Total: 1.08 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -2.02 Total: -7.50 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 1.28 Total: -41.67 kcal Atomic # 8 Polarization: -3.44 SS G_CDS: -0.20 Total: -3.64 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.11 Total: -4.21 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: 5.18 SS G_CDS: -4.88 Total: 0.30 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.43 -7.08 -35.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007309264.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.865 kcal (2) G-P(sol) polarization free energy of solvation -28.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds