Wall clock time and date at job start Tue Mar 31 2020 06:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46938 * 2 1 4 4 S 1.81398 * 109.47018 * 240.00115 * 2 1 3 5 5 C 1.76199 * 103.00101 * 64.99926 * 4 2 1 6 6 N 1.29643 * 125.41284 * 359.69002 * 5 4 2 7 7 N 1.37761 * 115.60556 * 179.79761 * 6 5 4 8 8 C 1.29584 * 115.62516 * 0.50181 * 7 6 5 9 9 N 1.38992 * 125.40395 * 179.75682 * 8 7 6 10 10 S 1.76039 * 125.41150 * 180.02562 * 5 4 2 11 11 C 1.50703 * 109.47133 * 120.00065 * 2 1 3 12 12 O 1.21291 * 119.99836 * 68.07110 * 11 2 1 13 13 N 1.34773 * 119.99976 * 248.06979 * 11 2 1 14 14 C 1.46507 * 119.99680 * 6.50825 * 13 11 2 15 15 C 1.50697 * 109.46755 * 262.02239 * 14 13 11 16 16 H 1.08005 * 119.99737 * 113.91529 * 15 14 13 17 17 C 1.37880 * 120.00323 * 293.91501 * 15 14 13 18 18 N 1.31505 * 119.99957 * 354.70401 * 17 15 14 19 19 Si 1.86808 * 119.99765 * 174.70194 * 17 15 14 20 20 H 1.48496 * 109.46782 * 60.00233 * 19 17 15 21 21 H 1.48496 * 109.46763 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47176 * 300.00331 * 19 17 15 23 23 C 1.39922 * 120.00264 * 186.50265 * 13 11 2 24 24 C 1.38869 * 120.07048 * 237.64290 * 23 13 11 25 25 C 1.38122 * 119.92490 * 179.76597 * 24 23 13 26 26 C 1.38284 * 120.06822 * 0.48408 * 25 24 23 27 27 C 1.38280 * 120.14221 * 359.76546 * 26 25 24 28 28 C 1.38109 * 120.07070 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.47140 * 188.92663 * 1 2 3 30 30 H 1.09000 * 109.46829 * 308.92765 * 1 2 3 31 31 H 1.08998 * 109.47279 * 68.93142 * 1 2 3 32 32 H 0.97004 * 119.99787 * 179.97438 * 9 8 7 33 33 H 0.97002 * 120.00663 * 359.97438 * 9 8 7 34 34 H 1.09000 * 109.46852 * 142.03129 * 14 13 11 35 35 H 1.08996 * 109.47190 * 22.02472 * 14 13 11 36 36 H 0.97000 * 119.99927 * 175.07875 * 18 17 15 37 37 H 1.07996 * 120.04016 * 359.97438 * 24 23 13 38 38 H 1.08004 * 119.96396 * 180.25126 * 25 24 23 39 39 H 1.08005 * 119.92100 * 179.74947 * 26 25 24 40 40 H 1.08001 * 119.96048 * 179.97438 * 27 26 25 41 41 H 1.08007 * 120.03319 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1346 -0.8551 -1.4811 5 6 1.5827 0.1846 -2.7922 6 7 0.9046 1.2801 -2.6476 7 7 0.5814 1.9386 -3.8137 8 6 0.9875 1.3740 -4.9071 9 7 0.7707 1.8581 -6.1918 10 16 1.8572 -0.1033 -4.5070 11 6 2.0324 -0.7104 1.2305 12 8 1.8646 -1.9056 1.3516 13 7 2.6680 -0.0178 2.1962 14 6 2.7456 1.4432 2.1194 15 6 4.0783 1.8456 1.5424 16 1 4.1250 2.3315 0.5789 17 6 5.2380 1.5937 2.2444 18 7 5.1757 1.0979 3.4608 19 14 6.8976 1.9565 1.4674 20 1 6.9845 3.4019 1.1381 21 1 7.9789 1.5996 2.4205 22 1 7.0486 1.1560 0.2258 23 6 3.2535 -0.6940 3.2722 24 6 2.8704 -0.3954 4.5732 25 6 3.4469 -1.0682 5.6328 26 6 4.4118 -2.0309 5.3998 27 6 4.7992 -2.3267 4.1057 28 6 4.2235 -1.6607 3.0416 29 1 -0.3633 -1.0152 0.1595 30 1 -0.3633 0.6457 0.7995 31 1 -0.3634 0.3694 -0.9589 32 1 1.1115 1.3702 -6.9579 33 1 0.2786 2.6837 -6.3225 34 1 2.6399 1.8656 3.1187 35 1 1.9454 1.8165 1.4805 36 1 5.9903 0.8538 3.9274 37 1 2.1200 0.3595 4.7561 38 1 3.1464 -0.8394 6.6447 39 1 4.8639 -2.5526 6.2303 40 1 5.5534 -3.0789 3.9271 41 1 4.5268 -1.8919 2.0311 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007535837.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:47 Heat of formation + Delta-G solvation = 74.942362 kcal Electronic energy + Delta-G solvation = -27902.641134 eV Core-core repulsion = 24036.775548 eV Total energy + Delta-G solvation = -3865.865585 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 364.077 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.74922 -39.36317 -37.60240 -35.34680 -35.01038 -32.81584 -32.38899 -30.37947 -29.97910 -29.16542 -27.09772 -25.00019 -24.50595 -23.14987 -21.72622 -21.60604 -21.33407 -19.76506 -18.80179 -17.64879 -16.96128 -16.85274 -16.59794 -15.83608 -15.69251 -15.22868 -15.06561 -14.82095 -14.52218 -13.98192 -13.72547 -13.60149 -13.37993 -12.94179 -12.68301 -12.51569 -12.40512 -12.12966 -11.96100 -11.88683 -11.62700 -11.40546 -11.04543 -10.93169 -10.86933 -10.71621 -10.42296 -10.24739 -10.05217 -9.97582 -9.77489 -9.68419 -9.18175 -8.99792 -8.67521 -8.45053 -7.91475 -7.57120 -7.06480 -6.21709 -4.34943 0.28061 0.75936 0.99050 1.34426 2.06019 2.28203 2.39920 2.42876 3.06555 3.21077 3.28070 3.30642 3.41757 3.84160 4.28406 4.73615 4.76219 4.97473 5.10234 5.14668 5.37805 5.49424 5.75748 5.79908 5.88243 5.94619 6.03821 6.23705 6.31814 6.43057 6.46557 6.46845 6.61780 6.90813 6.94321 7.03361 7.29147 7.40242 7.48152 7.57858 7.64365 7.93308 7.97956 8.03276 8.28429 8.71514 8.92505 9.34132 10.77921 Molecular weight = 364.08amu Principal moments of inertia in cm(-1) A = 0.012982 B = 0.003322 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.348232 B = 8427.034651 C = 9475.930686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 H 0.136 0.864 4 S 0.071 5.929 5 C 0.020 3.980 6 N -0.256 5.256 7 N -0.355 5.355 8 C 0.311 3.689 9 N -0.812 5.812 10 S 0.067 5.933 11 C 0.531 3.469 12 O -0.547 6.547 13 N -0.534 5.534 14 C 0.217 3.783 15 C -0.548 4.548 16 H 0.062 0.938 17 C 0.084 3.916 18 N -0.847 5.847 19 Si 0.886 3.114 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.238 3.762 24 C -0.108 4.108 25 C -0.108 4.108 26 C -0.149 4.149 27 C -0.114 4.114 28 C -0.102 4.102 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.416 0.584 33 H 0.416 0.584 34 H 0.052 0.948 35 H 0.040 0.960 36 H 0.269 0.731 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.229 -2.525 -11.716 13.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.237 4.237 3 H 0.153 0.847 4 S 0.300 5.700 5 C -0.380 4.380 6 N -0.085 5.085 7 N -0.192 5.192 8 C -0.075 4.075 9 N -0.367 5.367 10 S 0.297 5.703 11 C 0.316 3.684 12 O -0.427 6.427 13 N -0.260 5.260 14 C 0.101 3.899 15 C -0.586 4.586 16 H 0.080 0.920 17 C -0.125 4.125 18 N -0.480 5.480 19 Si 0.713 3.287 20 H -0.201 1.201 21 H -0.210 1.210 22 H -0.200 1.200 23 C 0.146 3.854 24 C -0.128 4.128 25 C -0.127 4.127 26 C -0.168 4.168 27 C -0.133 4.133 28 C -0.122 4.122 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.247 0.753 33 H 0.249 0.751 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.852 -3.693 -11.243 13.202 hybrid contribution 0.618 1.772 -0.853 2.062 sum -5.234 -1.920 -12.096 13.319 Atomic orbital electron populations 1.21933 0.90421 1.03528 1.03744 1.23737 1.01347 1.05361 0.93289 0.84663 1.85915 1.67118 1.24954 0.92050 1.30547 1.04632 1.02046 1.00763 1.75475 1.12867 1.03814 1.16369 1.75116 1.26313 1.25442 0.92341 1.25896 0.96105 0.93735 0.91731 1.41379 1.64155 1.30184 1.01010 1.85493 1.59786 1.24852 1.00156 1.19453 0.78794 0.86746 0.83431 1.90677 1.58016 1.14693 1.79284 1.46753 1.49591 1.10031 1.19637 1.19694 0.96464 0.74957 0.98787 1.21289 0.91300 1.40746 1.05307 0.92028 1.24967 0.99266 0.94089 0.94165 1.69938 1.29198 1.38913 1.09992 0.86746 0.83500 0.79001 0.79488 1.20058 1.21022 1.19981 1.17095 0.91017 0.90842 0.86487 1.20640 1.00618 0.99863 0.91719 1.20621 0.97543 0.97055 0.97484 1.20700 0.99875 1.00201 0.96017 1.20665 0.99893 0.99993 0.92744 1.20740 0.95610 0.97675 0.98195 0.90973 0.91007 0.90619 0.75263 0.75092 0.92998 0.94185 0.92004 0.87515 0.87512 0.87784 0.87651 0.87837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.12 37.16 0.34 -1.84 16 2 C -0.10 -1.91 2.35 -27.88 -0.07 -1.98 16 3 H 0.14 2.62 5.62 -51.92 -0.29 2.33 16 4 S 0.07 1.21 21.35 -107.50 -2.30 -1.09 16 5 C 0.02 0.32 7.49 51.84 0.39 0.70 16 6 N -0.26 -4.37 10.01 31.11 0.31 -4.06 16 7 N -0.36 -5.53 12.10 30.85 0.37 -5.15 16 8 C 0.31 3.68 8.93 -87.39 -0.78 2.90 16 9 N -0.81 -5.55 9.10 30.83 0.28 -5.26 16 10 S 0.07 0.80 23.39 -107.50 -2.51 -1.72 16 11 C 0.53 11.31 6.24 -10.99 -0.07 11.24 16 12 O -0.55 -12.65 16.17 5.55 0.09 -12.56 16 13 N -0.53 -11.95 2.57 -114.74 -0.29 -12.25 16 14 C 0.22 4.91 5.05 -5.19 -0.03 4.88 16 15 C -0.55 -13.62 9.34 -34.44 -0.32 -13.94 16 16 H 0.06 1.54 7.82 -52.48 -0.41 1.13 16 17 C 0.08 2.10 5.30 -17.82 -0.09 2.00 16 18 N -0.85 -21.43 9.56 55.43 0.53 -20.90 16 19 Si 0.89 20.22 29.54 -169.99 -5.02 15.20 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 C 0.24 5.40 2.79 -83.70 -0.23 5.16 16 24 C -0.11 -2.28 8.77 -39.39 -0.35 -2.63 16 25 C -0.11 -2.04 10.04 -39.61 -0.40 -2.44 16 26 C -0.15 -2.75 10.04 -39.55 -0.40 -3.14 16 27 C -0.11 -2.26 10.04 -39.61 -0.40 -2.65 16 28 C -0.10 -2.30 8.35 -39.40 -0.33 -2.63 16 29 H 0.07 1.13 8.05 -51.93 -0.42 0.72 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 1.18 6.11 -51.93 -0.32 0.86 16 32 H 0.42 1.58 8.96 -40.82 -0.37 1.21 16 33 H 0.42 2.26 8.96 -40.82 -0.37 1.90 16 34 H 0.05 1.22 7.38 -51.93 -0.38 0.84 16 35 H 0.04 0.82 5.95 -51.93 -0.31 0.51 16 36 H 0.27 6.81 8.32 -40.82 -0.34 6.47 16 37 H 0.11 2.14 7.78 -52.49 -0.41 1.74 16 38 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 39 H 0.10 1.61 8.06 -52.48 -0.42 1.18 16 40 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.10 2.42 8.06 -52.48 -0.42 2.00 16 LS Contribution 374.29 15.07 5.64 5.64 Total: -1.00 -30.09 374.29 -10.15 -40.24 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -4.52 Total: 6.28 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -2.73 Total: -4.37 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 1.20 Total: -47.62 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.09 Total: -12.56 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -4.81 Total: -2.80 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.09 -10.15 -40.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007535837.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.179 kcal (2) G-P(sol) polarization free energy of solvation -30.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds