Wall clock time and date at job start Tue Mar 31 2020 06:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46938 * 2 1 4 4 S 1.81398 * 109.47018 * 240.00115 * 2 1 3 5 5 C 1.76199 * 103.00101 * 64.99926 * 4 2 1 6 6 N 1.29643 * 125.41284 * 359.69002 * 5 4 2 7 7 N 1.37761 * 115.60556 * 179.79761 * 6 5 4 8 8 C 1.29584 * 115.62516 * 0.50181 * 7 6 5 9 9 N 1.38992 * 125.40395 * 179.75682 * 8 7 6 10 10 S 1.76039 * 125.41150 * 180.02562 * 5 4 2 11 11 C 1.50703 * 109.47133 * 120.00065 * 2 1 3 12 12 O 1.21291 * 119.99836 * 68.07110 * 11 2 1 13 13 N 1.34773 * 119.99976 * 248.06979 * 11 2 1 14 14 C 1.46507 * 119.99680 * 6.50825 * 13 11 2 15 15 C 1.50697 * 109.46755 * 262.02239 * 14 13 11 16 16 H 1.08005 * 119.99737 * 113.91529 * 15 14 13 17 17 C 1.37880 * 120.00323 * 293.91501 * 15 14 13 18 18 N 1.31505 * 119.99957 * 354.70401 * 17 15 14 19 19 Si 1.86808 * 119.99765 * 174.70194 * 17 15 14 20 20 H 1.48496 * 109.46782 * 60.00233 * 19 17 15 21 21 H 1.48496 * 109.46763 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47176 * 300.00331 * 19 17 15 23 23 C 1.39922 * 120.00264 * 186.50265 * 13 11 2 24 24 C 1.38869 * 120.07048 * 237.64290 * 23 13 11 25 25 C 1.38122 * 119.92490 * 179.76597 * 24 23 13 26 26 C 1.38284 * 120.06822 * 0.48408 * 25 24 23 27 27 C 1.38280 * 120.14221 * 359.76546 * 26 25 24 28 28 C 1.38109 * 120.07070 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.47140 * 188.92663 * 1 2 3 30 30 H 1.09000 * 109.46829 * 308.92765 * 1 2 3 31 31 H 1.08998 * 109.47279 * 68.93142 * 1 2 3 32 32 H 0.97004 * 119.99787 * 179.97438 * 9 8 7 33 33 H 0.97002 * 120.00663 * 359.97438 * 9 8 7 34 34 H 1.09000 * 109.46852 * 142.03129 * 14 13 11 35 35 H 1.08996 * 109.47190 * 22.02472 * 14 13 11 36 36 H 0.97000 * 119.99927 * 175.07875 * 18 17 15 37 37 H 1.07996 * 120.04016 * 359.97438 * 24 23 13 38 38 H 1.08004 * 119.96396 * 180.25126 * 25 24 23 39 39 H 1.08005 * 119.92100 * 179.74947 * 26 25 24 40 40 H 1.08001 * 119.96048 * 179.97438 * 27 26 25 41 41 H 1.08007 * 120.03319 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1346 -0.8551 -1.4811 5 6 1.5827 0.1846 -2.7922 6 7 0.9046 1.2801 -2.6476 7 7 0.5814 1.9386 -3.8137 8 6 0.9875 1.3740 -4.9071 9 7 0.7707 1.8581 -6.1918 10 16 1.8572 -0.1033 -4.5070 11 6 2.0324 -0.7104 1.2305 12 8 1.8646 -1.9056 1.3516 13 7 2.6680 -0.0178 2.1962 14 6 2.7456 1.4432 2.1194 15 6 4.0783 1.8456 1.5424 16 1 4.1250 2.3315 0.5789 17 6 5.2380 1.5937 2.2444 18 7 5.1757 1.0979 3.4608 19 14 6.8976 1.9565 1.4674 20 1 6.9845 3.4019 1.1381 21 1 7.9789 1.5996 2.4205 22 1 7.0486 1.1560 0.2258 23 6 3.2535 -0.6940 3.2722 24 6 2.8704 -0.3954 4.5732 25 6 3.4469 -1.0682 5.6328 26 6 4.4118 -2.0309 5.3998 27 6 4.7992 -2.3267 4.1057 28 6 4.2235 -1.6607 3.0416 29 1 -0.3633 -1.0152 0.1595 30 1 -0.3633 0.6457 0.7995 31 1 -0.3634 0.3694 -0.9589 32 1 1.1115 1.3702 -6.9579 33 1 0.2786 2.6837 -6.3225 34 1 2.6399 1.8656 3.1187 35 1 1.9454 1.8165 1.4805 36 1 5.9903 0.8538 3.9274 37 1 2.1200 0.3595 4.7561 38 1 3.1464 -0.8394 6.6447 39 1 4.8639 -2.5526 6.2303 40 1 5.5534 -3.0789 3.9271 41 1 4.5268 -1.8919 2.0311 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007535837.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:46 Heat of formation + Delta-G solvation = 57.480021 kcal Electronic energy + Delta-G solvation = -27903.398358 eV Core-core repulsion = 24036.775548 eV Total energy + Delta-G solvation = -3866.622809 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 364.077 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.41474 -40.44758 -39.19205 -36.75553 -36.20896 -34.31650 -34.18593 -31.55461 -31.43770 -30.77679 -28.88707 -26.09806 -25.93493 -24.98575 -23.26854 -22.93121 -22.64032 -20.93564 -20.21201 -18.93165 -18.58209 -18.40586 -17.59618 -17.44116 -16.92721 -16.67988 -16.58720 -16.31423 -16.12338 -15.33078 -15.23211 -15.12171 -14.56015 -14.48431 -14.39954 -14.08550 -13.75352 -13.72730 -13.40194 -13.25832 -13.15443 -12.87372 -12.79906 -12.69533 -12.26425 -12.10112 -12.05775 -11.72544 -11.68491 -11.40505 -11.20479 -10.86416 -10.74578 -10.57753 -10.12802 -9.90011 -9.49982 -8.82113 -8.74363 -8.12317 -6.29366 -0.81136 -0.31106 -0.06769 0.14406 0.67140 0.83601 0.87381 1.20393 1.37551 1.41872 1.46183 1.78610 2.20645 2.26883 2.39938 3.07735 3.25600 3.59761 3.73874 3.79392 4.02624 4.11634 4.24901 4.32222 4.44397 4.58288 4.59421 4.71309 4.77977 4.88714 5.00151 5.04507 5.24887 5.38390 5.66705 5.72027 5.77841 5.81755 5.87243 5.95199 6.07701 6.31348 6.44190 6.51942 6.82969 6.99392 7.24093 7.39955 8.83952 Molecular weight = 364.08amu Principal moments of inertia in cm(-1) A = 0.012982 B = 0.003322 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.348232 B = 8427.034651 C = 9475.930686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.097 4.097 3 H 0.121 0.879 4 S 0.053 5.947 5 C -0.005 4.005 6 N -0.277 5.277 7 N -0.395 5.395 8 C 0.316 3.684 9 N -0.782 5.782 10 S 0.125 5.875 11 C 0.529 3.471 12 O -0.570 6.570 13 N -0.539 5.539 14 C 0.227 3.773 15 C -0.565 4.565 16 H 0.052 0.948 17 C 0.052 3.948 18 N -0.852 5.852 19 Si 0.929 3.071 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.281 1.281 23 C 0.214 3.786 24 C -0.126 4.126 25 C -0.106 4.106 26 C -0.144 4.144 27 C -0.118 4.118 28 C -0.128 4.128 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.434 0.566 33 H 0.427 0.573 34 H 0.038 0.962 35 H 0.056 0.944 36 H 0.265 0.735 37 H 0.108 0.892 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.129 0.871 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.080 -2.724 -12.565 14.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.231 4.231 3 H 0.139 0.861 4 S 0.281 5.719 5 C -0.406 4.406 6 N -0.106 5.106 7 N -0.234 5.234 8 C -0.070 4.070 9 N -0.340 5.340 10 S 0.356 5.644 11 C 0.315 3.685 12 O -0.451 6.451 13 N -0.264 5.264 14 C 0.110 3.890 15 C -0.603 4.603 16 H 0.071 0.929 17 C -0.155 4.155 18 N -0.486 5.486 19 Si 0.756 3.244 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.207 1.207 23 C 0.122 3.878 24 C -0.146 4.146 25 C -0.124 4.124 26 C -0.162 4.162 27 C -0.137 4.137 28 C -0.148 4.148 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.269 0.731 33 H 0.262 0.738 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.126 0.874 38 H 0.157 0.843 39 H 0.160 0.840 40 H 0.147 0.853 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.707 -3.878 -12.151 13.973 hybrid contribution 0.552 1.834 -0.741 2.054 sum -5.156 -2.044 -12.892 14.035 Atomic orbital electron populations 1.21876 0.88654 1.03760 1.04316 1.23557 1.02667 1.04053 0.92790 0.86054 1.85798 1.68161 1.25613 0.92285 1.30414 1.05610 1.02178 1.02351 1.75414 1.12852 1.04183 1.18121 1.75084 1.28915 1.26559 0.92834 1.26156 0.94699 0.93509 0.92589 1.41496 1.62595 1.30232 0.99665 1.85225 1.58844 1.23875 0.96475 1.19853 0.78167 0.86578 0.83874 1.90643 1.59000 1.15632 1.79832 1.46633 1.49774 1.09835 1.20196 1.19509 0.96173 0.75250 0.98094 1.21425 0.92495 1.41297 1.05064 0.92932 1.25418 1.01185 0.94254 0.94650 1.70033 1.29084 1.39184 1.10297 0.86073 0.81150 0.78682 0.78543 1.19790 1.20803 1.20681 1.17361 0.91746 0.91567 0.87162 1.20843 1.01324 1.00584 0.91865 1.21045 0.96794 0.96195 0.98405 1.21129 0.99038 0.99572 0.96454 1.21002 0.99927 0.99938 0.92796 1.20747 0.96928 0.99170 0.97971 0.90928 0.90143 0.90141 0.73146 0.73839 0.94343 0.92627 0.92525 0.87429 0.84255 0.83974 0.85349 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 9.12 71.98 0.66 -3.45 16 2 C -0.10 -3.70 2.35 29.85 0.07 -3.63 16 3 H 0.12 4.90 5.62 -2.39 -0.01 4.88 16 4 S 0.05 1.86 21.35 -56.49 -1.21 0.66 16 5 C 0.00 -0.16 7.49 130.57 0.98 0.82 16 6 N -0.28 -9.42 10.01 -55.48 -0.56 -9.97 16 7 N -0.39 -11.92 12.10 -56.30 -0.68 -12.60 16 8 C 0.32 6.85 8.93 179.22 1.60 8.45 16 9 N -0.78 -8.35 9.10 -56.37 -0.51 -8.86 16 10 S 0.13 2.78 23.39 -56.49 -1.32 1.46 16 11 C 0.53 23.32 6.24 87.66 0.55 23.86 16 12 O -0.57 -27.27 16.17 -3.06 -0.05 -27.32 16 13 N -0.54 -24.89 2.57 -635.30 -1.63 -26.52 16 14 C 0.23 10.56 5.05 85.63 0.43 10.99 16 15 C -0.56 -28.74 9.34 25.60 0.24 -28.51 16 16 H 0.05 2.71 7.82 -2.91 -0.02 2.69 16 17 C 0.05 2.65 5.30 84.66 0.45 3.10 16 18 N -0.85 -43.49 9.56 21.45 0.20 -43.28 16 19 Si 0.93 41.82 29.54 68.60 2.03 43.85 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 23 C 0.21 9.89 2.79 38.15 0.11 9.99 16 24 C -0.13 -5.31 8.77 22.39 0.20 -5.12 16 25 C -0.11 -3.80 10.04 22.25 0.22 -3.58 16 26 C -0.14 -4.93 10.04 22.29 0.22 -4.71 16 27 C -0.12 -4.55 10.04 22.25 0.22 -4.33 16 28 C -0.13 -5.87 8.35 22.39 0.19 -5.68 16 29 H 0.07 2.32 8.05 -2.39 -0.02 2.30 16 30 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.08 2.53 6.11 -2.39 -0.01 2.52 16 32 H 0.43 1.71 8.96 -92.71 -0.83 0.88 16 33 H 0.43 3.37 8.96 -92.71 -0.83 2.54 16 34 H 0.04 1.87 7.38 -2.39 -0.02 1.85 16 35 H 0.06 2.35 5.95 -2.39 -0.01 2.33 16 36 H 0.26 13.40 8.32 -92.71 -0.77 12.63 16 37 H 0.11 4.38 7.78 -2.91 -0.02 4.35 16 38 H 0.14 4.02 8.06 -2.91 -0.02 3.99 16 39 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 40 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 41 H 0.08 3.93 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -66.36 374.29 1.86 -64.50 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -0.55 Total: 19.87 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: 6.13 Total: -1.77 kcal Atomic # 7 Polarization: -98.06 SS G_CDS: -3.18 Total: -101.24 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.05 Total: -27.32 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Atomic # 16 Polarization: 4.64 SS G_CDS: -2.53 Total: 2.11 kcal Total: -66.36 1.86 -64.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007535837.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.980 kcal (2) G-P(sol) polarization free energy of solvation -66.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds