Wall clock time and date at job start Tue Mar 31 2020 06:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47432 * 2 1 4 4 S 1.81398 * 109.46816 * 120.00933 * 2 1 3 5 5 C 1.76200 * 102.99805 * 294.99478 * 4 2 1 6 6 N 1.29642 * 125.41416 * 0.02562 * 5 4 2 7 7 N 1.37763 * 115.60623 * 179.97438 * 6 5 4 8 8 C 1.29574 * 115.62334 * 0.02562 * 7 6 5 9 9 N 1.39004 * 125.40464 * 180.02562 * 8 7 6 10 10 S 1.76032 * 109.19325 * 359.76819 * 8 7 6 11 11 C 1.50699 * 109.46511 * 240.00402 * 2 1 3 12 12 O 1.21287 * 120.00298 * 265.00150 * 11 2 1 13 13 N 1.34775 * 120.00287 * 85.00583 * 11 2 1 14 14 C 1.46504 * 119.99885 * 355.01150 * 13 11 2 15 15 C 1.50699 * 109.47178 * 89.99826 * 14 13 11 16 16 H 1.08001 * 119.99925 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00164 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99635 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00010 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47254 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46999 * 120.00392 * 19 17 15 22 22 H 1.48502 * 109.47129 * 240.00255 * 19 17 15 23 23 C 1.39928 * 120.00521 * 175.00966 * 13 11 2 24 24 C 1.38866 * 120.06940 * 292.12462 * 23 13 11 25 25 C 1.38116 * 119.92751 * 179.78781 * 24 23 13 26 26 C 1.38287 * 120.06711 * 0.48976 * 25 24 23 27 27 C 1.38282 * 120.14365 * 359.73771 * 26 25 24 28 28 C 1.38111 * 120.06935 * 0.03088 * 27 26 25 29 29 H 1.08995 * 109.47723 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46620 * 299.99909 * 1 2 3 31 31 H 1.09002 * 109.47025 * 59.98981 * 1 2 3 32 32 H 0.97002 * 119.99374 * 359.96872 * 9 8 7 33 33 H 0.96990 * 120.00615 * 179.97438 * 9 8 7 34 34 H 1.08997 * 109.47675 * 210.00059 * 14 13 11 35 35 H 1.08998 * 109.46918 * 330.00355 * 14 13 11 36 36 H 0.97003 * 119.99162 * 179.97438 * 18 17 15 37 37 H 1.07997 * 120.04123 * 0.02562 * 24 23 13 38 38 H 1.07998 * 119.96496 * 180.23131 * 25 24 23 39 39 H 1.08001 * 119.92615 * 179.72351 * 26 25 24 40 40 H 1.07994 * 119.96350 * 180.02562 * 27 26 25 41 41 H 1.07999 * 120.03814 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 16 2.1346 -0.8554 1.4810 5 6 1.5827 0.1843 2.7922 6 7 0.9092 1.2825 2.6474 7 7 0.5809 1.9378 3.8139 8 6 0.9874 1.3733 4.9071 9 7 0.7696 1.8566 6.1921 10 16 1.8528 -0.1065 4.5072 11 6 2.0322 -0.7103 -1.2305 12 8 2.3206 -1.8872 -1.1763 13 7 2.1610 -0.0380 -2.3915 14 6 1.7107 1.3530 -2.4862 15 6 2.8450 2.2743 -2.1183 16 1 3.8054 1.8648 -1.8419 17 6 2.6568 3.6401 -2.1344 18 7 1.4871 4.1388 -2.4704 19 14 4.0627 4.7822 -1.6776 20 1 5.2645 3.9776 -1.3406 21 1 4.3697 5.6729 -2.8254 22 1 3.6715 5.6040 -0.5042 23 6 2.7248 -0.6682 -3.5063 24 6 4.0702 -1.0118 -3.5050 25 6 4.6227 -1.6378 -4.6053 26 6 3.8397 -1.9132 -5.7114 27 6 2.5007 -1.5681 -5.7176 28 6 1.9412 -0.9463 -4.6187 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 0.2772 2.6821 6.3228 33 1 1.1101 1.3686 6.9581 34 1 1.3891 1.5621 -3.5064 35 1 0.8769 1.5123 -1.8025 36 1 1.3546 5.0996 -2.4814 37 1 4.6832 -0.7933 -2.6431 38 1 5.6681 -1.9086 -4.6034 39 1 4.2751 -2.3988 -6.5722 40 1 1.8918 -1.7850 -6.5828 41 1 0.8954 -0.6766 -4.6243 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007535839.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:49 Heat of formation + Delta-G solvation = 48.820214 kcal Electronic energy + Delta-G solvation = -27439.736285 eV Core-core repulsion = 23572.737958 eV Total energy + Delta-G solvation = -3866.998327 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 364.077 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.60695 -40.45826 -39.45872 -36.88762 -36.21042 -34.67159 -34.31592 -31.82681 -31.46031 -30.81669 -29.03210 -26.16612 -26.01500 -24.98034 -23.54769 -23.27292 -22.66359 -20.98711 -20.27549 -18.84011 -18.74511 -18.55995 -17.77056 -17.56185 -17.08404 -16.61827 -16.51608 -16.38389 -16.26342 -15.58147 -15.40502 -15.14048 -14.71638 -14.54142 -14.41494 -14.29157 -13.89343 -13.56823 -13.52399 -13.42034 -13.18138 -13.05661 -12.85741 -12.69279 -12.52591 -12.20145 -12.11227 -12.02909 -11.74471 -11.48143 -11.18720 -11.03131 -10.74728 -10.65086 -10.19314 -9.90412 -9.83019 -9.30543 -8.83396 -8.27473 -6.40956 -0.79146 -0.30318 -0.07760 0.17738 0.40256 0.50914 0.75321 1.21391 1.33267 1.35988 1.44418 1.48173 2.05967 2.26078 2.35385 2.86972 3.04237 3.36534 3.73424 3.74165 4.04716 4.09281 4.10788 4.13661 4.28505 4.48938 4.53757 4.59913 4.66838 4.69129 4.87960 5.01280 5.12365 5.15866 5.45306 5.53538 5.60027 5.65922 5.73105 5.77168 5.95538 6.11994 6.29686 6.31360 6.67711 7.00863 7.03511 7.30239 8.78764 Molecular weight = 364.08amu Principal moments of inertia in cm(-1) A = 0.009614 B = 0.003534 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.677674 B = 7921.078968 C = 9818.168785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.102 4.102 3 H 0.118 0.882 4 S 0.078 5.922 5 C -0.013 4.013 6 N -0.281 5.281 7 N -0.399 5.399 8 C 0.314 3.686 9 N -0.783 5.783 10 S 0.135 5.865 11 C 0.544 3.456 12 O -0.559 6.559 13 N -0.550 5.550 14 C 0.249 3.751 15 C -0.546 4.546 16 H 0.052 0.948 17 C 0.028 3.972 18 N -0.913 5.913 19 Si 0.948 3.052 20 H -0.269 1.269 21 H -0.272 1.272 22 H -0.281 1.281 23 C 0.131 3.869 24 C -0.131 4.131 25 C -0.111 4.111 26 C -0.122 4.122 27 C -0.108 4.108 28 C -0.140 4.140 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.426 0.574 33 H 0.434 0.566 34 H 0.025 0.975 35 H 0.042 0.958 36 H 0.268 0.732 37 H 0.103 0.897 38 H 0.150 0.850 39 H 0.161 0.839 40 H 0.156 0.844 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.788 -10.050 10.302 14.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.236 4.236 3 H 0.136 0.864 4 S 0.305 5.695 5 C -0.414 4.414 6 N -0.109 5.109 7 N -0.239 5.239 8 C -0.072 4.072 9 N -0.340 5.340 10 S 0.366 5.634 11 C 0.331 3.669 12 O -0.439 6.439 13 N -0.277 5.277 14 C 0.130 3.870 15 C -0.585 4.585 16 H 0.070 0.930 17 C -0.173 4.173 18 N -0.552 5.552 19 Si 0.774 3.226 20 H -0.194 1.194 21 H -0.198 1.198 22 H -0.207 1.207 23 C 0.040 3.960 24 C -0.151 4.151 25 C -0.130 4.130 26 C -0.140 4.140 27 C -0.126 4.126 28 C -0.159 4.159 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.260 0.740 33 H 0.269 0.731 34 H 0.043 0.957 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.121 0.879 38 H 0.167 0.833 39 H 0.179 0.821 40 H 0.174 0.826 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.181 -11.078 10.144 15.067 hybrid contribution -0.283 2.699 0.553 2.770 sum 0.898 -8.378 10.697 13.617 Atomic orbital electron populations 1.21912 0.89075 1.03669 1.04277 1.23510 1.02752 1.04252 0.93040 0.86420 1.85616 1.67766 1.24807 0.91288 1.30660 1.05708 1.02057 1.02937 1.75498 1.12910 1.04423 1.18104 1.75106 1.28846 1.26948 0.92955 1.26217 0.94743 0.93694 0.92524 1.41488 1.62641 1.30264 0.99640 1.85057 1.59069 1.23220 0.96103 1.19702 0.77332 0.85971 0.83861 1.90646 1.52185 1.15910 1.85139 1.45686 1.58967 1.14337 1.08698 1.19367 0.95252 0.74546 0.97833 1.21571 0.97992 0.91569 1.47348 0.93003 1.25552 0.97867 0.99290 0.94594 1.69993 1.23752 1.13482 1.47947 0.85644 0.79819 0.79051 0.78132 1.19365 1.19760 1.20715 1.17953 0.92598 0.97075 0.88338 1.21310 0.93588 1.00475 0.99737 1.21330 1.01240 0.97827 0.92569 1.21549 0.93715 0.99892 0.98817 1.21360 0.96192 0.97417 0.97617 1.21391 0.99889 1.00513 0.94151 0.90172 0.90223 0.91056 0.73961 0.73081 0.95665 0.93983 0.92236 0.87921 0.83258 0.82119 0.82598 0.86110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.75 8.81 71.98 0.63 -4.12 16 2 C -0.10 -4.12 2.04 29.85 0.06 -4.06 16 3 H 0.12 5.45 6.52 -2.39 -0.02 5.43 16 4 S 0.08 2.69 20.90 -56.49 -1.18 1.51 16 5 C -0.01 -0.43 7.58 130.57 0.99 0.56 16 6 N -0.28 -10.60 9.95 -55.48 -0.55 -11.15 16 7 N -0.40 -13.46 12.10 -56.30 -0.68 -14.14 16 8 C 0.31 7.43 8.93 179.22 1.60 9.03 16 9 N -0.78 -9.72 9.10 -56.37 -0.51 -10.23 16 10 S 0.14 3.06 23.39 -56.49 -1.32 1.74 16 11 C 0.54 23.69 6.65 87.66 0.58 24.27 16 12 O -0.56 -25.41 15.90 -3.05 -0.05 -25.46 16 13 N -0.55 -24.66 2.51 -635.30 -1.59 -26.26 16 14 C 0.25 12.39 4.72 85.63 0.40 12.79 16 15 C -0.55 -29.52 8.62 25.60 0.22 -29.30 16 16 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 17 C 0.03 1.54 5.46 84.65 0.46 2.00 16 18 N -0.91 -51.80 13.29 21.45 0.28 -51.52 16 19 Si 0.95 43.84 29.54 68.60 2.03 45.87 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 22 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 23 C 0.13 5.41 4.75 38.15 0.18 5.59 16 24 C -0.13 -5.03 9.55 22.39 0.21 -4.82 16 25 C -0.11 -3.26 10.04 22.25 0.22 -3.03 16 26 C -0.12 -3.05 10.04 22.29 0.22 -2.83 16 27 C -0.11 -2.95 10.04 22.25 0.22 -2.73 16 28 C -0.14 -4.97 9.68 22.39 0.22 -4.76 16 29 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.08 2.92 6.23 -2.39 -0.01 2.91 16 31 H 0.07 2.69 6.46 -2.39 -0.02 2.67 16 32 H 0.43 4.30 8.95 -92.71 -0.83 3.47 16 33 H 0.43 2.22 8.95 -92.72 -0.83 1.39 16 34 H 0.03 1.33 7.85 -2.39 -0.02 1.31 16 35 H 0.04 2.14 5.03 -2.39 -0.01 2.13 16 36 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 37 H 0.10 4.14 8.06 -2.91 -0.02 4.12 16 38 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 39 H 0.16 2.67 8.06 -2.91 -0.02 2.64 16 40 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 41 H 0.12 4.17 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -72.60 379.45 2.11 -70.48 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -0.55 Total: 20.54 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: 6.24 Total: -1.39 kcal Atomic # 7 Polarization: -110.24 SS G_CDS: -3.05 Total: -113.30 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.05 Total: -25.46 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: 5.75 SS G_CDS: -2.50 Total: 3.25 kcal Total: -72.60 2.11 -70.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007535839.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.302 kcal (2) G-P(sol) polarization free energy of solvation -72.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds